Clone LD46269 Report

Search the DGRC for LD46269

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:462
Well:69
Vector:pOT2
Associated Gene/TranscriptCG9246-RA
Protein status:LD46269.pep: gold
Preliminary Size:2416
Sequenced Size:2425

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9246 2001-01-01 Release 2 assignment
CG9246 2001-10-10 Blastp of sequenced clone
CG9246 2003-01-01 Sim4 clustering to Release 3
CG9246 2008-04-29 Release 5.5 accounting
CG9246 2008-08-15 Release 5.9 accounting
CG9246 2008-12-18 5.12 accounting

Clone Sequence Records

LD46269.complete Sequence

2425 bp (2425 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061505

> LD46269.complete
GCAGCCCCGTTGAACAGCACACGTGCATTTTTGTTTTAGTTTGCACGTTG
AAAAATGAAGCTGGCTACGAAAAAAATTAAGACCCTGGGCAAATCCAAGC
CTGACCTAAGCAAAAAGAAGCCCGCCAAGGATGCCATCAGGAAGACGAAA
CCGCAAACAACCTCTGAAACGAAAGTTACTCCAAGAAACCCGAAGCAGAA
AGTCGCCGAACCAGTGAAGAATGGGAAGACCACAAAAAAGGGATTTAAGA
AATCCCACAAAGAGGAGCTTGAAGGGCTTAAAGATATAGACCCAGAATTT
TATGATTTCTTAAAAAATAATGATAAGAAGCTACTGGACTTTAATTTACT
GGACACAGATGATGATGATGATGAAGAGGGGGATGAGGAAGACAAGGAAG
ATACGGTAACTAAGGAAAGTAAGGATGACGAGGATGACGAAGAGAAGTAC
CACAAACCCAGCAAGGATTTGGAGGTGGCTAGCGATGAGAGTGACTTTGA
GGTCGACGAAGAGGACGATGCGGCAGCTGGAGGTATCCAAAAGATCACCC
TCAACCTGTTGCATCAGTGGGAACAGCAATTGGGCCAGGCCAACATATCT
ATTGACATTGTCCGCAAGGTTATCCAGGCTTTCAATTCAGCTCTGGCTAG
TATCTCTGCCGACGGAGCGGACGGAGGAGAGAACAAGCATAATGCTGCCG
CATTTAAGGTAGTGGGGGCAGCTGCGTTTAATGGAGTAATTCAGCTCTGC
GTAATCCACCTGCAGCCCGCTATAATTCGATTGCTGGGCGTTAGACCCAA
CAGCAGCCTACCGCTGCACAAGCACAAGAAGTGGGTCAAGGTGCGAGGCT
GTTTGCGCTACTACCTCACCGATTTGATTCGTCTGGTGGAGCAGGTGTCC
AGTCCAAATATCTTGGGCGTGTTGCTGAAGCATTTGCATCAAATGGCCGG
CATGGTGGTTCCCTTTTCGGCACTTGGAAAGACCATATTAAAGCGTCTGG
TTGTCTTATGGTCCACTGGAGATGAAACAGTTCGTGTTCTGGCCTTTCTC
TGCATTCTGAAGATAACCAGGAAACAGCAGGCGACCATGCTGAATCACGT
TCTAAAAGCCATGTACCTGGCCTATGTACGCAATTCCAAGTTCGTGTCGC
CGAACACTTTACCAGGAATCAACTTTATGCGCCGCTCGCTGGTGGAGATG
TTCGCGTTGGATTTAAACGTCAGTTATCAACATGTCTTCCTCTACATCCG
ACAGTTGGCCATTCACCTGCGAAATGCAGTGATCCTTAAGAAAAAGGACA
GTTTCCAAGCGGTTTACAACTGGCAATTTATTAACTCGCTGCGCTTGTGG
GCAGATCTCCTGGGAGCAAGTGCGAACAAACCACAGTTGCAGCCTCTGAT
TTATCCCCTTGTTACCATTGCCACCGGAGTGATTCGACTGATACCCACCG
CTCAATACTTCCCATTGCGATTCCACTGTCTGCAGACCCTAATTTCACTG
GCCAAAGAGACAAACACATATGTGCCGGTGCTTCCACTCATTGTGGAGGT
ATTAAAGAGCAATACCTTTAACCGCAAGCACTCGGCGGTATCCATGAAGC
CAGTGCAGTTTACCTGCGTCCTTAGGCTTAACAAAGGGCAGTTGGCGGAA
AATGGCTTCCGCGATGAGGTGATCGAGCAGGTGTGTGGGCTTCTGTTGGA
ATATCTCGCTCATGAGTCCACCTCGCTGGCCTTTAGTGATTTGGTGGTGC
CCACTGTCATGGCCATCAAAACGTACCTTAAGGAATGCAGGAATGCCAAT
TATGCTCGAAAACTTAAACAGCTGCTAGAGAAGATTCAGGAGAGTGCCCG
CTTCATAGAGCAGCAACGTGGCAAGAGCAGTGTCACTTTTGACATAAAGG
ATGCGCAGGCGGTCGCCGCCTGGGAGCAGCAACTCCGTCTTAAGCGCACT
CCACTAGACGTCTACTATGCCAGCTGGCTAAAGACACACGAGACCAAGAA
GCGACGACAGGCAGCACATACAGATGAAATCAATGCGGACTATGATGTGC
CCAAGCTAAAGAAACTACCGGTCAAAACCGGAGTACCAGTGAGAAATGAA
AACGGCGAGGTCGAACTCTTCCCCTCGGACTCGGAAGATGAAGGCGATGA
TGGCCTGCATTTGGGATCAGATGATGATGACGACGAGGATGTACAGGAGG
AGGAGGAGGTGGAAGTTGAGCACCCTAAAGCCAAAAAGGCGAAGAAAGAG
AAGCCCGAGAAACAAAAACCTCGGCCAGCAACAGTGGAAGATGATTACGA
CGAGGCGGGTGGAGCCGTGGATATTGTTAAGGACTTAGATTTGAACGAAT
GGTAAAACATTTAAGATCAATTTAACTATATTTACACATTAAATTAAAAG
GAAAACCAAAAAAAAAAAAAAAAAA

LD46269.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9246-RA 2574 CG9246-RA 41..2449 1..2409 12045 100 Plus
CG9243.a 2378 CG9243.a 2332..2378 2409..2363 235 100 Minus
CG9243-RA 2253 CG9243-RA 2210..2253 2409..2366 220 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21163265..21164595 1077..2407 6655 100 Plus
chr2L 23010047 chr2L 21162130..21163210 1..1081 5405 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21164760..21166092 1077..2409 6665 100 Plus
2L 23513712 2L 21163625..21164705 1..1081 5405 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21164760..21166092 1077..2409 6665 100 Plus
2L 23513712 2L 21163625..21164705 1..1081 5405 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:55:39 has no hits.

LD46269.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:56:26 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21162130..21162486 1..357 100 == Plus
chr2L 21162573..21163209 444..1080 100 -> Plus
chr2L 21163269..21164595 1081..2407 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:48 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 1..2301 55..2355 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:38:58 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 1..2301 55..2355 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:03:41 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 1..2301 55..2355 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:47 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 1..2301 55..2355 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:40 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 1..2301 55..2355 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:09 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 15..2421 1..2407 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:38:58 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 15..2421 1..2407 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:41 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 1..2391 17..2407 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:47 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 15..2421 1..2407 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:40 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
CG9246-RA 1..2391 17..2407 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:26 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21163625..21164704 1..1080 100 -> Plus
2L 21164764..21166090 1081..2407 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:26 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21163625..21164704 1..1080 100 -> Plus
2L 21164764..21166090 1081..2407 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:26 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21163625..21164704 1..1080 100 -> Plus
2L 21164764..21166090 1081..2407 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:41 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21163625..21164704 1..1080 100 -> Plus
arm_2L 21164764..21166090 1081..2407 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:43:58 Download gff for LD46269.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21163625..21164704 1..1080 100 -> Plus
2L 21164764..21166090 1081..2407 100   Plus

LD46269.pep Sequence

Translation from 54 to 2354

> LD46269.pep
MKLATKKIKTLGKSKPDLSKKKPAKDAIRKTKPQTTSETKVTPRNPKQKV
AEPVKNGKTTKKGFKKSHKEELEGLKDIDPEFYDFLKNNDKKLLDFNLLD
TDDDDDEEGDEEDKEDTVTKESKDDEDDEEKYHKPSKDLEVASDESDFEV
DEEDDAAAGGIQKITLNLLHQWEQQLGQANISIDIVRKVIQAFNSALASI
SADGADGGENKHNAAAFKVVGAAAFNGVIQLCVIHLQPAIIRLLGVRPNS
SLPLHKHKKWVKVRGCLRYYLTDLIRLVEQVSSPNILGVLLKHLHQMAGM
VVPFSALGKTILKRLVVLWSTGDETVRVLAFLCILKITRKQQATMLNHVL
KAMYLAYVRNSKFVSPNTLPGINFMRRSLVEMFALDLNVSYQHVFLYIRQ
LAIHLRNAVILKKKDSFQAVYNWQFINSLRLWADLLGASANKPQLQPLIY
PLVTIATGVIRLIPTAQYFPLRFHCLQTLISLAKETNTYVPVLPLIVEVL
KSNTFNRKHSAVSMKPVQFTCVLRLNKGQLAENGFRDEVIEQVCGLLLEY
LAHESTSLAFSDLVVPTVMAIKTYLKECRNANYARKLKQLLEKIQESARF
IEQQRGKSSVTFDIKDAQAVAAWEQQLRLKRTPLDVYYASWLKTHETKKR
RQAAHTDEINADYDVPKLKKLPVKTGVPVRNENGEVELFPSDSEDEGDDG
LHLGSDDDDDEDVQEEEEVEVEHPKAKKAKKEKPEKQKPRPATVEDDYDE
AGGAVDIVKDLDLNEW*

LD46269.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14742-PA 770 GF14742-PA 1..770 1..766 3038 80 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21284-PA 762 GG21284-PA 1..762 1..766 3447 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11259-PA 751 GH11259-PA 62..751 71..766 2705 78.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9246-PA 766 CG9246-PA 1..766 1..766 3935 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21889-PA 746 GI21889-PA 60..746 70..766 2841 79.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25894-PA 769 GL25894-PA 1..769 1..766 3113 79.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21641-PA 771 GA21641-PA 1..771 1..766 3118 78.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23396-PA 764 GM23396-PA 1..764 1..766 3558 93.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24306-PA 721 GD24306-PA 2..721 45..766 3357 94.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17811-PA 755 GJ17811-PA 1..755 1..766 2819 74.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21114-PA 771 GK21114-PA 1..771 1..766 2860 72.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12901-PA 764 GE12901-PA 1..764 1..766 3529 92.2 Plus

LD46269.hyp Sequence

Translation from 54 to 2354

> LD46269.hyp
MKLATKKIKTLGKSKPDLSKKKPAKDAIRKTKPQTTSETKVTPRNPKQKV
AEPVKNGKTTKKGFKKSHKEELEGLKDIDPEFYDFLKNNDKKLLDFNLLD
TDDDDDEEGDEEDKEDTVTKESKDDEDDEEKYHKPSKDLEVASDESDFEV
DEEDDAAAGGIQKITLNLLHQWEQQLGQANISIDIVRKVIQAFNSALASI
SADGADGGENKHNAAAFKVVGAAAFNGVIQLCVIHLQPAIIRLLGVRPNS
SLPLHKHKKWVKVRGCLRYYLTDLIRLVEQVSSPNILGVLLKHLHQMAGM
VVPFSALGKTILKRLVVLWSTGDETVRVLAFLCILKITRKQQATMLNHVL
KAMYLAYVRNSKFVSPNTLPGINFMRRSLVEMFALDLNVSYQHVFLYIRQ
LAIHLRNAVILKKKDSFQAVYNWQFINSLRLWADLLGASANKPQLQPLIY
PLVTIATGVIRLIPTAQYFPLRFHCLQTLISLAKETNTYVPVLPLIVEVL
KSNTFNRKHSAVSMKPVQFTCVLRLNKGQLAENGFRDEVIEQVCGLLLEY
LAHESTSLAFSDLVVPTVMAIKTYLKECRNANYARKLKQLLEKIQESARF
IEQQRGKSSVTFDIKDAQAVAAWEQQLRLKRTPLDVYYASWLKTHETKKR
RQAAHTDEINADYDVPKLKKLPVKTGVPVRNENGEVELFPSDSEDEGDDG
LHLGSDDDDDEDVQEEEEVEVEHPKAKKAKKEKPEKQKPRPATVEDDYDE
AGGAVDIVKDLDLNEW*

LD46269.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9246-PA 766 CG9246-PA 1..766 1..766 3935 100 Plus