Clone LD46272 Report

Search the DGRC for LD46272

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:462
Well:72
Vector:pOT2
Associated Gene/TranscriptCG4617-RA
Protein status:LD46272.pep: gold
Preliminary Size:1829
Sequenced Size:1689

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4617 2001-01-01 Release 2 assignment
CG4617 2001-07-04 Blastp of sequenced clone
CG4617 2008-04-29 Release 5.5 accounting
CG4617 2008-08-15 Release 5.9 accounting
CG4617 2008-12-18 5.12 accounting

Clone Sequence Records

LD46272.complete Sequence

1689 bp (1689 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051996

> LD46272.complete
TTTTGTTTGCTTCGTTTAATTCGTTCTTTTTGCAACAAATTGCATCCCAA
TCTTCCAAAGCAGGTATCCAAACATGGAGTCCCCAACCTCGCACCTGGTG
GCCAAGGATTTCCAGGTGACGGGTGTTTCGCGCAGCGGACGCGTACGCAA
AAAATCGTCGAAATTGTTGGATTTTGAATCTCCGGATGAGATCGAGAAGC
GCACAAGGCGTCACAGTGGCGCCAGACAGCCAGCCAGATATTCGGGCCGC
GGCAGGCCATCGAATGCGCTGCGTGATCTGGATCTTGACCAGGAGATGCT
CGTGGATGATGGCATTATCTCGGATAGCGAGGAATTCCATCCGGATACAA
CGGCAACGGTCGTGGCCATTCTGAATTCCGACGATGAACTGGACAATCTG
GTGCAGGATATCGTCGATGGTGTCCAGGCGGAGGCCACCAGCCAAGAGTC
ATCCGTCCGTCAGAGTCTTTACATGCGCGAGAAGTCCAACAAGCGGCAGG
TGCTCAAGGACGGCAAGGTGGTGAGTGCCAAGGTGCAGCGCAAGGACAAG
GGCAAGCAGCGCTACACCGCCTACAGTCTGTGGGCCAAGGAGGCGCGACA
GAAGGATCTCCAGGATCTAGACTTCACCAGCGCGACCAGACGCCTCAGCG
AGCTGTGGGCGAACGTTTCCAATCGGGACAAGAACACCTGGCGGCGCAAG
GCCAAAATCGAGGCGTCCAGGGCCAAAACTCGCGACAAAACCGCTGCAAA
CGGTGCAACCCAGCCGGCGAGCAACGGCAGCACGGCTCTGGCAGATGCCA
CGCAGCACGAGACGATCTTTCAGAACCGTGCGACAACAAGTCGCACTCGA
AAACTGGCCGCCGATCGGCAGCAATCCTCAATAGAAGCGGCTGCCGCAGC
GGCGGCAGCAGCAGCGACTGGCACCAACACACAGCGGCGCAGCATCAGCA
CACGAAGTGCCAGGTCGCAGGTCTCGAAGAGCGCGACGAAACAAGCGCAA
GTGCACACGGATGCGGACGTCAGCGGCCGGACTGGGGGTCAGCTGAAGCA
GGAGGAGGTGCAAAAGACCAGCATCGAAGTGATCGATGCGGCCGCACATC
TGAAGCTGCTCGGCGAGAGCCTGACTGTGATTGGCGAGCGACTGAAGAAG
CACAATGGATACGTGGCGCTATCGGGCAGCTTGTCCGTGCTCCTCGACAG
CCTGCTCTGCGCCATGGGACCGCTGCTCTGCATGACCACGCAAATACCCG
GCATGGAGAACAATGTGCAGTTGAGCAAAAATCTGGCCGACACGCTCGAC
AACATCGCCTACGTAATGCCCGGACTATGAAGTAAATTCCGGATTGCAAC
TGCAAATGCATACATATATATATATATATAATCATACCAGGCCGCTGCGC
TTCCAGCGGCGACTAGAGTCGCCATCGGGATCTGTATGTTTGTAAGGAGT
TGGCCAACCTGGAAATAGTTAATCGCATTAGATATGCCTAGTTGATAAAC
TGAAGCATCTAGATCCACAAATCATCGAAACATTGGTAGAATTAGGCAAC
ATTAAATATCCTATAATCCTTAAGTGAAATAAATGTGAATCACAAGATTC
TTATTTCAGCTTCAAATTAAGCAGGCACTTTTTATAATAAACGTAATAAA
TAAAGATAAATATAAAAGCTAAAAAAAAAAAAAAAAAAA

LD46272.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-RA 1717 CG4617-RA 43..1717 1..1675 8375 100 Plus
CG4617.a 1626 CG4617.a 43..1557 1..1515 7575 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6994819..6995715 1515..619 4470 99.9 Minus
chrX 22417052 chrX 6995780..6996293 620..107 2570 100 Minus
chrX 22417052 chrX 6994536..6994690 1670..1516 760 99.4 Minus
chrX 22417052 chrX 6996349..6996455 107..1 535 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7102835..7103731 1515..619 4485 100 Minus
X 23542271 X 7103792..7104305 620..107 2570 100 Minus
X 23542271 X 7102550..7102709 1675..1516 800 100 Minus
X 23542271 X 7104361..7104467 107..1 535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7110933..7111829 1515..619 4485 100 Minus
X 23527363 X 7111890..7112403 620..107 2570 100 Minus
X 23527363 X 7110648..7110807 1675..1516 800 100 Minus
X 23527363 X 7112459..7112565 107..1 535 100 Minus
Blast to na_te.dros performed 2019-03-16 11:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
invader4 3105 invader4 INVADER4 3105bp 829..945 100..213 127 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2742..2970 797..1027 121 56.7 Plus

LD46272.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:26:17 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6994536..6994690 1516..1670 99 <- Minus
chrX 6994819..6995383 951..1515 100 == Minus
chrX 6995456..6995713 621..878 99 <- Minus
chrX 6995780..6996292 108..620 100 <- Minus
chrX 6996349..6996455 1..107 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:49 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 1..1257 74..1330 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:16 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 1..1257 74..1330 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:46:34 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 1..1257 74..1330 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:39 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 1..1257 74..1330 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:11 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 1..1257 74..1330 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:08:56 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 32..1701 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:16 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 32..1701 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:46:34 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 25..1694 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:39 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 32..1701 1..1670 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:11 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
CG4617-RA 25..1694 1..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:17 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
X 7102555..7102709 1516..1670 100 <- Minus
X 7102835..7103729 621..1515 100 <- Minus
X 7103792..7104304 108..620 100 <- Minus
X 7104361..7104467 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:17 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
X 7102555..7102709 1516..1670 100 <- Minus
X 7102835..7103729 621..1515 100 <- Minus
X 7103792..7104304 108..620 100 <- Minus
X 7104361..7104467 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:17 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
X 7102555..7102709 1516..1670 100 <- Minus
X 7102835..7103729 621..1515 100 <- Minus
X 7103792..7104304 108..620 100 <- Minus
X 7104361..7104467 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:46:34 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6996588..6996742 1516..1670 100 <- Minus
arm_X 6996868..6997762 621..1515 100 <- Minus
arm_X 6997825..6998337 108..620 100 <- Minus
arm_X 6998394..6998500 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:34 Download gff for LD46272.complete
Subject Subject Range Query Range Percent Splice Strand
X 7110653..7110807 1516..1670 100 <- Minus
X 7110933..7111827 621..1515 100 <- Minus
X 7111890..7112402 108..620 100 <- Minus
X 7112459..7112565 1..107 100   Minus

LD46272.pep Sequence

Translation from 73 to 1329

> LD46272.pep
MESPTSHLVAKDFQVTGVSRSGRVRKKSSKLLDFESPDEIEKRTRRHSGA
RQPARYSGRGRPSNALRDLDLDQEMLVDDGIISDSEEFHPDTTATVVAIL
NSDDELDNLVQDIVDGVQAEATSQESSVRQSLYMREKSNKRQVLKDGKVV
SAKVQRKDKGKQRYTAYSLWAKEARQKDLQDLDFTSATRRLSELWANVSN
RDKNTWRRKAKIEASRAKTRDKTAANGATQPASNGSTALADATQHETIFQ
NRATTSRTRKLAADRQQSSIEAAAAAAAAAATGTNTQRRSISTRSARSQV
SKSATKQAQVHTDADVSGRTGGQLKQEEVQKTSIEVIDAAAHLKLLGESL
TVIGERLKKHNGYVALSGSLSVLLDSLLCAMGPLLCMTTQIPGMENNVQL
SKNLADTLDNIAYVMPGL*

LD46272.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20942-PA 406 GF20942-PA 1..406 1..418 1280 67.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17635-PA 415 GG17635-PA 1..415 1..418 1816 88.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24353-PA 469 GH24353-PA 1..469 1..418 1026 53.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-PC 418 CG4617-PC 1..418 1..418 2072 100 Plus
CG4617-PA 418 CG4617-PA 1..418 1..418 2072 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11048-PA 423 GI11048-PA 1..423 1..418 1076 59.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14638-PA 429 GL14638-PA 1..429 1..418 1193 60.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18305-PA 431 GA18305-PA 1..431 1..418 1192 60.3 Plus
Dpse\GA28694-PA 528 GA28694-PA 1..130 1..134 315 51.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17478-PA 414 GM17478-PA 1..414 1..418 1952 94.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16162-PA 418 GD16162-PA 1..418 1..418 1984 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14806-PA 428 GJ14806-PA 1..428 1..418 1085 58.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16379-PA 473 GK16379-PA 14..473 9..418 1116 56.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17541-PA 417 GE17541-PA 1..417 1..418 1830 89 Plus

LD46272.hyp Sequence

Translation from 73 to 1329

> LD46272.hyp
MESPTSHLVAKDFQVTGVSRSGRVRKKSSKLLDFESPDEIEKRTRRHSGA
RQPARYSGRGRPSNALRDLDLDQEMLVDDGIISDSEEFHPDTTATVVAIL
NSDDELDNLVQDIVDGVQAEATSQESSVRQSLYMREKSNKRQVLKDGKVV
SAKVQRKDKGKQRYTAYSLWAKEARQKDLQDLDFTSATRRLSELWANVSN
RDKNTWRRKAKIEASRAKTRDKTAANGATQPASNGSTALADATQHETIFQ
NRATTSRTRKLAADRQQSSIEAAAAAAAAAATGTNTQRRSISTRSARSQV
SKSATKQAQVHTDADVSGRTGGQLKQEEVQKTSIEVIDAAAHLKLLGESL
TVIGERLKKHNGYVALSGSLSVLLDSLLCAMGPLLCMTTQIPGMENNVQL
SKNLADTLDNIAYVMPGL*

LD46272.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4617-PC 418 CG4617-PC 1..418 1..418 2072 100 Plus
CG4617-PA 418 CG4617-PA 1..418 1..418 2072 100 Plus