Clone LD46533 Report

Search the DGRC for LD46533

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:465
Well:33
Vector:pOT2
Associated Gene/TranscriptCG6453-RA
Protein status:LD46533.pep: gold
Preliminary Size:2124
Sequenced Size:2031

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6453 2001-01-01 Release 2 assignment
CG6453 2001-09-19 Blastp of sequenced clone
CG6453 2003-01-01 Sim4 clustering to Release 3
CG6453 2008-04-29 Release 5.5 accounting
CG6453 2008-08-15 Release 5.9 accounting
CG6453 2008-12-18 5.12 accounting

Clone Sequence Records

LD46533.complete Sequence

2031 bp (2031 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058725

> LD46533.complete
CCGGCATTTTACGATTCGTAAAAAACCATAGCAAATTCCACGTAAGATTT
ACAGCACTCGGGAGGCAACTCAAATTAGAAGATTAATTAGGAGTAGTACT
GAGCACAGCCAAAATGCAAAGCTTGCAACTTAGCCAAGTGCTGCTAATAC
CGCTCCTGCTGGCCCTGGTGGCCACCAACGTAGGCTCTGCCAGCGAAGTT
CCACGTCCGCTGGGTGTTCCGCTGGCCAAGGCTTCACTGTACCAACCTCG
GGCGGGCGAAAACAGTTGGACCTGCTTGGATGGCAGCCGCACCATACCCT
TCTCCCACATCAACGACGATTACTGCGACTGTGCGGATGGAAGCGATGAA
CCTGGCACTGCGGCCTGTCCGCAGGGCCAGTTCCATTGTGTGAACAAAGG
CCACCAGCCGGTAAATATACCCAGTTCGCAGGTGCAGGACGGCATCTGTG
ACTGCTGCGATGGCAGTGACGAGTCAGAGACGGTCGGTTGCCCGAATACC
TGCTTGGAACTCGGAGCAGCGGCGGCTGTCCAAAGGCGGAATGCAGCGGA
GCTGCACAAACGTGGAGCTGAGCGGCGACAGGAGATGATTACCCGTGGCA
AGCAGATGAGGGCCGAGCGAGAGGCGCGCCGCCTTGAGCTAGATCAACGA
CGCAAGGAACAGGAACTGCTGCGCGCCGAAAAGGAGCAGCTCAAGCAAAC
CGCTGAGGCTCTAGAGGCAGAAGCCATTGAAATCTTTAAGGAGCAACAGC
GCGAGGTGGATGCTGACACCGCACAGGCGGAGCGGGAGCCGCAACAGATG
CGCCAAGAGGCCACGCTCACCTTTGTGCGCTACGACACCAACAAAGATGG
CTTCGTCGAAGTTACCGAACTGATGGTCGACATGAATCTGGACAGAGATC
GCAACGGCGTGGTAACTGTGGAGGAGGCCAAGTACTTCCTGGACGAGCGC
GAACGAGTGGATCTAGATGCTTTCGTAACGCTGGCCTGGCCGCGTATTAA
GTCTCTGCAAATGCTGGCCGAGGGTCTGTTCCAGCCGCCGCAGCCGGAGG
AAGTTGCCCAGCAGCCAGAGGTCACCACCGAGTCGATCCAGCCCACTCCA
CCAAAGCTAAGCGAAGAACAAGCTGAACTCGCCGGCGATGATGATATTGA
AGCCGACGAAGAGGGTGAGGAGGATCAGTACGATGATGAGGAACCCGATG
TGGGCGTTGGCGAAGCCTCTCCGGATGCGGAAGAAGCCACGCCACCTAAC
TACGATCCGGAGACGCAGCGTTTGATCCAGCAGGCCAATGAGGCGCGAAA
TGCTCTCGAGGAAGTGGAGCGCAGCCTGCGCGAGATTCAGCAGGAGGTTA
ACGAGATCGACGACCAGAACAACAAGGGCTACGGCCTGACCGAGGAGTGG
GCCGTGCACGATGGCCAGTGCTACAATTTCGAAGATCGGGAGTATGTGTA
CACCCTTTGTCCCTTCGATCGGGCCTCCCAGAAGTCGAGGAGCGGTGGGC
CTGAAACCACGCTGGGTCGCTGGGACAAATGGAGTGGAGAGCCAAAGCAA
TATTCCCAACAAAAGTACACCAATGGTGCTGCCTGCTGGAATGGTCCAAA
CCGTTCGGCCATCATCAACATTAGTTGTGCCCTGGAACCCAAAATCACTG
CCGTCAGCGAGCCCAATCGCTGTGAATACTACTTTGAATTCGAAACTCCC
GCCGCCTGCGACAGCGAAGCTTTCCAGTCCGAATCGGAGAATCTGCACGA
CGAACTCTGAAATGTTCAACAATCGACGATGAGGATGAGCCGCAGAGAAA
TGTGAATGCTTGGCATGCGTAGACCAGAGATTTGGGGATTGTATTTTAGT
TTTAAAGGAGAATATCAATTTTGTCGAGATCATTCCCAAACTGCAGCAGG
AAAACCATCAAGAATTGTAGCTAATTAACTCAGTATATGCATTTAAGCAA
AAAGTACATCAAGTTTCATTCTGAATAAAGTGTAAACACCTAGTATTTTT
AAAACAGATAAAAAAAAAAAAAAAAAAAAAA

LD46533.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6453-RA 2488 CG6453-RA 214..2224 1..2011 10055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17481763..17482878 1116..1 5580 100 Minus
chr2L 23010047 chr2L 17480805..17481699 2009..1115 4475 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17483156..17484271 1116..1 5580 100 Minus
2L 23513712 2L 17482196..17483092 2011..1115 4485 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17483156..17484271 1116..1 5580 100 Minus
2L 23513712 2L 17482196..17483092 2011..1115 4485 100 Minus
Blast to na_te.dros performed 2019-03-16 12:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 278..388 1979..1869 141 58.6 Minus

LD46533.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:11:31 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17480805..17481697 1117..2009 100 <- Minus
chr2L 17481763..17482878 1..1116 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:15 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 1..1647 114..1760 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:48 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 1..1647 114..1760 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:57:37 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 1..1647 114..1760 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:04 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 1..1647 114..1760 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:26 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 1..1647 114..1760 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:43 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 32..2040 1..2009 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:48 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 32..2040 1..2009 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:57:37 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 37..2045 1..2009 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:04 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 32..2040 1..2009 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:26 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6453-RA 37..2045 1..2009 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:31 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17482198..17483090 1117..2009 100 <- Minus
2L 17483156..17484271 1..1116 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:31 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17482198..17483090 1117..2009 100 <- Minus
2L 17483156..17484271 1..1116 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:31 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17482198..17483090 1117..2009 100 <- Minus
2L 17483156..17484271 1..1116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:57:37 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17482198..17483090 1117..2009 100 <- Minus
arm_2L 17483156..17484271 1..1116 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:27 Download gff for LD46533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17482198..17483090 1117..2009 100 <- Minus
2L 17483156..17484271 1..1116 100   Minus

LD46533.pep Sequence

Translation from 113 to 1759

> LD46533.pep
MQSLQLSQVLLIPLLLALVATNVGSASEVPRPLGVPLAKASLYQPRAGEN
SWTCLDGSRTIPFSHINDDYCDCADGSDEPGTAACPQGQFHCVNKGHQPV
NIPSSQVQDGICDCCDGSDESETVGCPNTCLELGAAAAVQRRNAAELHKR
GAERRQEMITRGKQMRAEREARRLELDQRRKEQELLRAEKEQLKQTAEAL
EAEAIEIFKEQQREVDADTAQAEREPQQMRQEATLTFVRYDTNKDGFVEV
TELMVDMNLDRDRNGVVTVEEAKYFLDERERVDLDAFVTLAWPRIKSLQM
LAEGLFQPPQPEEVAQQPEVTTESIQPTPPKLSEEQAELAGDDDIEADEE
GEEDQYDDEEPDVGVGEASPDAEEATPPNYDPETQRLIQQANEARNALEE
VERSLREIQQEVNEIDDQNNKGYGLTEEWAVHDGQCYNFEDREYVYTLCP
FDRASQKSRSGGPETTLGRWDKWSGEPKQYSQQKYTNGAACWNGPNRSAI
INISCALEPKITAVSEPNRCEYYFEFETPAACDSEAFQSESENLHDEL*

LD46533.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15099-PA 553 GF15099-PA 1..553 1..548 2327 78.2 Plus
Dana\GF16904-PA 213 GF16904-PA 109..212 34..130 244 50.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21740-PA 548 GG21740-PA 1..548 1..548 2688 92.9 Plus
Dere\GG22902-PA 213 GG22902-PA 109..212 34..130 244 49.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10155-PA 549 GH10155-PA 4..549 5..548 1875 66.5 Plus
Dgri\GH18343-PA 208 GH18343-PA 96..207 26..130 232 45.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
GCS2beta-PB 548 CG6453-PB 1..548 1..548 2887 100 Plus
GCS2beta-PA 548 CG6453-PA 1..548 1..548 2887 100 Plus
CG7685-PB 207 CG7685-PB 103..206 34..130 250 48.6 Plus
CG7685-PA 213 CG7685-PA 109..212 34..130 250 48.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22410-PA 545 GI22410-PA 25..545 28..548 1913 71.7 Plus
Dmoj\GI23324-PA 207 GI23324-PA 87..206 16..130 245 46.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15951-PA 551 GL15951-PA 26..551 26..548 2135 74.8 Plus
Dper\GL24345-PA 215 GL24345-PA 111..214 34..130 222 47.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19606-PA 551 GA19606-PA 26..551 26..548 2139 75 Plus
Dpse\GA20519-PA 215 GA20519-PA 111..214 34..130 222 47.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17123-PA 548 GM17123-PA 1..548 1..548 2767 96.2 Plus
Dsec\GM17869-PA 191 GM17869-PA 87..190 34..130 236 48.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21864-PA 391 GD21864-PA 1..391 158..548 2013 96.9 Plus
Dsim\GD19231-PA 213 GD19231-PA 109..212 34..130 241 48.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20305-PA 531 GJ20305-PA 5..531 27..548 1965 73.1 Plus
Dvir\GJ10327-PA 205 GJ10327-PA 83..204 14..130 256 48 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24827-PA 552 GK24827-PA 2..552 4..548 2006 72.7 Plus
Dwil\GK13088-PA 210 GK13088-PA 99..209 25..130 240 48.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13129-PA 548 GE13129-PA 1..548 1..548 2671 95.1 Plus
Dyak\GE25540-PA 213 GE25540-PA 109..212 34..130 242 49.5 Plus

LD46533.hyp Sequence

Translation from 113 to 1759

> LD46533.hyp
MQSLQLSQVLLIPLLLALVATNVGSASEVPRPLGVPLAKASLYQPRAGEN
SWTCLDGSRTIPFSHINDDYCDCADGSDEPGTAACPQGQFHCVNKGHQPV
NIPSSQVQDGICDCCDGSDESETVGCPNTCLELGAAAAVQRRNAAELHKR
GAERRQEMITRGKQMRAEREARRLELDQRRKEQELLRAEKEQLKQTAEAL
EAEAIEIFKEQQREVDADTAQAEREPQQMRQEATLTFVRYDTNKDGFVEV
TELMVDMNLDRDRNGVVTVEEAKYFLDERERVDLDAFVTLAWPRIKSLQM
LAEGLFQPPQPEEVAQQPEVTTESIQPTPPKLSEEQAELAGDDDIEADEE
GEEDQYDDEEPDVGVGEASPDAEEATPPNYDPETQRLIQQANEARNALEE
VERSLREIQQEVNEIDDQNNKGYGLTEEWAVHDGQCYNFEDREYVYTLCP
FDRASQKSRSGGPETTLGRWDKWSGEPKQYSQQKYTNGAACWNGPNRSAI
INISCALEPKITAVSEPNRCEYYFEFETPAACDSEAFQSESENLHDEL*

LD46533.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6453-PB 548 CG6453-PB 1..548 1..548 2887 100 Plus
CG6453-PA 548 CG6453-PA 1..548 1..548 2887 100 Plus
CG7685-PB 207 CG7685-PB 103..206 34..130 250 48.6 Plus
CG7685-PA 213 CG7685-PA 109..212 34..130 250 48.6 Plus