Clone LD46305 Report

Search the DGRC for LD46305

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:463
Well:5
Vector:pOT2
Associated Gene/TranscriptCG4949-RA
Protein status:LD46305.pep: gold
Preliminary Size:1984
Sequenced Size:1996

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4949 2001-01-01 Release 2 assignment
CG4949 2001-10-10 Blastp of sequenced clone
CG4949 2003-01-01 Sim4 clustering to Release 3
CG4949 2008-04-29 Release 5.5 accounting
CG4949 2008-08-15 Release 5.9 accounting
CG4949 2008-12-18 5.12 accounting

Clone Sequence Records

LD46305.complete Sequence

1996 bp (1996 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061506

> LD46305.complete
CGGCAGAAGAATTTTAGAATTCCTTAAATATATATTGTTTAATTTGTAAG
CATTTTTAAGGAATGAGTTTGAGCGACTGCAACAATAACTATATATATTT
GACGGGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAACGCT
TTGCCACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCAGGGA
ATGGCAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACCTGAC
CATTCTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTGGAAA
TGCAGGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTTTGAT
CTGCAGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGCAGTG
CTCCACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCCTTTG
TGAATTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGGCAAA
AGCATCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGTCAGC
AGCCCAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAGTGCC
ACACGAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAGATTC
GCCTAGACGAAGGACAGAAGTTTGGAGCCACTACAGTGCCTTGGTAACCA
GTTCCTGAGTTTAATCATAGCTGGCAGTATTGTAGTTATTCGCCGTATGC
TCTTGCTTTTCAAACAATACTTACTTAGAACGTTTACCTTATGCATTATT
AAAACATGCATTTTGTCAGGTTAGACGAATATTTTCAAAGCTGGAACGAA
TTTTCCAATCTCGAACGAATTTCGAGTTATTAAGACTGCATTTCCATTTT
ATTGACTTAAAGCTATTCATATTGCCTTCCCAAAAGATATCCAAATGGGG
AACGGTCGAATATTTAAGAAAATGAATTTATAAAAGGCAAGGCACGCTAT
ATTATATCCGCATATAATACTAAGACAGTGCGTACATTTGGCAAGAACTT
AAGAAATACTGTACGTTGAAAATATCTCCCTACATGGCATCCATGCAAAA
TGTTATACGAAAGCGAAGCAATCGAATGCTCGATCAAATATAAGACTTTA
TTATAGTATACTATTTAGTCTAAAAGGGATTAAAACTACCAAAAAAAAAT
TGCTGATAATTAATTATAATATACATACATATAACAATAATATTTATTAT
GCTAAACGGAAATCTCAACTTAAGGGAATTTATATGAAATAAAAAAAAAA
TTTCGAATGCATAAGATACGTAAATGCAGCTAAAAGTATTGGAGAATGTA
TTCCGGAAATACGGCTAGTGATCTCCGGAACGCAAGCCACCAAAGCCCGT
TTAAAAGGAACTAAAACTCATTCACATGTAGCCCCACCCCAAATCCCTGC
TGCCTTCGTCTTCGATTGGAATCCGATCTCCGCATCCCAGCCTCATATGT
AGTCCAGCATGCCGCTTATGATCTCAAAGGCATCCCGAGCCGTGGGCTCA
ATGGCGCTGCTGGGCAGCAGATAACCGTGCACTCCGTTGTCCGCCAGCTG
GAGCGTGTAGCTGAAGGGAATTCCGATCTCGTAGGCGGCAAAAGCGTCCG
CACAGCCTGGATAAATCAAGGAAGCCAAAGGATTGGCAAGGTCGGATAAA
GATCTCTATTATATTCTACTTCGAAGCAAATAATATAAATATTACGCACC
CGATCGCTGTTCAATTAGATCGTTGGATGCGTCGACCTTATATCGGGACT
TACTACCCTTTTTGCGCAATCCATCGGTACCCACCATCGCCACGTCCAGA
AAATCATCCAATCTTTCTGAATTGAAAGTGGAATTGGCCTTGACCGGATA
GGATATCACCTGACCATAGGCCTGTAGGGAAATGTAAAGCTGCAAAAATA
ATGAATAAAGTTAATAAATCAAAAAATAAAAAAAAAAAAAAAAAAA

LD46305.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-RA 2036 CG4949-RA 56..2033 1..1978 9890 100 Plus
CG4949-RB 2047 CG4949-RB 206..2047 136..1977 9210 100 Plus
CG8945-RC 4363 CG8945-RC 4008..4200 1941..1749 965 100 Minus
CG8945-RC 4363 CG8945-RC 4199..4363 1657..1493 825 100 Minus
CG4949-RB 2047 CG4949-RB 12..148 1..137 685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16968607..16970445 136..1974 8950 99.3 Plus
chrX 22417052 chrX 16968413..16968549 1..137 685 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17079066..17080908 136..1978 9215 100 Plus
X 23542271 X 17078872..17079008 1..137 685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17087164..17089006 136..1978 9215 100 Plus
X 23527363 X 17086970..17087106 1..137 685 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:31:02 has no hits.

LD46305.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:31:56 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16968413..16968549 1..137 100 -> Plus
chrX 16968609..16970414 138..1943 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:51 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..594 63..656 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:40:30 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..594 63..656 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:32:05 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..594 63..656 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:18:33 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..594 63..656 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:41:55 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..594 63..656 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:46:02 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..1977 1..1977 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:40:30 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..1977 1..1977 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:05 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 37..2013 1..1977 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:18:34 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 1..1977 1..1977 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:41:55 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
CG4949-RA 37..2013 1..1977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:56 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
X 17078872..17079008 1..137 100 -> Plus
X 17079068..17080907 138..1977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:56 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
X 17078872..17079008 1..137 100 -> Plus
X 17079068..17080907 138..1977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:56 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
X 17078872..17079008 1..137 100 -> Plus
X 17079068..17080907 138..1977 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:05 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16972905..16973041 1..137 100 -> Plus
arm_X 16973101..16974940 138..1977 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:53:34 Download gff for LD46305.complete
Subject Subject Range Query Range Percent Splice Strand
X 17087166..17089005 138..1977 100   Plus
X 17086970..17087106 1..137 100 -> Plus

LD46305.hyp Sequence

Translation from 62 to 655

> LD46305.hyp
MSLSDCNNNYIYLTGSEDYALNLAKLCERFATKEKRVLLITSRQQGMAKR
YPWEAHNCSKYLTILQLVDVESTPLRMLEMQDSAESLRSPDLIVFDLQSL
VLDALLRPVMQQCSTNKMVRQIAKCSASFVNYREILANLAEQKAGKSIDT
IVVMSQEPYPMSAAQFKLLIGLYFHGNECHTNFAKLSAKIMVSQRFA*

LD46305.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-PC 197 CG4949-PC 1..197 1..197 1001 100 Plus
CG4949-PA 197 CG4949-PA 1..197 1..197 1001 100 Plus

LD46305.pep Sequence

Translation from 62 to 655

> LD46305.pep
MSLSDCNNNYIYLTGSEDYALNLAKLCERFATKEKRVLLITSRQQGMAKR
YPWEAHNCSKYLTILQLVDVESTPLRMLEMQDSAESLRSPDLIVFDLQSL
VLDALLRPVMQQCSTNKMVRQIAKCSASFVNYREILANLAEQKAGKSIDT
IVVMSQEPYPMSAAQFKLLIGLYFHGNECHTNFAKLSAKIMVSQRFA*

LD46305.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21740-PA 189 GF21740-PA 12..189 3..194 483 53.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19094-PA 197 GG19094-PA 1..197 1..197 1019 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24464-PA 194 GH24464-PA 13..191 10..194 272 36.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4949-PC 197 CG4949-PC 1..197 1..197 1001 100 Plus
CG4949-PA 197 CG4949-PA 1..197 1..197 1001 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14796-PA 198 GI14796-PA 12..194 9..193 393 42.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18275-PA 212 GL18275-PA 12..208 9..194 515 50.3 Plus
Dper\GL17796-PA 99 GL17796-PA 1..95 110..194 307 63.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18547-PA 212 GA18547-PA 12..208 9..194 514 50.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13482-PA 197 GM13482-PA 1..197 1..197 1027 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17325-PA 197 GD17325-PA 1..197 1..197 1032 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19461-PA 195 GJ19461-PA 1..192 1..194 422 43.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15470-PA 200 GK15470-PA 11..199 9..196 412 44.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17640-PA 198 GE17640-PA 1..198 1..197 1020 97 Plus