Clone LD46465 Report

Search the DGRC for LD46465

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:464
Well:65
Vector:pOT2
Associated Gene/TranscriptCG9890-RA
Protein status:LD46465.pep: gold
Preliminary Size:1650
Sequenced Size:1484

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9890 2001-01-01 Release 2 assignment
CG9890 2001-10-10 Blastp of sequenced clone
CG9890 2003-01-01 Sim4 clustering to Release 3
CG9890 2008-04-29 Release 5.5 accounting
CG9890 2008-08-15 Release 5.9 accounting
CG9890 2008-12-18 5.12 accounting

Clone Sequence Records

LD46465.complete Sequence

1484 bp (1484 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061510

> LD46465.complete
AGAACGTAAACAAATGGAGCACGAGGTGGCTGTTTCAGGAGGGGATTCCT
CGCTGGAGGAGATCACTGGCAGTTCGAAACTCAAGCCCTCCAAGAACACG
GCCATCAAGTGCCTGAAATGCGACAAGGTGTACATATTTCCGTCAGATAA
AGATGACTGCCTGGCGCATTTGTATATGGAGCACCGACTGGTCATCGCCG
ATGTGGAGGATATAGCGCTTCTGGAGGACTACCTCCAGTACTGGGAAAAG
GAGTTTCACACCCACGAATTCGAGCAATATTGCACCACAATGTTCCTGGA
TCAGCTGCCCGATGGCAAGTACGCCAAGAACGAAAAGTACTACCTGCTGT
GTGACATCCTGCCCCAGGACTACGAGCTGCGGCGAAGGTTGAAGGAGAAG
CGCCTAAGTGAAGCCCTGGAGCGACATCAGTTCGAGCTAACCGACCGCAC
CTTCTCCAAGGAGTGCCTTTTCTGCAGGGCCATCATCAAGGGATTGAGGG
CGGACTATCTGGACCATCTGTTTGACAAGCACTTTCTGTTGGTCGGCAAG
CCCGAGAAGCTGGTGTATGTGGACGAACTGCTGGATCACCTGGAGGAGAA
CTTGAATCGGTTAATGTGCCTCTACTGCGAGAAGATCTTCAGGGATCGGC
CCACGCTCAAGGAACACATGCGCAAGAAGGGCCACAAGCGGATCAATCCG
AACCGAAGGGAGTACGACAAGTACTTCCTTATCAACTACAATCGTGTACC
AACGGCCCCCACGCCCCGGAAACAGCACCTCCAAAAGCGAAGACGGGAAA
CGGCATCCGTGTCCACAGTTGCTGATCCTGAAACCGGCAGCGTGGACTTC
GACAAGCACTTCGCTCGCCCTGATTCGGATGGCGAACACGATTCGGACTG
GTCGGATTGGGCGGCAGATGGTGAGCCTAGCTCCATTAAGTGCCTGTTTT
GCCACCATCTCGGCGACAACTTCACCGCCCTCAAGAAGCACATGCACGAG
GTTCATCGCTTGGATTTCGAGAAGGCCACCAGCTCTCTGAACTTCTACCA
ACGCGTCAAGGTGGTCAACTACCTGCGCCGCCAAATGTGCCTGCTGCGCT
GCGTGACCTGCGATCTGCAGTTCGACGAGGAGGAGCTGCTCGTGGAGCAC
ATGGCACAAGAGTCGCACCACGGAATCGGCGATAAGGAGAGCTGGGACAA
GCCCGAGTTCTTCTTCCCGTACATCGAGAACGATGGTCTGCTGTGTGTGC
TGGATGATTCCGGAGGCGATGACCCGGACGTCGATACGGTGCGCATCATC
TCCGAGGATAGTCTGGCGCAGATCAACAAGGATGCGGAGCGGTTGTCCCT
CGAGAATTTTAAGCTGTTGTAACTGAGATTTTTGTATTGTACAGTTTACG
TTTAAAAGAAACTAAGTAAATAGCAATGGAATTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAA

LD46465.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9890-RA 1622 CG9890-RA 138..1573 1..1436 7180 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18949209..18950384 1436..261 5775 99.4 Minus
chr2R 21145070 chr2R 18950439..18950698 260..1 1300 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23062745..23063920 1436..261 5880 100 Minus
2R 25286936 2R 23063975..23064234 260..1 1300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23063944..23065119 1436..261 5880 100 Minus
2R 25260384 2R 23065174..23065433 260..1 1300 100 Minus
Blast to na_te.dros performed 2019-03-15 13:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 1129..1195 1404..1333 141 70.8 Minus

LD46465.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:28 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18949211..18950384 261..1434 99 <- Minus
chr2R 18950439..18950698 1..260 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:08 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 1..1359 14..1372 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:51:05 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 1..1359 14..1372 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:15:42 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 1..1359 14..1372 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:20:11 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 1..1359 14..1372 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:43:46 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 1..1359 14..1372 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:35:51 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 31..1464 1..1434 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:51:05 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 31..1464 1..1434 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:15:42 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 27..1460 1..1434 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:20:11 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 31..1464 1..1434 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:43:46 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
CG9890-RA 27..1460 1..1434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:28 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23062747..23063920 261..1434 100 <- Minus
2R 23063975..23064234 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:28 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23062747..23063920 261..1434 100 <- Minus
2R 23063975..23064234 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:28 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23062747..23063920 261..1434 100 <- Minus
2R 23063975..23064234 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:15:42 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18950270..18951443 261..1434 100 <- Minus
arm_2R 18951498..18951757 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:56:53 Download gff for LD46465.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23063964..23065137 261..1434 100 <- Minus
2R 23065192..23065451 1..260 100   Minus

LD46465.hyp Sequence

Translation from 0 to 1371

> LD46465.hyp
ERKQMEHEVAVSGGDSSLEEITGSSKLKPSKNTAIKCLKCDKVYIFPSDK
DDCLAHLYMEHRLVIADVEDIALLEDYLQYWEKEFHTHEFEQYCTTMFLD
QLPDGKYAKNEKYYLLCDILPQDYELRRRLKEKRLSEALERHQFELTDRT
FSKECLFCRAIIKGLRADYLDHLFDKHFLLVGKPEKLVYVDELLDHLEEN
LNRLMCLYCEKIFRDRPTLKEHMRKKGHKRINPNRREYDKYFLINYNRVP
TAPTPRKQHLQKRRRETASVSTVADPETGSVDFDKHFARPDSDGEHDSDW
SDWAADGEPSSIKCLFCHHLGDNFTALKKHMHEVHRLDFEKATSSLNFYQ
RVKVVNYLRRQMCLLRCVTCDLQFDEEELLVEHMAQESHHGIGDKESWDK
PEFFFPYIENDGLLCVLDDSGGDDPDVDTVRIISEDSLAQINKDAERLSL
ENFKLL*

LD46465.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9890-PA 452 CG9890-PA 1..452 5..456 2437 100 Plus

LD46465.pep Sequence

Translation from 13 to 1371

> LD46465.pep
MEHEVAVSGGDSSLEEITGSSKLKPSKNTAIKCLKCDKVYIFPSDKDDCL
AHLYMEHRLVIADVEDIALLEDYLQYWEKEFHTHEFEQYCTTMFLDQLPD
GKYAKNEKYYLLCDILPQDYELRRRLKEKRLSEALERHQFELTDRTFSKE
CLFCRAIIKGLRADYLDHLFDKHFLLVGKPEKLVYVDELLDHLEENLNRL
MCLYCEKIFRDRPTLKEHMRKKGHKRINPNRREYDKYFLINYNRVPTAPT
PRKQHLQKRRRETASVSTVADPETGSVDFDKHFARPDSDGEHDSDWSDWA
ADGEPSSIKCLFCHHLGDNFTALKKHMHEVHRLDFEKATSSLNFYQRVKV
VNYLRRQMCLLRCVTCDLQFDEEELLVEHMAQESHHGIGDKESWDKPEFF
FPYIENDGLLCVLDDSGGDDPDVDTVRIISEDSLAQINKDAERLSLENFK
LL*

LD46465.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11305-PA 447 GF11305-PA 1..447 1..451 1953 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20073-PA 451 GG20073-PA 1..451 1..451 2192 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20913-PA 447 GH20913-PA 3..447 2..451 1809 74.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9890-PA 452 CG9890-PA 1..452 1..452 2437 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18348-PA 440 GI18348-PA 13..440 17..451 1814 76.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10852-PA 447 GL10852-PA 1..447 1..451 1902 78.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22104-PA 447 GA22104-PA 1..447 1..451 1908 79 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15588-PA 452 GM15588-PA 1..452 1..452 2300 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25086-PA 452 GD25086-PA 1..452 1..452 2300 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20747-PA 446 GJ20747-PA 25..446 23..451 1854 79.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19602-PA 450 GK19602-PA 3..450 6..451 1804 74.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11611-PA 451 GE11611-PA 1..451 1..451 2262 93.6 Plus