BDGP Sequence Production Resources |
Search the DGRC for LD46306
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 463 |
Well: | 6 |
Vector: | pOT2 |
Associated Gene/Transcript | Clic-RA |
Protein status: | LD46306.pep: gold |
Preliminary Size: | 1504 |
Sequenced Size: | 1384 |
Gene | Date | Evidence |
---|---|---|
CG10997 | 2001-01-01 | Release 2 assignment |
CG10997 | 2001-09-19 | Blastp of sequenced clone |
CG10997 | 2003-01-01 | Sim4 clustering to Release 3 |
Clic | 2008-04-29 | Release 5.5 accounting |
Clic | 2008-08-15 | Release 5.9 accounting |
Clic | 2008-12-18 | 5.12 accounting |
1384 bp (1384 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058721
> LD46306.complete TTTATTCAGCGGCTAACCAATTCAATCGTGAATAGACTTTAGCAGCGCGC AAATCGTAGAACAGAACGGCATATTTTTTTTAAACACTGCGAGGCGAGCT TCTTCTTCCCTCCGTCTCTCTGTGTGTGTGTGAGTGTGCTGCCTGTGTGT GTTACAGCTTGTGTACGTGAGTGTGTGTATTGGCAAAGGAAATTAGCACA ACAAAAGCGAAAAGGAAACGAACACGCACGCACCTCGTCACGCGGATAAA GAAAAAAACTCTTCGATCTGATCAGAGATATCGAGAATAAACGATAAAAA TAATAACAATATCGCAATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGA CGAACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAG GCCTCGACCATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGA GTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGA AGGTGACGACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAAT TTTGAGGCCACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTT GGAGAACGAAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCT ACAATCTGTTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTG TATGTCAAGTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAA CGCCCTGCTCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCA ACACGCGCTTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTG ATGCCGCGCCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTT TGAAATCCCGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGT ACCAGCTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATC AATCACTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCT GGAGACGCCCACGTTTACCACATACATTCCAATTGATATTTCGGAGTAGG TTTCCTATGGAGCAGATCCATGCAGCCACACCACACATCAACTAATAGTA TACAGCAATCGCAACCACAATATTTTGGACAATTTTACAACAGCAGCAAC TCTGAGGACTATACATAGATGTATACTTAACGGATATAACTACCCATGCA TATATTATATATAAATATATATATAAACCTACTATATATAACAAGCATAA CAACAAGTGTTCTTTAAGCAGCCGCGTTGCCTTTCTTCAGCTATGCTTAA TTTAAACCCCATTTGGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 13705087..13705598 | 910..399 | 2560 | 100 | Minus |
chrX | 22417052 | chrX | 13712637..13713037 | 401..1 | 2005 | 100 | Minus |
chrX | 22417052 | chrX | 13704171..13704518 | 1366..1019 | 1740 | 100 | Minus |
chrX | 22417052 | chrX | 13704585..13704696 | 1021..910 | 560 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 13814377..13814888 | 910..399 | 2560 | 100 | Minus |
X | 23542271 | X | 13821924..13822324 | 401..1 | 2005 | 100 | Minus |
X | 23542271 | X | 13813444..13813808 | 1383..1019 | 1810 | 99.7 | Minus |
X | 23542271 | X | 13813875..13813986 | 1021..910 | 560 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 13822475..13822986 | 910..399 | 2560 | 100 | Minus |
X | 23527363 | X | 13830022..13830422 | 401..1 | 2005 | 100 | Minus |
X | 23527363 | X | 13821542..13821906 | 1383..1019 | 1810 | 99.7 | Minus |
X | 23527363 | X | 13821973..13822084 | 1021..910 | 560 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 13704328..13704515 | 1022..1209 | 100 | <- | Minus |
chrX | 13704585..13704695 | 911..1021 | 100 | <- | Minus |
chrX | 13705087..13705596 | 401..910 | 100 | <- | Minus |
chrX | 13712638..13712857 | 181..400 | 100 | == | Minus |
chrX | 13712918..13713037 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..783 | 317..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..783 | 317..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..783 | 317..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..783 | 317..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..783 | 317..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..1366 | 1..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..1366 | 1..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..1349 | 18..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..1366 | 1..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Clic-RA | 1..1349 | 18..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13813461..13813805 | 1022..1366 | 100 | <- | Minus |
X | 13813875..13813985 | 911..1021 | 100 | <- | Minus |
X | 13814377..13814886 | 401..910 | 100 | <- | Minus |
X | 13821925..13822324 | 1..400 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13813461..13813805 | 1022..1366 | 100 | <- | Minus |
X | 13813875..13813985 | 911..1021 | 100 | <- | Minus |
X | 13814377..13814886 | 401..910 | 100 | <- | Minus |
X | 13821925..13822324 | 1..400 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13813461..13813805 | 1022..1366 | 100 | <- | Minus |
X | 13813875..13813985 | 911..1021 | 100 | <- | Minus |
X | 13814377..13814886 | 401..910 | 100 | <- | Minus |
X | 13821925..13822324 | 1..400 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 13707494..13707838 | 1022..1366 | 100 | <- | Minus |
arm_X | 13707908..13708018 | 911..1021 | 100 | <- | Minus |
arm_X | 13708410..13708919 | 401..910 | 100 | <- | Minus |
arm_X | 13715958..13716357 | 1..400 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13822475..13822984 | 401..910 | 100 | <- | Minus |
X | 13821559..13821903 | 1022..1366 | 100 | <- | Minus |
X | 13821973..13822083 | 911..1021 | 100 | <- | Minus |
X | 13830023..13830422 | 1..400 | 100 | Minus |
Translation from 316 to 1098
> LD46306.hyp MSEVESQQSQETNGSSKFDVPEIELIIKASTIDGRRKGACLFCQEYFMDL YLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKI ERHIMKNIPGGYNLFVQDKEVATLIENLYVKLKLMLVKKDEAKNNALLSH LRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTH LTALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQSLKMKKHEELETPTF TTYIPIDISE*
Translation from 316 to 1098
> LD46306.pep MSEVESQQSQETNGSSKFDVPEIELIIKASTIDGRRKGACLFCQEYFMDL YLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKI ERHIMKNIPGGYNLFVQDKEVATLIENLYVKLKLMLVKKDEAKNNALLSH LRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTH LTALWRYMYHMYQLDAFTQSCPADQDIINHYKLQQSLKMKKHEELETPTF TTYIPIDISE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19090-PA | 261 | GF19090-PA | 3..261 | 2..260 | 1346 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19483-PA | 261 | GG19483-PA | 3..261 | 2..260 | 1386 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17841-PA | 263 | GH17841-PA | 4..263 | 2..260 | 1331 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Clic-PC | 260 | CG10997-PC | 1..260 | 1..260 | 1365 | 100 | Plus |
Clic-PA | 260 | CG10997-PA | 1..260 | 1..260 | 1365 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21754-PA | 263 | GI21754-PA | 4..263 | 2..260 | 1335 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15013-PA | 263 | GL15013-PA | 4..263 | 2..260 | 1343 | 95.8 | Plus |
Dper\GL15377-PA | 482 | GL15377-PA | 295..433 | 79..217 | 751 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10697-PA | 263 | GA10697-PA | 4..263 | 2..260 | 1343 | 95.8 | Plus |
Dpse\GA25158-PA | 189 | GA25158-PA | 8..189 | 79..260 | 951 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17583-PA | 261 | GM17583-PA | 3..261 | 2..260 | 1398 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15871-PA | 261 | GD15871-PA | 3..261 | 2..260 | 1398 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19132-PA | 263 | GJ19132-PA | 4..263 | 2..260 | 1323 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25045-PA | 262 | GK25045-PA | 5..262 | 3..260 | 1321 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16136-PA | 261 | GE16136-PA | 3..261 | 2..260 | 1391 | 99.2 | Plus |