Clone LD46530 Report

Search the DGRC for LD46530

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:465
Well:30
Vector:pOT2
Associated Gene/TranscriptHIP-RA
Protein status:LD46530.pep: gold
Preliminary Size:2050
Sequenced Size:2091

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2947 2001-07-04 Blastp of sequenced clone
CG2947 2008-04-29 Release 5.5 accounting
CG2947 2008-08-15 Release 5.9 accounting
CG2947 2008-12-18 5.12 accounting

Clone Sequence Records

LD46530.complete Sequence

2091 bp (2091 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051998

> LD46530.complete
CAAAAGTGGACGTAAAGCTAAGCAAATATTGCTTATTAATAATATTAATA
TATTAATATATCAGATCTGAAAACATCGAGACAAAACGGAATTCAGAAAT
GGCTTTCACAATGCAAACCGGGGATCTGAAGAAGCTGAAGTACTTCATCG
ACTTTGCGCTTGAGAATCCCACCTTCTTGAACATGCCGCAGCTGCAGTTC
GTCAAAGATTTCGTGGAGAAGTTTGGTGGCACGGTGCCGCCTGGCCAATT
CAACGGTGGCAGCGCCGGAGGCAAGTGCCCATTCGGCGGTGTTGCTGGTG
CCAAGGCCAACGAGCCGGCCAATGCCCCCGAGGATAGCGAGGACGAAAAG
TCCCTCTCCGATCCTGAGTCGGACGTGGAGCTGGACATGGAGGGTGTGAT
CGAGGCGGACAGCGACCCCGCCCAACCCATGGGCAACTACAGCAAGAAGG
CCACCGAAGAGGAGGTGGAGCAGGCGAGCGAGCTGCGCGCCCAGGCGGCC
TCCGCTTACGGCCAGCAGAAGTTCGACGAGGCCATCGCCTTGTACACCAA
GGCCATTGAACTGAGCCCGGGTAATGCCCTTTTCCACGCTAAGCGTGGTC
AGGCCTTCCTCAAGCTGAAGAAGCCGAATGCCTGCATTCGGGACTGCGAC
GTGGCGCTGGAACTCAACTCGGATTTGGCGGCTGGCTACAAGTTCAGGGG
ACGCGCCCGTCGCCTCCTCGGAGATTTTGAGCTGGCTGCCCATGATTTGC
GCCAAGCATGCAAGCTGGACTTTGACGAGGAGACAGACGAGTGGCTAAAG
GAGGTCACTCCGAATGCCAAGAAAATCGAGCAGCATCGCTTGAAGCAGGA
GCGTCGCCAGGCAGAGCGTAAGATCAAGGAACGCCAGCGGGATCAGAGGC
GCGCACGTAAGGAGCAGGAAAAGCACAATGCCAGCTCTGGTGGATCATCT
GGAGAATTTTCCGGTGGGAATCCTGGTAACGGAAATATGTCTGATATACT
GGGCGCCATGTCAGATCCCGAGGTGTCAGCCGCCATTCAGGACATTTTGT
CAAATCCGGGTAACATCACAAAGTACGCGTCGAACCCGAAGATATACAAC
CTTATCAAGAAGATTGTGCCCGGTGGAGATGTGGGTGCTGCCTTTGGCCA
AGCGGGTGAAAAGGCTGGAAAGCCGAGCGAGCCTAAGCCTAAAAAGGACT
CCGCCGACTTCGTCGATGACGGTTTGGACTAAGGTTTAGAAATGGGGCAG
TAGTAAGACTGAAACATGCGTCGATAAAAAGAAGTTAACAACCAATTACA
CGAAATCGAGCGAGATTACAAAACAACAAAGAAAGAGAAAGCAACAGAGT
GCGGTGAAGAAGATGGACTACACGAAAAACAAAAGGGAAAGCGGCTGCCT
TACACATTTTTGCAGCTGAGAAAAAACAAACATTTCCTAAGCTTTAACTT
AACCAACACGTAAAAGAACGGGCGACAATGGAGAAAATTCAAATATTCAA
AATACTACAAGCAGTCAGAAGAATAAGCAACATTTATTTAAATCGAGAAG
AAAGAGATGTTGGAGATGCTGGAGACGCTTCTTCACATATTATTGAAAAG
CATACTTGCGGCCATTAAAGTGGCAAATGAAACTATACAAAGGAGCTAGA
ATATGCTTAAAAACTTATCACATTTGCAGTTCACAGGTAAATCAAAAGAT
TGTCCTGTGACGAACAAAACATAAATGTTTAGACGTCAAGTCAGATTCAA
GGGTGCCGATCGATCTAGTTGAACTAAAGCTCGAGAAACAACCAAAAGAA
AATAAAAAATATATATATGTTCAATAATATTAGCCTAAATTACCGAGAAC
GAAGAAACGGATAAAACTAATCGCATCATTTGGTCAAACAAAATTGTACT
GAGTAGGATTTAAATCATATTGTAAGCAAATGCATTTAGCCCCCCAACAT
GAAAGCAATCGCCCATTCATTCACACACTCATTCACACACTCATTCAACC
AGTGATCAATGGAAATAAATAAACGAATCAACAAGAACCCGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD46530.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2947-RB 2139 CG2947-RB 98..2139 1..2042 10210 100 Plus
CG32789-RA 2096 CG32789-RA 61..1996 60..1997 9485 99.3 Plus
CG32789.a 2473 CG32789.a 61..1996 60..1997 9485 99.3 Plus
CG32789-RA 2096 CG32789-RA 1978..2054 1967..2043 385 100 Plus
CG32789.a 2473 CG32789.a 1978..2054 1967..2043 385 100 Plus
CG32789-RA 2096 CG32789-RA 24..55 1..32 160 100 Plus
CG32789.a 2473 CG32789.a 24..55 1..32 160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3684871..3685873 1039..2041 5015 100 Plus
chrX 22417052 chrX 3693954..3694966 1039..2041 4660 97.7 Plus
chrX 22417052 chrX 3684151..3684799 393..1041 3245 100 Plus
chrX 22417052 chrX 3693234..3693882 393..1041 3245 100 Plus
chrX 22417052 chrX 3683462..3683732 1..271 1355 100 Plus
chrX 22417052 chrX 3692604..3692815 60..271 1045 99.5 Plus
chrU 10048995 chrU 6014921..6015132 271..60 1045 99.5 Minus
chrX 22417052 chrX 3683812..3683937 271..396 630 100 Plus
chrX 22417052 chrX 3692895..3693020 271..396 630 100 Plus
chrU 10048995 chrU 6014716..6014841 396..271 630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
CR42197-RA 406 CR42197-RA 30..366 60..396 1670 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3791475..3792479 1039..2043 5025 100 Plus
X 23542271 X 3800558..3801572 1039..2043 4670 97.7 Plus
X 23542271 X 3790755..3791403 393..1041 3245 100 Plus
X 23542271 X 3799838..3800486 393..1041 3245 100 Plus
X 23542271 X 3790066..3790336 1..271 1355 100 Plus
X 23542271 X 3799208..3799419 60..271 1045 99.5 Plus
X 23542271 X 3799499..3799624 271..396 630 100 Plus
X 23542271 X 3790416..3790541 271..396 630 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3799573..3800577 1039..2043 5025 100 Plus
X 23527363 X 3808656..3809612 1039..1997 4605 98.8 Plus
X 23527363 X 3807936..3808584 393..1041 3245 100 Plus
X 23527363 X 3798853..3799501 393..1041 3245 100 Plus
X 23527363 X 3798164..3798434 1..271 1355 100 Plus
X 23527363 X 3807306..3807517 60..271 1045 99.5 Plus
X 23527363 X 3807597..3807722 271..396 630 100 Plus
X 23527363 X 3798514..3798639 271..396 630 100 Plus
X 23527363 X 3809594..3809670 1967..2043 385 100 Plus
X 23527363 X 3807269..3807300 1..32 160 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:53:31 has no hits.

LD46530.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:32 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3683813..3683934 272..393 100 -> Plus
chrX 3684152..3684798 394..1040 100 -> Plus
chrX 3684873..3685873 1041..2041 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:14 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 1..1134 99..1232 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:20 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RB 1..1134 99..1232 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:15:48 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 1..1134 99..1232 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:45 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 1..1134 99..1232 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:43:53 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 1..1134 99..1232 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:43:05 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
CR42197-RA 30..366 60..396 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:09:02 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 30..2070 1..2041 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:20 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RB 30..2070 1..2041 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:15:48 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RB 25..2065 1..2041 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:45 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 30..2070 1..2041 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:43:53 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RB 25..2065 1..2041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:32 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
X 3790066..3790336 1..271 100 -> Plus
X 3790417..3790538 272..393 100 -> Plus
X 3790756..3791402 394..1040 100 -> Plus
X 3791477..3792477 1041..2041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:32 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
X 3790066..3790336 1..271 100 -> Plus
X 3790417..3790538 272..393 100 -> Plus
X 3790756..3791402 394..1040 100 -> Plus
X 3791477..3792477 1041..2041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:32 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
X 3790066..3790336 1..271 100 -> Plus
X 3790417..3790538 272..393 100 -> Plus
X 3790756..3791402 394..1040 100 -> Plus
X 3791477..3792477 1041..2041 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:15:48 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3684099..3684369 1..271 100 -> Plus
arm_X 3684450..3684571 272..393 100 -> Plus
arm_X 3684789..3685435 394..1040 100 -> Plus
arm_X 3685510..3686510 1041..2041 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:38 Download gff for LD46530.complete
Subject Subject Range Query Range Percent Splice Strand
X 3798515..3798636 272..393 100 -> Plus
X 3798164..3798434 1..271 100 -> Plus
X 3798854..3799500 394..1040 100 -> Plus
X 3799575..3800575 1041..2041 100   Plus

LD46530.hyp Sequence

Translation from 98 to 1231

> LD46530.hyp
MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQ
FNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGV
IEADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYT
KAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFR
GRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPNAKKIEQHRLKQ
ERRQAERKIKERQRDQRRARKEQEKHNASSGGSSGEFSGGNPGNGNMSDI
LGAMSDPEVSAAIQDILSNPGNITKYASNPKIYNLIKKIVPGGDVGAAFG
QAGEKAGKPSEPKPKKDSADFVDDGLD*

LD46530.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-PD 377 CG2947-PD 1..377 1..377 1955 100 Plus
HIP-R-PB 377 CG2947-PB 1..377 1..377 1955 100 Plus
HIP-R-PA 377 CG2947-PA 1..377 1..377 1955 100 Plus
HIP-PA 377 CG32789-PA 1..377 1..377 1955 100 Plus

LD46530.pep Sequence

Translation from 98 to 1231

> LD46530.pep
MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQ
FNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGV
IEADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYT
KAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFR
GRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPNAKKIEQHRLKQ
ERRQAERKIKERQRDQRRARKEQEKHNASSGGSSGEFSGGNPGNGNMSDI
LGAMSDPEVSAAIQDILSNPGNITKYASNPKIYNLIKKIVPGGDVGAAFG
QAGEKAGKPSEPKPKKDSADFVDDGLD*

LD46530.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19147-PA 386 GF19147-PA 1..386 1..377 1249 73.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18670-PA 388 GG18670-PA 1..388 1..377 1514 80.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24750-PA 394 GH24750-PA 1..394 1..377 1164 62.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-PD 377 CG2947-PD 1..377 1..377 1955 100 Plus
HIP-R-PB 377 CG2947-PB 1..377 1..377 1955 100 Plus
HIP-R-PA 377 CG2947-PA 1..377 1..377 1955 100 Plus
HIP-PA 377 CG32789-PA 1..377 1..377 1955 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14722-PA 411 GI14722-PA 1..411 1..377 1218 63.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16565-PA 425 GL16565-PA 1..425 1..377 1192 60.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15538-PA 427 GA15538-PA 1..427 1..377 1199 59.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12305-PA 377 GM12305-PA 1..377 1..377 1852 95.2 Plus
Dsec\GM18717-PA 270 GM18717-PA 1..270 1..270 1376 95.9 Plus
Dsec\GM18718-PA 101 GM18718-PA 11..101 287..377 425 92.3 Plus
Dsec\GM18427-PA 289 GM18427-PA 16..111 128..223 147 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16651-PA 377 GD16651-PA 1..377 1..377 1796 93.1 Plus
Dsim\CHIP-PA 289 GD23704-PA 16..111 128..223 147 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19436-PA 424 GJ19436-PA 1..424 1..377 1223 61 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10216-PA 394 GK10216-PA 1..394 1..377 1223 65.6 Plus
Dwil\GK15258-PA 289 GK15258-PA 16..108 128..220 148 33.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16311-PA 387 GE16311-PA 1..387 1..377 1476 79.6 Plus