Clone LD46538 Report

Search the DGRC for LD46538

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:465
Well:38
Vector:pOT2
Associated Gene/TranscriptNaa60-RA
Protein status:LD46538.pep: gold
Preliminary Size:2407
Sequenced Size:2278

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18177 2001-01-01 Release 2 assignment
CG18177 2001-07-04 Blastp of sequenced clone
CG18177 2003-01-01 Sim4 clustering to Release 3
CG18177 2008-04-29 Release 5.5 accounting
CG18177 2008-08-15 Release 5.9 accounting
CG18177 2008-12-18 5.12 accounting

Clone Sequence Records

LD46538.complete Sequence

2278 bp (2278 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060437

> LD46538.complete
TACTGCTGATTTGTTTTCATTAATTCTTTTTGGCTTGGCGAATAAATTAG
GACAAATGAGGCATCATCGCGGGCCAACTGAATTGTGACCAGCGGGCAGC
AGCAGCGGCATGCGACACCGACACCATCAGCGCATCAGCACCACCTGGCC
AGCGTTGTAAGGGATTCTCCCACCCTCCCCAAAGAGCCAACGATTCCACT
TGAGACCCAAAAGTCCCAGTTTAAAACCAAAATCAAAATCAGCGGAGCAC
CCGCACACCAGCGAGAGCAAGTGGTTTCTACATGATCCGGCGACACGCTG
CCCCCCTCTCCGTGCTGCATGCTCCATGCTCCAGCTCAATGTAAATGTTA
ATTAAAGCCAATTGAGCGCACACCCAAAAACACGCACCAAACTGAAAACG
AATACGAATACGAATCACTCACCCGGAGGAGAAGGCTCCGTTGGACAAGA
TTTCGCGCTTAACCTGTACAGGCGACAACGGCGGTGGCGGTGGTGCTGCA
ATAAATGGACATAATTGCTCTAATTGGACAGAGCAGCAGCAGACGCAGTG
GCAGTGGCAGTGGGAACGGAGGAGCACCAGCACCAGCACCATCAGCAGCA
GCAGCACCCCCCCTTGCAATAGGATGGCACAATTCACACTCTACAACAAA
CACAGTGCGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGT
ACCGCTGTGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACG
ATCTGACGGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTAT
CCACTATCATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCT
GGCAGCTGTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCA
AACCCTATCGAAATGTGAACAAGGAGGTAATAGCCAATATGAGTGATAGT
GATGAGTTGTACACCAGGCTGAGCGGTTTTCCCATGCAGGACAAGGGCAT
CCTGCCGGACTCGATGGGTCGTTCCGCCGATGTCGGTTATATACTGTCGC
TGGGCGTCCATCGTTCGCATCGACGCAATGGCATCGGATCGCTGCTGTTG
GACGCGCTAATGAACCACCTGACGACGGCCGAGCGGCATTCGGTGAAGGC
GATCTTCCTGCACACGCTGACCACCAATCAACCTGCCATATTTTTCTACG
AGAAGAGAAGATTTACGCTTCACTCATTCCTGCCCTACTACTACAATATA
CGGGGCAAGGGCAAGGACGGATTCACCTATGTGAACTACATTAACGGCGG
CCATCCACCCTGGACTTTATTAGATCACATCAAGCACTACGCGTCGATGG
TGCGCCACACCAGCAGCCTTTGCGCCTGGCTGGCCGGACGAGTCCAGCAG
GTGGTGCGGTGGTTCTACCACAAGCTGCTCACTCGCTTCAACTTTATCGA
GTGAATCTCGACGGCGCAGCACAAGCACTGGCCAGGCATATACACGCATC
CTTCCTAGACACACGAGCACTTTGAGGGCGATGATGAGTGTGTCCGCCGC
ATTATGTCATCCCGTCGAGCATAAACAGAAACAGAAACACAAACAAACAC
AAACATTTATATGTACTATGGCACCCAATCACCACCACAGACAGACACAC
CTTCATTATAAATGTTAGGCAACACCTCCGCAGAATCATTACGTTTTTAT
ACGGAAGCTAATAGAGAAGATGTGAGACGAGAAGGAGAAGGAGAAGAAGA
TCTAGCAAAGAACAACATCAAAGGCATAAGTTGAAAGTTGTAACATAGTT
CGCTAAGTGTATTATTACGTTTTAAAAGATATCTATCTGTTCACTACTGC
TGTAAATAGTCTTATGATGTTTTGTTTGAATCGAGCTGTAACCGAGTGAT
TTGGAATTAGCATAGCCCCCTTATCTTTTGAATGTAGCCCGTGTGTATGT
TTTTCCTAAGTTTTAAGTTCCACGCACAAGACAGTCATTTAGTTTAGCGA
AGACAAACAACAAAGATGCTCATGCTTTAATGCTTAATTTATGAAATCTG
CACGTAAATAGCTTTGAACTGAGAATGGCAAGAATATCTATCCAGTTGAA
TACCCGAACCAACCATTTAAATTCAAATCCCGTTCGCTGTTTCTATAGTA
TTTTGTAAAAGTATTTTAATGCATATTGTTTCGCAGCTAAATCTGATTAC
TTTAGGCACAATTTATCTAGCAAATTGTAATATTTTTTAAAATAAAAACT
TGTAAAGTTAAAAAAAAAAAAAAAAAAA

LD46538.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18177-RA 2285 CG18177-RA 27..2285 1..2259 11295 100 Plus
CG18177-RB 2222 CG18177-RB 951..2222 988..2259 6360 100 Plus
CG18177-RB 2222 CG18177-RB 27..953 1..927 4635 100 Plus
CG18177.a 1424 CG18177.a 27..788 1..762 3810 100 Plus
CG18177.a 1424 CG18177.a 786..1424 988..1626 3195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9720567..9721504 1322..2259 4690 100 Plus
chr3L 24539361 chr3L 9718784..9719423 1..640 3155 99.5 Plus
chr3L 24539361 chr3L 9719837..9720287 760..1210 2255 100 Plus
chr3L 24539361 chr3L 9719641..9719764 641..764 620 100 Plus
chr3L 24539361 chr3L 9720356..9720473 1209..1326 575 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9728713..9729651 1322..2260 4695 100 Plus
3L 28110227 3L 9726930..9727569 1..640 3200 100 Plus
3L 28110227 3L 9727983..9728433 760..1210 2255 100 Plus
3L 28110227 3L 9727787..9727909 641..763 615 100 Plus
3L 28110227 3L 9728502..9728619 1209..1326 575 99.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9721813..9722751 1322..2260 4695 100 Plus
3L 28103327 3L 9720030..9720669 1..640 3200 100 Plus
3L 28103327 3L 9721083..9721533 760..1210 2255 100 Plus
3L 28103327 3L 9720887..9721009 641..763 615 100 Plus
3L 28103327 3L 9721602..9721719 1209..1326 575 99.1 Plus
Blast to na_te.dros performed on 2019-03-15 22:32:28 has no hits.

LD46538.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:33:30 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9718784..9719314 1..531 99 == Plus
chr3L 9719390..9719423 607..640 100 -> Plus
chr3L 9719641..9719761 641..761 100 -> Plus
chr3L 9719839..9720287 762..1210 100 -> Plus
chr3L 9720358..9720470 1211..1323 99 -> Plus
chr3L 9720569..9721471 1324..2226 96 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:16 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RA 1..831 624..1454 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:21 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RA 1..831 624..1454 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:59 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 1..831 624..1454 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:46 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RA 1..831 624..1454 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:57 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 1..831 624..1454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:09:04 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RA 1..2259 1..2259 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:21 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RA 27..2285 1..2259 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:59 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 36..2294 1..2259 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:47 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RA 1..2259 1..2259 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:57 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 36..2294 1..2259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:30 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9726930..9727569 1..640 100 -> Plus
3L 9727787..9727907 641..761 100 -> Plus
3L 9727985..9728433 762..1210 100 -> Plus
3L 9728504..9728616 1211..1323 99 -> Plus
3L 9728715..9729650 1324..2259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:30 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9726930..9727569 1..640 100 -> Plus
3L 9727787..9727907 641..761 100 -> Plus
3L 9727985..9728433 762..1210 100 -> Plus
3L 9728504..9728616 1211..1323 99 -> Plus
3L 9728715..9729650 1324..2259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:30 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9726930..9727569 1..640 100 -> Plus
3L 9727787..9727907 641..761 100 -> Plus
3L 9727985..9728433 762..1210 100 -> Plus
3L 9728504..9728616 1211..1323 99 -> Plus
3L 9728715..9729650 1324..2259 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:59 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9720030..9720669 1..640 100 -> Plus
arm_3L 9720887..9721007 641..761 100 -> Plus
arm_3L 9721085..9721533 762..1210 100 -> Plus
arm_3L 9721604..9721716 1211..1323 99 -> Plus
arm_3L 9721815..9722750 1324..2259 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:40 Download gff for LD46538.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9720030..9720669 1..640 100 -> Plus
3L 9720887..9721007 641..761 100 -> Plus
3L 9721085..9721533 762..1210 100 -> Plus
3L 9721604..9721716 1211..1323 99 -> Plus
3L 9721815..9722750 1324..2259 100   Plus

LD46538.pep Sequence

Translation from 623 to 1453

> LD46538.pep
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EVIANMSDSDELYTRLSGFPMQDKGILPDSMGRSADVGYILSLGVHRSHR
RNGIGSLLLDALMNHLTTAERHSVKAIFLHTLTTNQPAIFFYEKRRFTLH
SFLPYYYNIRGKGKDGFTYVNYINGGHPPWTLLDHIKHYASMVRHTSSLC
AWLAGRVQQVVRWFYHKLLTRFNFIE*

LD46538.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24673-PA 254 GF24673-PA 1..254 1..276 1308 89.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15408-PA 255 GG15408-PA 1..255 1..276 1327 90.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15428-PA 258 GH15428-PA 1..258 1..276 1225 83.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-PA 276 CG18177-PA 1..276 1..276 1476 100 Plus
Naa60-PB 255 CG18177-PB 1..255 1..276 1338 92.4 Plus
Naa60-PC 239 CG18177-PC 1..218 1..239 1102 89.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13029-PA 258 GI13029-PA 1..258 1..276 1233 83.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16291-PA 255 GL16291-PA 1..255 1..276 1286 87 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23434-PA 255 GA23434-PA 1..255 1..276 1286 87 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25182-PA 255 GM25182-PA 1..255 1..276 1337 91.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14213-PA 456 GD14213-PA 1..234 1..255 1223 91.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12125-PA 258 GJ12125-PA 1..258 1..276 1217 83.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11823-PA 256 GK11823-PA 1..256 1..276 1258 85.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20874-PA 255 GE20874-PA 1..255 1..276 1334 91.3 Plus

LD46538.hyp Sequence

Translation from 623 to 1453

> LD46538.hyp
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EVIANMSDSDELYTRLSGFPMQDKGILPDSMGRSADVGYILSLGVHRSHR
RNGIGSLLLDALMNHLTTAERHSVKAIFLHTLTTNQPAIFFYEKRRFTLH
SFLPYYYNIRGKGKDGFTYVNYINGGHPPWTLLYHIKHYASMVRHTSSLC
AWLAGRVQQVVRWFYHKLLTRFNFIE*

LD46538.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-PA 276 CG18177-PA 1..276 1..276 1467 99.6 Plus
Naa60-PB 255 CG18177-PB 1..255 1..276 1329 92 Plus
Naa60-PC 239 CG18177-PC 1..218 1..239 1112 89.5 Plus