LD46351.complete Sequence
1831 bp (1831 high quality bases) assembled on 2001-12-16
GenBank Submission: AY070890
> LD46351.complete
CAAAACCAAAAAATAAAAATATATATAAAACATAATTGCCACATTCCTAG
CCCTTTGTAGACTTGATTTCCTTTCAACCATGCCCTTACTTTAATGTTGG
TACATACATACTTACATACATATTTACTACTGATTGATTTGATTTTGAGT
TACTTTTGAGATACTGTTCGTTGTCACCAATTGAGACGCTTTGATTTTGT
TTTTTGAATATTATATATAACTCTTTGTATTTGTACATGATTATGATTAT
TAATGTTTATATTAATCCACTGCTAACAAAAATCATCATCAACTTTGTAC
AGTAAAACCATGAGCGAGTTTTAAAGTAAACCAAATGAAGATTAACCCAA
ATCTAAAGCTTCGGCTTGTGACGAAGTTGAAAGTAGGATTTCCAAGATTG
GTAGCGGTGCATGAAGAGATGTACATAAACACACTTGTAATATACAACTC
CATACCTCTAAGTTCACCAATGTTATCTCTCTTAAGCTTCAAATTTGATT
GTGATCCGAGCGAACGGTTTGTAAATCTCCTTATTATGGCTAATAATGTT
TTTTGGATATAATTCTTGCCTTGTTTTTTTTTTACCTAATCAGATCGAGT
CTGCCAAGCTCTTGGAAATCGTACAACCCAAATACCCAAATGCCCATTCC
ATTTCGAAAAGAATGCCTTTTAAATTTCATTTACCGGTTTGTTAAGTTTC
CTTCAGTTGTCCGATCCCCAAAATGCACCCAACCGCACCCGAATTACCCA
CCACAATCCCCAATCACAACTCCCGCTTTTGAGTTCTGTTTTCGCTTTAA
AAAAAAAAAAAAAAAAAAAGGATTAAAACAGGAAAATTCACTGGTTTCCA
TAGAGCCTACGAAAGCGAATTCGAGACACATCTGTATAGAAAGCCATGCG
CTCATTACTTTACCTACTCTCTGTCATACTTTGTTTTCTAATTCAATTTC
GTGGATGTCAACAAGAAAGGATTTCAGCTAAATTTTGTGCTCCTTTGCAC
ATGCCTGTGAGAAAGAAAAATTGAGAAGAAGAAAGATAACGAAGCACGGC
AAAGTGATGATATGATATGTACATATCTAGCCACGATTATACAATATCGA
TTACATCTTTGTATGATGATATGATGATGAAATGTTGGGATGGGCTGCCC
GGTGACCGCTAGTATAATTGTCTCATTTATCAATTACTTATTGTACTTTC
TTCTTACTACATTCTACCTAACCTAACAACCTACTACTACTTTACCTTAC
TACTTACCCTACTACTACTATTCGTACTACTATTTGCTCTATGGGTTCAC
CATTCTGTGTTGTTCTTTCCTTTCTGTGTGTCCGTGTTTGTGTCCTTTTC
AGTTCGGTTCCCCAGCTTTGGTTGTTTCGATTTTTTGGTTTCCTCAGTTG
CTTTGTTGCTGTTTAATTAGTTTCCATTCAGCTTCGTTCTGTTATGTTCT
GTTCTGTTCGGTTGAGTTCAGTGCAGTCGGTACTCCCCTACTCTGTACTC
TGTACATACATGTGTGTAATTTAATTAATGTAATTTTAACATGAAACTCA
ACAATTTCTGCTCTCGGTTACTCATAAGTTACAATTGTGTCGTTTGTTCG
TTCGTTCGTTCGTTCGTTAGTTCGTTGGTTGGTTCAATCCTTTGTTGTTC
CTACTCCTAGCTGTGTGTGTCTCTCGTTTATCATTGTTGTTCGTGTTGTG
CGTGTGCGTTAGATTGTTTTTTGGGCCACCATACTCTGCTGTATACTGCA
ATTTAGCCCGGCTATCTAATATAACTCTGCGCTTAACGGTCCGTCTGACC
GCAATACAAAAACAAAAAAAAAAAAAAAAAA
LD46351.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 19:38:18 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 17150270..17151986 | 1813..95 | 8455 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 17148260..17148357 | 98..1 | 475 | 99 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21326440..21328173 | 1828..95 | 8670 | 100 | Minus |
3R | 32079331 | 3R | 21324443..21324540 | 98..1 | 490 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 21067271..21069004 | 1828..95 | 8670 | 100 | Minus |
3R | 31820162 | 3R | 21065274..21065371 | 98..1 | 490 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 11:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1391..1490 | 292..195 | 143 | 64.4 | Minus |
opus | 7521 | opus OPUS 7521bp | 6088..6260 | 264..90 | 131 | 55.9 | Minus |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 2455..2609 | 356..197 | 120 | 56.2 | Minus |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6065..6173 | 1629..1515 | 119 | 61.2 | Minus |
Ivk | 5402 | Ivk IVK 5402bp | 4945..5000 | 426..369 | 113 | 70.7 | Minus |
LD46351.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:10:03 Download gff for
LD46351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 17150853..17151986 | 95..1230 | 97 | == | Minus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 19:26:37 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:37 Download gff for
LD46351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14213-RB | 1395..1417 | 103..125 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:03 Download gff for
LD46351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21326455..21328173 | 95..1813 | 100 | == | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:03 Download gff for
LD46351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21326455..21328173 | 95..1813 | 100 | == | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:03 Download gff for
LD46351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21326455..21328173 | 95..1813 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:55 Download gff for
LD46351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17152177..17153895 | 95..1813 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:55 Download gff for
LD46351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17152177..17153895 | 95..1813 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:55 Download gff for
LD46351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17152177..17153895 | 95..1813 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:23 Download gff for
LD46351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21067286..21069004 | 95..1813 | 100 | == | Minus |
LD46351.hyp Sequence
Translation from 572 to 913
> LD46351.hyp
MPIPFRKECLLNFIYRFVKFPSVVRSPKCTQPHPNYPPQSPITTPAFEFC
FRFKKKKKKKGLKQENSLVSIEPTKANSRHICIESHALITLPTLCHTLFS
NSISWMSTRKDFS*
Sequence LD46351.hyp has no blast hits.
LD46351.pep Sequence
Translation from 639 to 980
> LD46351.pep
MPIPFRKECLLNFIYRFVKFPSVVRSPKCTQPHPNYPPQSPITTPAFEFC
FRFKKKKKKKGLKQENSLVSIEPTKANSRHICIESHALITLPTLCHTLFS
NSISWMSTRKDFS*
LD46351.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19529-PA | 69 | GM19529-PA | 1..51 | 1..51 | 257 | 98 | Plus |