Clone LD46306 Report

Search the DGRC for LD46306

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:463
Well:6
Vector:pOT2
Associated Gene/TranscriptClic-RA
Protein status:LD46306.pep: gold
Preliminary Size:1504
Sequenced Size:1384

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10997 2001-01-01 Release 2 assignment
CG10997 2001-09-19 Blastp of sequenced clone
CG10997 2003-01-01 Sim4 clustering to Release 3
Clic 2008-04-29 Release 5.5 accounting
Clic 2008-08-15 Release 5.9 accounting
Clic 2008-12-18 5.12 accounting

Clone Sequence Records

LD46306.complete Sequence

1384 bp (1384 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058721

> LD46306.complete
TTTATTCAGCGGCTAACCAATTCAATCGTGAATAGACTTTAGCAGCGCGC
AAATCGTAGAACAGAACGGCATATTTTTTTTAAACACTGCGAGGCGAGCT
TCTTCTTCCCTCCGTCTCTCTGTGTGTGTGTGAGTGTGCTGCCTGTGTGT
GTTACAGCTTGTGTACGTGAGTGTGTGTATTGGCAAAGGAAATTAGCACA
ACAAAAGCGAAAAGGAAACGAACACGCACGCACCTCGTCACGCGGATAAA
GAAAAAAACTCTTCGATCTGATCAGAGATATCGAGAATAAACGATAAAAA
TAATAACAATATCGCAATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA
CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG
GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA
GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA
AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT
TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT
GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT
ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG
TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA
CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA
ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG
ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT
TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT
ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC
AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT
GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGAGTAGG
TTTCCTATGGAGCAGATCCATGCAGCCACACCACACATCAACTAATAGTA
TACAGCAATCGCAACCACAATATTTTGGACAATTTTACAACAGCAGCAAC
TCTGAGGACTATACATAGATGTATACTTAACGGATATAACTACCCATGCA
TATATTATATATAAATATATATATAAACCTACTATATATAACAAGCATAA
CAACAAGTGTTCTTTAAGCAGCCGCGTTGCCTTTCTTCAGCTATGCTTAA
TTTAAACCCCATTTGGAAAAAAAAAAAAAAAAAA

LD46306.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-RA 1815 Clic-RA 51..1433 1..1383 6900 99.9 Plus
Clic.a 1166 Clic.a 68..1052 399..1383 4910 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13705087..13705598 910..399 2560 100 Minus
chrX 22417052 chrX 13712637..13713037 401..1 2005 100 Minus
chrX 22417052 chrX 13704171..13704518 1366..1019 1740 100 Minus
chrX 22417052 chrX 13704585..13704696 1021..910 560 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13814377..13814888 910..399 2560 100 Minus
X 23542271 X 13821924..13822324 401..1 2005 100 Minus
X 23542271 X 13813444..13813808 1383..1019 1810 99.7 Minus
X 23542271 X 13813875..13813986 1021..910 560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13822475..13822986 910..399 2560 100 Minus
X 23527363 X 13830022..13830422 401..1 2005 100 Minus
X 23527363 X 13821542..13821906 1383..1019 1810 99.7 Minus
X 23527363 X 13821973..13822084 1021..910 560 100 Minus
Blast to na_te.dros performed 2019-03-16 20:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5654..5717 1187..1249 119 67.2 Plus
Dm88 4558 Dm88 DM88 4558bp 1059..1104 170..213 116 78.3 Plus

LD46306.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:44:06 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13704328..13704515 1022..1209 100 <- Minus
chrX 13704585..13704695 911..1021 100 <- Minus
chrX 13705087..13705596 401..910 100 <- Minus
chrX 13712638..13712857 181..400 100 == Minus
chrX 13712918..13713037 1..120 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:52 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..783 317..1099 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:58 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..783 317..1099 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:22 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..783 317..1099 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:20 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..783 317..1099 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:52:24 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..783 317..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:57 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..1366 1..1366 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:58 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..1366 1..1366 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:22 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..1349 18..1366 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:21 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..1366 1..1366 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:24 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
Clic-RA 1..1349 18..1366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:06 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
X 13813461..13813805 1022..1366 100 <- Minus
X 13813875..13813985 911..1021 100 <- Minus
X 13814377..13814886 401..910 100 <- Minus
X 13821925..13822324 1..400 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:06 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
X 13813461..13813805 1022..1366 100 <- Minus
X 13813875..13813985 911..1021 100 <- Minus
X 13814377..13814886 401..910 100 <- Minus
X 13821925..13822324 1..400 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:06 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
X 13813461..13813805 1022..1366 100 <- Minus
X 13813875..13813985 911..1021 100 <- Minus
X 13814377..13814886 401..910 100 <- Minus
X 13821925..13822324 1..400 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:22 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13707494..13707838 1022..1366 100 <- Minus
arm_X 13707908..13708018 911..1021 100 <- Minus
arm_X 13708410..13708919 401..910 100 <- Minus
arm_X 13715958..13716357 1..400 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:39 Download gff for LD46306.complete
Subject Subject Range Query Range Percent Splice Strand
X 13822475..13822984 401..910 100 <- Minus
X 13821559..13821903 1022..1366 100 <- Minus
X 13821973..13822083 911..1021 100 <- Minus
X 13830023..13830422 1..400 100   Minus

LD46306.hyp Sequence

Translation from 316 to 1098

> LD46306.hyp
MSEVESQQSQETNGSSKFDVPEIELIIKASTIDGRRKGACLFCQEYFMDL
YLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKI
ERHIMKNIPGGYNLFVQDKEVATLIENLYVKLKLMLVKKDEAKNNALLSH
LRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTH
LTALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQSLKMKKHEELETPTF
TTYIPIDISE*

LD46306.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-PC 260 CG10997-PC 1..260 1..260 1365 100 Plus
Clic-PA 260 CG10997-PA 1..260 1..260 1365 100 Plus

LD46306.pep Sequence

Translation from 316 to 1098

> LD46306.pep
MSEVESQQSQETNGSSKFDVPEIELIIKASTIDGRRKGACLFCQEYFMDL
YLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKI
ERHIMKNIPGGYNLFVQDKEVATLIENLYVKLKLMLVKKDEAKNNALLSH
LRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTH
LTALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQSLKMKKHEELETPTF
TTYIPIDISE*

LD46306.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19090-PA 261 GF19090-PA 3..261 2..260 1346 95 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19483-PA 261 GG19483-PA 3..261 2..260 1386 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17841-PA 263 GH17841-PA 4..263 2..260 1331 94.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Clic-PC 260 CG10997-PC 1..260 1..260 1365 100 Plus
Clic-PA 260 CG10997-PA 1..260 1..260 1365 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21754-PA 263 GI21754-PA 4..263 2..260 1335 95.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15013-PA 263 GL15013-PA 4..263 2..260 1343 95.8 Plus
Dper\GL15377-PA 482 GL15377-PA 295..433 79..217 751 96.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10697-PA 263 GA10697-PA 4..263 2..260 1343 95.8 Plus
Dpse\GA25158-PA 189 GA25158-PA 8..189 79..260 951 96.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17583-PA 261 GM17583-PA 3..261 2..260 1398 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15871-PA 261 GD15871-PA 3..261 2..260 1398 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19132-PA 263 GJ19132-PA 4..263 2..260 1323 93.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25045-PA 262 GK25045-PA 5..262 3..260 1321 94.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16136-PA 261 GE16136-PA 3..261 2..260 1391 99.2 Plus