Clone LD46328 Report

Search the DGRC for LD46328

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:463
Well:28
Vector:pOT2
Associated Gene/TranscriptSynd-RB
Protein status:LD46328.pep: gold
Preliminary Size:2215
Sequenced Size:2017

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15694 2001-01-01 Release 2 assignment
CG33094 2001-11-29 Blastp of sequenced clone
CG33094 2003-01-01 Sim4 clustering to Release 3
Synd 2008-04-29 Release 5.5 accounting
Synd 2008-08-15 Release 5.9 accounting
Synd 2008-12-18 5.12 accounting

Clone Sequence Records

LD46328.complete Sequence

2017 bp (2017 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069690

> LD46328.complete
CAGACACACACTCGAGTTGTAGTGCTTTTTTACGCTATTTTGTTATTGGA
AATGTCCCACCACAGCGATGATCAGCTCCTCCAGGCTGGAAGCGATTCCT
TCTGGGAGCCCGGCAACTACAAACGCACCACCAAGCGGATCGAGGATGGT
TACAAACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTGCCGACAT
CGAGAAGGGATATGCGAAAAGCCTGCGCACCTGGTCAAAGAAATGGGGTG
AACTCATTGAGAAAGGCCCGGAATACGGAACCACGGAGGCAGCCTGGAAG
GGCGTTCTGACGGAATCGGAACGCATCTCCGACGTTCACATGAAGATCAA
GGACAATCTCTGCAACGATGTGAACAGCCAGATAAAGACGTGGCAGAAGG
AGAACTACCACCACACGCTTATGCAGATCAAGGAGCGCAAGGACCTGGAG
GATCTGTTCAAGAAGGCCCAGAAACCCTGGGCCAAGCTGCTGGCAAAGGT
CGAGAAGGCCAAAGCGGACTACCATTCGGCCTGCAAGACGGAGCGCAGTG
CTACCAATCAGGAACGCAATGCCAATGCCGATAGCTCGTTGTCGCCGGAT
CAGGTGAAGAAAATGCACGATCGAGTGCAAAAGACCAAAGATCAAGTGCA
AAAGTGCCGGGAAAAGTACGAGCAGGCGATTGCCGAAATCACCAAATACA
ATTCGGTGTACATCGAGGACATGACATCCGTGTTTGAAAAGTGCCAAACC
TTTGAGAAGACGCGTTTGCAGTTCTTCAAAGAAATCCTGTTCAACGTGCA
CTCGTGCCTGGACCTCACAAAAGTGCAAAGCCTGCCCCAAATCTACGAGG
AGTTCTCCCACACGATCAACAATGCAGACCAGCAGAAAGACCTAAAATGG
TGGTCGAACAATCATGGCATTAACATGGCCATGAATTGGCCATCATTTGT
GGAATATACGGAGGAGTTCCGTGACATTGCCAAGGGCAACAAATCAAAAG
AGGCACTGCCGGCAGCACCCATCACGCTCATCAACCAGCGACCTGTGGCC
GAGGATGTGCACGAATACCCCCAGACAAACAGCCTGAAGAAGAACACCAG
CACCTTGAGCAGTGTCAGCAGCAGAGCGAGTGTGAAGAGCGAAATAGCGA
CCACGCAATCCTCAGTCACCACATCGGAAGCCAAAACATCGGCGGCGGTT
GCCGGCGCTGCGACGGCAACGGCAGCAGCAACAGCGGCGTCAGCGGCATC
CAATCGCAACTCGAGCGTAACCAACGGCAACGGCAAAGTCGATGCAAATC
CATTCGACGAGGAGGAGGAGTGGGACGAGAGCGACAACGTGCTGGTGGAC
AACGGTGAGCCAGGCGTGCCGGTCAAAGCGCTGTATGATTACGAGGGCGC
TGAAAGTGATGAGCTCACATTCAAGCAAGGTGATGTTTTCGAGAAGCTCG
AAGATGAAGACGAACAAGGCTGGTGCAAGGGACGCATGAATGGGCGCGTC
GGACTGTATCCGGCCAACTATGTGGAGACCGCGTAAGCGGGCGTAGGGGA
AGAATAGGGGAAGTCGTTAAGCAGTTATATACGCGCAGATATGTATATGC
AGCATAACACAGAGGTTAGAGACGCATTACGGATTGCGTATTCAGTAAAA
GAGTCGTTGATGAAAAATTACCATACATATGTATTAGAAATTGTTATGAG
CAATCGCTTGCACTATTCGTACTTATCCGGACGATAGTGCGGCATCTAAG
GCATTGGGCATCGAGTGGATGCAGCGATCCCAACACCGATACCGATCATC
CAACCAACCTACCAATCAACTCACCAACAGTAGCAATGCGGCCGTTAGCA
GGCCGATACGAACATGCAGATATGTAACAGCAAACTTAGCGAATGTCGTC
AACAGAACAATAAGTGTAAGCGTCAATGTACGGAATGACATTACAAATTA
ATTGTATTATGTAATATTTATGCTATGTATAACAAACTGAAACTGAAACA
AAAAAAAAAAAAAAAAA

LD46328.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Synd-RB 2499 Synd-RB 171..2168 1..1998 9990 100 Plus
Synd.a 2434 Synd.a 171..2171 1..1998 9935 99.8 Plus
Synd.c 2330 Synd.c 118..2068 48..1998 9755 100 Plus
Synd.c 2330 Synd.c 50..98 1..49 245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16663168..16663738 1428..1998 2855 100 Plus
chr3R 27901430 chr3R 16661462..16661803 264..605 1710 100 Plus
chr3R 27901430 chr3R 16661912..16662140 602..830 1145 100 Plus
chr3R 27901430 chr3R 16662554..16662766 1059..1271 1050 99.5 Plus
chr3R 27901430 chr3R 16662937..16663097 1272..1432 805 100 Plus
chr3R 27901430 chr3R 16662202..16662325 829..952 620 100 Plus
chr3R 27901430 chr3R 16662391..16662503 951..1063 565 100 Plus
chr3R 27901430 chr3R 16659754..16659864 156..266 555 100 Plus
chr3R 27901430 chr3R 16659103..16659210 48..155 540 100 Plus
chr3R 27901430 chr3R 16656741..16656789 1..49 245 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20839289..20839859 1428..1998 2855 100 Plus
3R 32079331 3R 20837583..20837924 264..605 1710 100 Plus
3R 32079331 3R 20838033..20838261 602..830 1145 100 Plus
3R 32079331 3R 20838675..20838887 1059..1271 1050 99.5 Plus
3R 32079331 3R 20839058..20839218 1272..1432 805 100 Plus
3R 32079331 3R 20838323..20838446 829..952 620 100 Plus
3R 32079331 3R 20838512..20838624 951..1063 565 100 Plus
3R 32079331 3R 20835875..20835985 156..266 555 100 Plus
3R 32079331 3R 20835224..20835331 48..155 540 100 Plus
3R 32079331 3R 20832826..20832874 1..49 245 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20580120..20580690 1428..1998 2855 100 Plus
3R 31820162 3R 20578414..20578755 264..605 1710 100 Plus
3R 31820162 3R 20578864..20579092 602..830 1145 100 Plus
3R 31820162 3R 20579506..20579718 1059..1271 1050 99.5 Plus
3R 31820162 3R 20579889..20580049 1272..1432 805 100 Plus
3R 31820162 3R 20579154..20579277 829..952 620 100 Plus
3R 31820162 3R 20579343..20579455 951..1063 565 100 Plus
3R 31820162 3R 20576706..20576816 156..266 555 100 Plus
3R 31820162 3R 20576055..20576162 48..155 540 100 Plus
3R 31820162 3R 20573657..20573705 1..49 245 100 Plus
Blast to na_te.dros performed 2019-03-16 20:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6923 1076..1281 204 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2275..2525 1029..1286 192 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6897 1141..1285 186 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2420 1172..1286 167 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6820 1217..1286 158 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6798 1217..1285 153 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6876 1179..1285 153 61.5 Plus
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3723..3786 1282..1221 144 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6841 1163..1286 142 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6859 1146..1286 139 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2393 1191..1286 138 64.1 Plus
roo 9092 roo DM_ROO 9092bp 1059..1176 1188..1297 129 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1590 1156..1253 126 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1603 1211..1287 124 65.8 Plus
roo 9092 roo DM_ROO 9092bp 1088..1163 1172..1247 119 61.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3309 1154..1235 119 64.8 Plus

LD46328.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:13:25 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16656741..16656788 1..48 100 -> Plus
chr3R 16659104..16659210 49..155 100 -> Plus
chr3R 16659754..16659863 156..265 100 -> Plus
chr3R 16661464..16661801 266..603 100 -> Plus
chr3R 16661914..16662140 604..830 100 -> Plus
chr3R 16662204..16662324 831..951 100 -> Plus
chr3R 16662392..16662502 952..1062 100 -> Plus
chr3R 16662558..16662684 1063..1189 100 == Plus
chr3R 16662743..16662766 1248..1271 100 -> Plus
chr3R 16662937..16663094 1272..1429 100 -> Plus
chr3R 16663170..16663738 1430..1999 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:54 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 1..1485 52..1536 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:25:15 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 1..1485 52..1536 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:40:49 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 1..1485 52..1536 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:52:16 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 1..1485 52..1536 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:55:13 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 1..1485 52..1536 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:01:01 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 42..2039 1..1999 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:25:15 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 42..2039 1..1999 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:49 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 28..2022 1..1995 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:52:17 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 42..2039 1..1999 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:13 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
Synd-RB 28..2022 1..1995 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:25 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20832826..20832873 1..48 100 -> Plus
3R 20835225..20835331 49..155 100 -> Plus
3R 20835875..20835984 156..265 100 -> Plus
3R 20837585..20837922 266..603 100 -> Plus
3R 20838035..20838261 604..830 100 -> Plus
3R 20838325..20838445 831..951 100 -> Plus
3R 20838513..20838623 952..1062 100 -> Plus
3R 20838679..20838887 1063..1271 100 -> Plus
3R 20839058..20839215 1272..1429 100 -> Plus
3R 20839291..20839859 1430..1999 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:25 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20832826..20832873 1..48 100 -> Plus
3R 20835225..20835331 49..155 100 -> Plus
3R 20835875..20835984 156..265 100 -> Plus
3R 20837585..20837922 266..603 100 -> Plus
3R 20838035..20838261 604..830 100 -> Plus
3R 20838325..20838445 831..951 100 -> Plus
3R 20838513..20838623 952..1062 100 -> Plus
3R 20838679..20838887 1063..1271 100 -> Plus
3R 20839058..20839215 1272..1429 100 -> Plus
3R 20839291..20839859 1430..1999 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:25 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20832826..20832873 1..48 100 -> Plus
3R 20835225..20835331 49..155 100 -> Plus
3R 20835875..20835984 156..265 100 -> Plus
3R 20837585..20837922 266..603 100 -> Plus
3R 20838035..20838261 604..830 100 -> Plus
3R 20838325..20838445 831..951 100 -> Plus
3R 20838513..20838623 952..1062 100 -> Plus
3R 20838679..20838887 1063..1271 100 -> Plus
3R 20839058..20839215 1272..1429 100 -> Plus
3R 20839291..20839859 1430..1999 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:49 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16663757..16663983 604..830 100 -> Plus
arm_3R 16664047..16664167 831..951 100 -> Plus
arm_3R 16664235..16664345 952..1062 100 -> Plus
arm_3R 16664401..16664609 1063..1271 100 -> Plus
arm_3R 16664780..16664937 1272..1429 100 -> Plus
arm_3R 16658548..16658595 1..48 100 -> Plus
arm_3R 16660947..16661053 49..155 100 -> Plus
arm_3R 16661597..16661706 156..265 100 -> Plus
arm_3R 16663307..16663644 266..603 100 -> Plus
arm_3R 16665013..16665581 1430..1999 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:33 Download gff for LD46328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20578416..20578753 266..603 100 -> Plus
3R 20578866..20579092 604..830 100 -> Plus
3R 20579156..20579276 831..951 100 -> Plus
3R 20579344..20579454 952..1062 100 -> Plus
3R 20579510..20579718 1063..1271 100 -> Plus
3R 20579889..20580046 1272..1429 100 -> Plus
3R 20580122..20580690 1430..1999 99   Plus
3R 20573657..20573704 1..48 100 -> Plus
3R 20576056..20576162 49..155 100 -> Plus
3R 20576706..20576815 156..265 100 -> Plus

LD46328.hyp Sequence

Translation from 0 to 1535

> LD46328.hyp
QTHTRVVVLFYAILLLEMSHHSDDQLLQAGSDSFWEPGNYKRTTKRIEDG
YKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWK
GVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLE
DLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPD
QVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQT
FEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTINNADQQKDLKW
WSNNHGINMAMNWPSFVEYTEEFRDIAKGNKSKEALPAAPITLINQRPVA
EDVHEYPQTNSLKKNTSTLSSVSSRASVKSEIATTQSSVTTSEAKTSAAV
AGAATATAAATAASAASNRNSSVTNGNGKVDANPFDEEEEWDESDNVLVD
NGEPGVPVKALYDYEGAESDELTFKQGDVFEKLEDEDEQGWCKGRMNGRV
GLYPANYVETA*

LD46328.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Synd-PB 494 CG33094-PB 1..494 18..511 2593 100 Plus
Synd-PD 495 CG33094-PD 1..495 18..511 2581 99.8 Plus
Synd-PC 495 CG33094-PC 1..495 18..511 2581 99.8 Plus
Abp1-PA 531 CG10083-PA 355..528 337..509 158 28.4 Plus
Amph-PB 502 CG8604-PB 153..498 189..507 156 23.4 Plus

LD46328.pep Sequence

Translation from 51 to 1535

> LD46328.pep
MSHHSDDQLLQAGSDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADI
EKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIK
DNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKV
EKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQ
KCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVH
SCLDLTKVQSLPQIYEEFSHTINNADQQKDLKWWSNNHGINMAMNWPSFV
EYTEEFRDIAKGNKSKEALPAAPITLINQRPVAEDVHEYPQTNSLKKNTS
TLSSVSSRASVKSEIATTQSSVTTSEAKTSAAVAGAATATAAATAASAAS
NRNSSVTNGNGKVDANPFDEEEEWDESDNVLVDNGEPGVPVKALYDYEGA
ESDELTFKQGDVFEKLEDEDEQGWCKGRMNGRVGLYPANYVETA*

LD46328.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17989-PA 494 GF17989-PA 1..490 1..492 2339 92.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24166-PA 495 GG24166-PA 1..495 1..494 2635 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17273-PA 506 GH17273-PA 1..502 1..492 2261 88 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Synd-PB 494 CG33094-PB 1..494 1..494 2593 100 Plus
Synd-PD 495 CG33094-PD 1..495 1..494 2581 99.8 Plus
Synd-PC 495 CG33094-PC 1..495 1..494 2581 99.8 Plus
Abp1-PA 531 CG10083-PA 355..528 320..492 158 28.4 Plus
Amph-PB 502 CG8604-PB 153..498 172..490 156 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10597-PA 498 GI10597-PA 1..495 1..493 2265 89.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24280-PA 509 GL24280-PA 1..505 1..492 2239 87.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17276-PA 505 GA17276-PA 1..501 1..492 2243 88.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23138-PA 494 GM23138-PA 1..494 1..494 2651 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19377-PA 494 GD19377-PA 1..494 1..494 2661 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22953-PA 501 GJ22953-PA 1..497 1..492 2266 87.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22472-PA 501 GK22472-PA 1..497 1..492 2311 91.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25689-PA 492 GE25689-PA 1..492 1..494 2621 98.2 Plus