Clone LD46437 Report

Search the DGRC for LD46437

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:464
Well:37
Vector:pOT2
Associated Gene/TranscriptSelD-RA
Protein status:LD46437.pep: gold
Preliminary Size:1738
Sequenced Size:1524

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8553 2001-01-01 Release 2 assignment
CG8553 2002-04-04 Blastp of sequenced clone
CG8553 2003-01-01 Sim4 clustering to Release 3
SelD 2008-04-29 Release 5.5 accounting
SelD 2008-08-15 Release 5.9 accounting
SelD 2008-12-18 5.12 accounting

Clone Sequence Records

LD46437.complete Sequence

1524 bp (1524 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095058

> LD46437.complete
TGACATCTCGCTCGTTGGAAAAGCAAAAACCAGGCGCAAAATAAATATAA
TTTGCTAACGTTACTCTACAATTATCTTTGTACAATCGCACAAGCAAACC
TATAAAGCAAGATGAGCTACGCCGCTGATGTGCTGAACTCGGCCCATTTG
GAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCGATCCCAC
GGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGATCTAA
AGGGGCGCGGCTGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGGTGTCC
GCCCTGCAGCAGGACTACTCTGCCCAGGACCAGGAACCGCAGTTTCTCAA
CGTGGCCATTCCCCGCATCGGTATTGGCCTGGACTGCTCCGTCATTCCGC
TGCGACACGGCGGACTCTGCCTGGTGCAGACCACCGATTTCTTTTACCCC
ATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCCAATGTGCT
CAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCTGATGC
TGTTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGGTCATT
CCGCTGATAATGCGAGGCTTTAAGGACTCCGCTTTGGAGGCAGGCACCAC
TGTGACTGGAGGCCAGAGCGTGGTCAATCCGTGGTGCACCATTGGTGGGG
TTGCCTCGACCATTTGCCAGCCAAATGAGTATATTGTGCCAGATAATGCC
GTGGTAGGGGATGTACTGGTGCTAACCAAGCCACTGGGCACCCAAGTGGC
CGTGAATGCCCACCAGTGGATTGACCAGCCGGAGCGCTGGAACCGCATTA
AGCTGGTGGTGTCCGAAGAAGATGTACGCAAGGCCTACCACCGGGCGATG
AACTCTATGGCTCGCCTCAACCGCGTAGCCGCTCGCCTCATGCACAAGTA
CAATGCCCACGGAGCCACCGATATTACTGGATTCGGACTACTAGGCCACG
CTCAAACCCTGGCTGCACATCAGAAAAAGGATGTCTCCTTTGTTATCCAC
AATCTGCCGGTGATCGCCAAGATGGCTGCAGTGGCCAAAGCCTGCGGCAA
CATGTTCCAGCTGCTGCAGGGCCACTCGGCGGAGACCTCGGGAGGATTAC
TGATCTGCCTGCCGCGAGAGCAGGCCGCTGCTTATTGCAAGGACATCGAG
AAGCAGGAGGGCTACCAGGCCTGGATCATCGGCATCGTTGAGAAGGGCAA
TAAGACCGCACGCATCATCGACAAGCCCCGCGTCATTGAGGTGCCCGCCA
AGGACTAGGTCTCCATTGCCTGACCATCTGCTATTGTCTACCTTAAGTAT
CTTAATATTAACGTAACGGCTGCTACATTCAGTTGTAACCGGCATGATCG
GTCTTTGTTTTTTATAAAAAAGCTTATCAACTACAGATTCACTGATCATT
ATAATCTTGGACGTCTCTACTGCAATACGAGTGAATAAAATGAAAACACT
TGAAAAAAAAAAAAAAAAAAAAAA

LD46437.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
SelD-RA 1596 SelD-RA 57..1560 1..1504 7520 100 Plus
SelD-RB 1883 SelD-RB 481..1883 100..1502 7015 100 Plus
SelD-RB 1883 SelD-RB 16..114 1..99 495 100 Plus
conv.a 3634 conv.a 1..38 137..100 190 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10156077..10157479 1502..100 6940 99.6 Minus
chr2R 21145070 chr2R 10157846..10157944 99..1 495 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14268770..14270174 1504..100 7025 100 Minus
2R 25286936 2R 14270541..14270639 99..1 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14269969..14271373 1504..100 7025 100 Minus
2R 25260384 2R 14271740..14271838 99..1 495 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:07:42 has no hits.

LD46437.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:08:22 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10156077..10157479 100..1502 99 <- Minus
chr2R 10157846..10157944 1..99 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:06 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 1..1197 112..1308 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:15:34 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 1..1197 112..1308 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:04 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RB 1..1197 112..1308 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:20 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 1..1197 112..1308 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:40 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RB 1..1197 112..1308 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:30 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 16..1517 1..1502 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:15:33 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 16..1517 1..1502 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:04 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 20..1521 1..1502 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:20 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 16..1517 1..1502 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:40 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
SelD-RA 20..1521 1..1502 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:22 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14268772..14270174 100..1502 100 <- Minus
2R 14270541..14270639 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:22 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14268772..14270174 100..1502 100 <- Minus
2R 14270541..14270639 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:22 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14268772..14270174 100..1502 100 <- Minus
2R 14270541..14270639 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:04 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10156277..10157679 100..1502 100 <- Minus
arm_2R 10158046..10158144 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:49 Download gff for LD46437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14269971..14271373 100..1502 100 <- Minus
2R 14271740..14271838 1..99 100   Minus

LD46437.pep Sequence

Translation from 111 to 1307

> LD46437.pep
MSYAADVLNSAHLELHGGGDAELRRPFDPTAHDLDASFRLTRFADLKGRG
CKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRIGIGLDCSVIPLRHG
GLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNMLMLLAV
STKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVAST
ICQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLVV
SEEDVRKAYHRAMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTL
AAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICL
PREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPRVIEVPAKD*

LD46437.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11358-PA 398 GF11358-PA 1..398 1..398 2130 99.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22431-PA 398 GG22431-PA 1..398 1..398 2135 99.7 Plus
Dere\GG10111-PA 318 GG10111-PA 1..315 87..393 763 48.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20096-PA 398 GH20096-PA 1..398 1..398 2122 98.7 Plus
Dgri\GH13308-PA 379 GH13308-PA 65..377 89..394 757 46.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
SelD-PA 398 CG8553-PA 1..398 1..398 2073 100 Plus
SelD-PB 398 CG8553-PB 1..398 1..398 2073 100 Plus
Sps2-PC 370 CG5025-PC 2..359 27..386 796 45.2 Plus
Sps2-PA 370 CG5025-PA 2..359 27..386 796 45.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18994-PA 398 GI18994-PA 1..398 1..398 2124 99 Plus
Dmoj\GI18171-PA 314 GI18171-PA 1..312 90..394 741 47.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10201-PA 398 GL10201-PA 1..398 1..398 2126 99.2 Plus
Dper\GL22405-PA 364 GL22405-PA 7..364 18..354 956 53.1 Plus
Dper\GL14585-PA 367 GL14585-PA 5..365 28..394 762 46.3 Plus
Dper\GL14807-PA 491 GL14807-PA 4..366 27..394 742 42.9 Plus
Dper\GL23378-PA 318 GL23378-PA 1..316 90..394 704 47.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21160-PA 398 GA21160-PA 1..398 1..398 2126 99.2 Plus
Dpse\GA28664-PA 395 GA28664-PA 10..392 20..394 1068 54.4 Plus
Dpse\GA28926-PA 409 GA28926-PA 23..406 26..393 1060 54.6 Plus
Dpse\GA25337-PA 368 GA25337-PA 4..366 27..394 751 43.1 Plus
Dpse\GA24104-PA 369 GA24104-PA 11..367 34..394 735 45.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20218-PA 398 GM20218-PA 1..398 1..398 2138 100 Plus
Dsec\GM18202-PA 315 GM18202-PA 1..313 90..394 755 48.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25689-PA 398 GD25689-PA 1..398 1..398 2138 100 Plus
Dsim\GD23681-PA 318 GD23681-PA 1..316 87..394 761 48.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19958-PA 398 GJ19958-PA 1..398 1..398 2124 99 Plus
Dvir\GJ14612-PA 627 GJ14612-PA 313..613 89..383 778 49.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20859-PA 398 GK20859-PA 1..398 1..398 2105 98 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12321-PA 398 GE12321-PA 1..398 1..398 2135 99.7 Plus
Dyak\GE18926-PA 250 GE18926-PA 1..222 90..306 611 52.3 Plus

LD46437.hyp Sequence

Translation from 111 to 1307

> LD46437.hyp
MSYAADVLNSAHLELHGGGDAELRRPFDPTAHDLDASFRLTRFADLKGRG
CKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRIGIGLDCSVIPLRHG
GLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNMLMLLAV
STKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVAST
ICQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLVV
SEEDVRKAYHRAMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTL
AAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICL
PREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPRVIEVPAKD*

LD46437.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
SelD-PA 398 CG8553-PA 1..398 1..398 2073 100 Plus
SelD-PB 398 CG8553-PB 1..398 1..398 2073 100 Plus
Sps2-PC 370 CG5025-PC 2..359 27..386 796 45.2 Plus
Sps2-PA 370 CG5025-PA 2..359 27..386 796 45.2 Plus