Clone LD46351 Report

Search the DGRC for LD46351

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:463
Well:51
Vector:pOT2
Associated Gene/TranscriptCG14213-RB
Protein status:LD46351.pep: validated full length
Preliminary Size:1923
Sequenced Size:1831

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31182 2001-12-16 Blastp of sequenced clone

Clone Sequence Records

LD46351.complete Sequence

1831 bp (1831 high quality bases) assembled on 2001-12-16

GenBank Submission: AY070890

> LD46351.complete
CAAAACCAAAAAATAAAAATATATATAAAACATAATTGCCACATTCCTAG
CCCTTTGTAGACTTGATTTCCTTTCAACCATGCCCTTACTTTAATGTTGG
TACATACATACTTACATACATATTTACTACTGATTGATTTGATTTTGAGT
TACTTTTGAGATACTGTTCGTTGTCACCAATTGAGACGCTTTGATTTTGT
TTTTTGAATATTATATATAACTCTTTGTATTTGTACATGATTATGATTAT
TAATGTTTATATTAATCCACTGCTAACAAAAATCATCATCAACTTTGTAC
AGTAAAACCATGAGCGAGTTTTAAAGTAAACCAAATGAAGATTAACCCAA
ATCTAAAGCTTCGGCTTGTGACGAAGTTGAAAGTAGGATTTCCAAGATTG
GTAGCGGTGCATGAAGAGATGTACATAAACACACTTGTAATATACAACTC
CATACCTCTAAGTTCACCAATGTTATCTCTCTTAAGCTTCAAATTTGATT
GTGATCCGAGCGAACGGTTTGTAAATCTCCTTATTATGGCTAATAATGTT
TTTTGGATATAATTCTTGCCTTGTTTTTTTTTTACCTAATCAGATCGAGT
CTGCCAAGCTCTTGGAAATCGTACAACCCAAATACCCAAATGCCCATTCC
ATTTCGAAAAGAATGCCTTTTAAATTTCATTTACCGGTTTGTTAAGTTTC
CTTCAGTTGTCCGATCCCCAAAATGCACCCAACCGCACCCGAATTACCCA
CCACAATCCCCAATCACAACTCCCGCTTTTGAGTTCTGTTTTCGCTTTAA
AAAAAAAAAAAAAAAAAAAGGATTAAAACAGGAAAATTCACTGGTTTCCA
TAGAGCCTACGAAAGCGAATTCGAGACACATCTGTATAGAAAGCCATGCG
CTCATTACTTTACCTACTCTCTGTCATACTTTGTTTTCTAATTCAATTTC
GTGGATGTCAACAAGAAAGGATTTCAGCTAAATTTTGTGCTCCTTTGCAC
ATGCCTGTGAGAAAGAAAAATTGAGAAGAAGAAAGATAACGAAGCACGGC
AAAGTGATGATATGATATGTACATATCTAGCCACGATTATACAATATCGA
TTACATCTTTGTATGATGATATGATGATGAAATGTTGGGATGGGCTGCCC
GGTGACCGCTAGTATAATTGTCTCATTTATCAATTACTTATTGTACTTTC
TTCTTACTACATTCTACCTAACCTAACAACCTACTACTACTTTACCTTAC
TACTTACCCTACTACTACTATTCGTACTACTATTTGCTCTATGGGTTCAC
CATTCTGTGTTGTTCTTTCCTTTCTGTGTGTCCGTGTTTGTGTCCTTTTC
AGTTCGGTTCCCCAGCTTTGGTTGTTTCGATTTTTTGGTTTCCTCAGTTG
CTTTGTTGCTGTTTAATTAGTTTCCATTCAGCTTCGTTCTGTTATGTTCT
GTTCTGTTCGGTTGAGTTCAGTGCAGTCGGTACTCCCCTACTCTGTACTC
TGTACATACATGTGTGTAATTTAATTAATGTAATTTTAACATGAAACTCA
ACAATTTCTGCTCTCGGTTACTCATAAGTTACAATTGTGTCGTTTGTTCG
TTCGTTCGTTCGTTCGTTAGTTCGTTGGTTGGTTCAATCCTTTGTTGTTC
CTACTCCTAGCTGTGTGTGTCTCTCGTTTATCATTGTTGTTCGTGTTGTG
CGTGTGCGTTAGATTGTTTTTTGGGCCACCATACTCTGCTGTATACTGCA
ATTTAGCCCGGCTATCTAATATAACTCTGCGCTTAACGGTCCGTCTGACC
GCAATACAAAAACAAAAAAAAAAAAAAAAAA

LD46351.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 19:38:18 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17150270..17151986 1813..95 8455 99.7 Minus
chr3R 27901430 chr3R 17148260..17148357 98..1 475 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21326440..21328173 1828..95 8670 100 Minus
3R 32079331 3R 21324443..21324540 98..1 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21067271..21069004 1828..95 8670 100 Minus
3R 31820162 3R 21065274..21065371 98..1 490 100 Minus
Blast to na_te.dros performed 2019-03-16 11:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1391..1490 292..195 143 64.4 Minus
opus 7521 opus OPUS 7521bp 6088..6260 264..90 131 55.9 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 2455..2609 356..197 120 56.2 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6065..6173 1629..1515 119 61.2 Minus
Ivk 5402 Ivk IVK 5402bp 4945..5000 426..369 113 70.7 Minus

LD46351.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:10:03 Download gff for LD46351.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17150853..17151986 95..1230 97 == Minus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 19:26:37 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:37 Download gff for LD46351.complete
Subject Subject Range Query Range Percent Splice Strand
CG14213-RB 1395..1417 103..125 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:03 Download gff for LD46351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21326455..21328173 95..1813 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:03 Download gff for LD46351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21326455..21328173 95..1813 100 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:03 Download gff for LD46351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21326455..21328173 95..1813 100 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:55 Download gff for LD46351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17152177..17153895 95..1813 100 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:55 Download gff for LD46351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17152177..17153895 95..1813 100 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:55 Download gff for LD46351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17152177..17153895 95..1813 100 == Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:23 Download gff for LD46351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21067286..21069004 95..1813 100 == Minus

LD46351.hyp Sequence

Translation from 572 to 913

> LD46351.hyp
MPIPFRKECLLNFIYRFVKFPSVVRSPKCTQPHPNYPPQSPITTPAFEFC
FRFKKKKKKKGLKQENSLVSIEPTKANSRHICIESHALITLPTLCHTLFS
NSISWMSTRKDFS*
Sequence LD46351.hyp has no blast hits.

LD46351.pep Sequence

Translation from 639 to 980

> LD46351.pep
MPIPFRKECLLNFIYRFVKFPSVVRSPKCTQPHPNYPPQSPITTPAFEFC
FRFKKKKKKKGLKQENSLVSIEPTKANSRHICIESHALITLPTLCHTLFS
NSISWMSTRKDFS*

LD46351.pep Blast Records

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19529-PA 69 GM19529-PA 1..51 1..51 257 98 Plus