Clone LD46555 Report

Search the DGRC for LD46555

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:465
Well:55
Vector:pOT2
Associated Gene/TranscriptTango6-RA
Protein status:LD46555.pep: gold
Sequenced Size:2858

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18398 2003-01-01 Sim4 clustering to Release 3
CG18398 2004-10-04 Blastp of sequenced clone
Tango6 2008-04-29 Release 5.5 accounting
Tango6 2008-08-15 Release 5.9 accounting
Tango6 2008-12-18 5.12 accounting

Clone Sequence Records

LD46555.complete Sequence

2858 bp (2858 high quality bases) assembled on 2004-10-04

GenBank Submission: BT016081

> LD46555.complete
AGCATCTCTAGCAAATGGTCGCTAAATTCGCAAAATTGTAGTTTGCTGGG
ATAACAATGATAAATACGGCCAAGTACTTTGCTCTTCTAGAGAGTTTAAG
GTTTAGTAAAGCTCTAGCAAATACGGCGAATAACTCAGGGACTGCCGAAG
CCTTGGAAATCAACCTGCGAATTTTGGAAAAATATGCTAAACTCGAGATT
GGTCAGCAATTGCATGAGCTGTGCCTGGAATATCAGTTAACAGACGATCA
CGAATCTAGTATTGATCCCGATTCGGATCGTACTATATGCTATATAATAA
GATTGCAACATGTGCTACATTCGATCATGAGGAACATTAATTTCCACAGC
GACGCCAAGGAGGATCTTATTTCGGTAGCGCACCTGAAATTGTGTATCCA
GGCTTCCCAAGAATTATCATATTACTCGCTTCGATGCCAGCTACATGAGG
ATTTCTACAAGTCGCCCATCTTTTGTGAGGCTCAGGGGAAAATCAAAGCT
AACTTTTCATTGATGCTTCTAAGCATTCAGTTCTTTATTAATCTACTGCA
TATTCGACAATACCACATAGCCAACTCGATGGAGCTGGTGCAAAGGGATC
TACTGGCGGCCATTGTGAGTCTACGTGTGCAGCAAGACTCTCCACTGCTG
GATAAGGCTATAGCCTACCTCTGGCAATATGAATCCAAAGCAGATTTCTT
TCGCAACATCTTGCTTTTTAAAGCTACGACTCTCTGCCCAACTCTGGCCC
AATTATTGCACCGTCAACTCTTAGGAAAGCTTCACTTACCCCAAGGATTT
GCTAGTCTTGTTGAGGCCCTGCATCAAAATCCCAATGTGAATTCTTCCAG
AAATGCGGAAATTGTGGCTAGTATTGTGGCCAGAAAAGGATTTTCTCAGT
TAGCGCAAGAGAAGATGGTTCTCCAGGTGCTAGAATATTGTAAGTTCTAT
CTGCAGAATGCGGACAAAATGTGCGCCGGTGTCCTATCGCTCAGAAGACT
TTACGATTTAAGTGATACAAATCAAAAGCTGATAAAAGAAATATTATTCA
AACACTGGGAAACGCTTTGTAACCCAGAAGACATTATTAATGGCCTTATC
TTAATGGATCACCAGGAACTGTGCAATCGCATTCTCTTATGGCAGCATCT
CTTTTGTTCTTCAACCGTAGCTTGCTTACCCAGTAATCTACTCGTTCCCT
ACCTTCCTTTGCTGCTCCAACTCTACGATGGCCTTCCAATGGAATTACCG
GCGTCATCGCAGATTTCTGCCATTATTTTGCGTTGTCTGGACAACAGAGA
AATGAAAAACGAATTACCTGCGATACTCCAGAAGCTGTTTAAATGGGAAA
TTGAGAAGGAACCTCCTTGGAAGTGTTTAAACCCACGCATTATAATCCTG
CCTTCCATGAACACAACTCAAATTCAGGTTAAAGTAGCTCACAAAGATCA
TCTAGCAGATCACGATATGGGCAGAATATTGCCCGGTCTACTCACATCAA
GCTCTCATCATTCCCTCACCTGCAAAGTTTTCCTCTCTCTTCTGGGCTTC
ATAGCTAAACAGATAAATGATAAATCTTCAGCCAGCGTAGATTTTATTTC
ATCAGAAGCAGAGCTCAAAGACTTTCTGCACTCCAAATATCAACTGAAGC
TAGATTTGCTCATTGCTTTAAACCAAATGGTAGCCCACCAACCATTAAGA
GCTCAGCTATCACAACATACCAAGGAGCTTCTACATATACTAAAAGACTT
GCTTGTCCACCGATCTAGAGAGCAAGATACCACGGATCAGATCCTACTTC
TCGTTCTAAACCTCTTGCAGGAAATTCTTGAGGGCAGTGAGAATATTCAA
CTTTCAGAGGCCTGTAAGGAACTGAAAGAACAATTGCACCTGTTGGGTAC
TCGATCTTCCAACCCTCTTATCCAGCAATCTGTAAAATCATTGCTTACAA
TAATTCACGGCGCATGGCGACCAAGTGAGGCTGTTAAAATACAACCTTTT
CAAAGAGCTCGGTCCTTGATAGAGGAAAAACAATCCCACATGCAAGTGTA
TGGAATTCAGATGATGATTGATTTGCTGAAAAAAAGAGATCCTGCTACCT
TAGCGCAGGGTCAACTTATCATAGCGTTAGCCCTGACCACTCTCAAGGAT
AAGGAATCCTACACCTTCTTAAATTGTGTTCGGCTCTTTGTGTCGCTTGT
TCATGTGATGGAGTCCGATGTGCTGGACAAATTGAGTGATGAGTACCTAT
CAGAGACGGCTCACTTAGACTACCGCCTCGTAGTGGGTGAAGCTATTCTG
AAAGTCGCTCAGGAGTTGGGTCCTCTTTGCTTTCGATACAAGGCTGTTCT
TCTCAACTGCTTCATGTACGGCTCCCGGTCTCCTGTTCACGAATTCCGGA
TGTCAGCCTTTGCCAATCTTGCCCAGCTTTGTCGCCTTTTGGCCTTTCAA
GTGCAGAACTTCTTCCACGAGTTACTCCAACTTGTTAATAGCGAATTAAC
CACCGGAGGATATGTTCCCTCTAAGCGTGCAGCAGTCCTGGTCTTAGCTG
AACTATTAAACGGCATGGAGAACCTTCTGGATTACCAGGAAATGTTACTC
CCCATTTATCGCCTTTTAAAAGCGATTGAAGCGGATGAATCCTGTGATCC
TCAAATGCGTCAGCATGCTGCAAACGGTCTGAAAATTTTAAACAAAAAGT
GCACAAAACTGATACAATCTGCCTTGGAGGAGAAATCATTACAGAAGCAG
ATTAAGGTGTTGGGCATTAAGGACGATGATTCACCTCAAAGAAGAAACCG
ACATATACTGGAACTGAATTAAAGGCTATCTTAGAAACCTAAAAAAAAAA
AAAAAAAA

LD46555.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tango6-RA 2871 Tango6-RA 27..2867 1..2841 14205 100 Plus
CG10639-RA 2067 CG10639-RA 2013..2067 2841..2787 275 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18967905..18970110 116..2321 11030 100 Plus
chr2L 23010047 chr2L 18970168..18970689 2319..2840 2610 100 Plus
chr2L 23010047 chr2L 18967732..18967848 1..117 585 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18969216..18971421 116..2321 11030 100 Plus
2L 23513712 2L 18971479..18972001 2319..2841 2615 100 Plus
2L 23513712 2L 18969043..18969159 1..117 585 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18969216..18971421 116..2321 11030 100 Plus
2L 23513712 2L 18971479..18972001 2319..2841 2615 100 Plus
2L 23513712 2L 18969043..18969159 1..117 585 100 Plus
Blast to na_te.dros performed 2019-03-15 22:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 771..841 1021..1092 132 66.7 Plus

LD46555.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:33:31 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18967907..18970108 118..2319 100 -> Plus
chr2L 18967732..18967848 1..117 100 -> Plus
chr2L 18970169..18970689 2320..2840 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:17 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 1..2766 57..2822 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:11 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 1..2766 57..2822 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:02 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 1..2766 57..2822 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:06 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 1..2766 57..2822 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:59 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 1..2766 57..2822 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:58 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 12..2851 1..2840 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:11 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 12..2851 1..2840 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:02 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 16..2855 1..2840 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:06 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 12..2851 1..2840 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:59 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
Tango6-RA 16..2855 1..2840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:31 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18969043..18969159 1..117 100 -> Plus
2L 18969218..18971419 118..2319 100 -> Plus
2L 18971480..18972000 2320..2840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:31 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18969043..18969159 1..117 100 -> Plus
2L 18969218..18971419 118..2319 100 -> Plus
2L 18971480..18972000 2320..2840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:31 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18969043..18969159 1..117 100 -> Plus
2L 18969218..18971419 118..2319 100 -> Plus
2L 18971480..18972000 2320..2840 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:02 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18969043..18969159 1..117 100 -> Plus
arm_2L 18969218..18971419 118..2319 100 -> Plus
arm_2L 18971480..18972000 2320..2840 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:56 Download gff for LD46555.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18969218..18971419 118..2319 100 -> Plus
2L 18971480..18972000 2320..2840 100   Plus
2L 18969043..18969159 1..117 100 -> Plus

LD46555.pep Sequence

Translation from 56 to 2821

> LD46555.pep
MINTAKYFALLESLRFSKALANTANNSGTAEALEINLRILEKYAKLEIGQ
QLHELCLEYQLTDDHESSIDPDSDRTICYIIRLQHVLHSIMRNINFHSDA
KEDLISVAHLKLCIQASQELSYYSLRCQLHEDFYKSPIFCEAQGKIKANF
SLMLLSIQFFINLLHIRQYHIANSMELVQRDLLAAIVSLRVQQDSPLLDK
AIAYLWQYESKADFFRNILLFKATTLCPTLAQLLHRQLLGKLHLPQGFAS
LVEALHQNPNVNSSRNAEIVASIVARKGFSQLAQEKMVLQVLEYCKFYLQ
NADKMCAGVLSLRRLYDLSDTNQKLIKEILFKHWETLCNPEDIINGLILM
DHQELCNRILLWQHLFCSSTVACLPSNLLVPYLPLLLQLYDGLPMELPAS
SQISAIILRCLDNREMKNELPAILQKLFKWEIEKEPPWKCLNPRIIILPS
MNTTQIQVKVAHKDHLADHDMGRILPGLLTSSSHHSLTCKVFLSLLGFIA
KQINDKSSASVDFISSEAELKDFLHSKYQLKLDLLIALNQMVAHQPLRAQ
LSQHTKELLHILKDLLVHRSREQDTTDQILLLVLNLLQEILEGSENIQLS
EACKELKEQLHLLGTRSSNPLIQQSVKSLLTIIHGAWRPSEAVKIQPFQR
ARSLIEEKQSHMQVYGIQMMIDLLKKRDPATLAQGQLIIALALTTLKDKE
SYTFLNCVRLFVSLVHVMESDVLDKLSDEYLSETAHLDYRLVVGEAILKV
AQELGPLCFRYKAVLLNCFMYGSRSPVHEFRMSAFANLAQLCRLLAFQVQ
NFFHELLQLVNSELTTGGYVPSKRAAVLVLAELLNGMENLLDYQEMLLPI
YRLLKAIEADESCDPQMRQHAANGLKILNKKCTKLIQSALEEKSLQKQIK
VLGIKDDDSPQRRNRHILELN*

LD46555.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15258-PA 920 GF15258-PA 1..920 1..921 3516 73.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21140-PA 593 GG21140-PA 261..593 589..921 1603 91.9 Plus
Dere\GG21140-PA 593 GG21140-PA 1..260 1..260 1191 87.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10170-PA 928 GH10170-PA 1..928 1..921 2129 52.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tango6-PA 921 CG18398-PA 1..921 1..921 4678 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14211-PA 923 GI14211-PA 1..923 1..921 2292 54.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18498-PA 1027 GL18498-PA 105..1027 1..921 3290 69.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14919-PA 1060 GA14919-PA 138..1060 1..921 3290 69.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17302-PA 921 GM17302-PA 1..921 1..921 4441 93.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24165-PA 685 GD24165-PA 1..683 153..835 3303 94.7 Plus
Dsim\GD24164-PA 139 GD24164-PA 1..122 1..122 586 93.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20486-PA 920 GJ20486-PA 1..920 1..921 2409 54.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24699-PA 923 GK24699-PA 1..923 1..921 2363 55.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13214-PA 439 GE13214-PA 187..439 669..921 1223 90.9 Plus
Dyak\GE13214-PA 439 GE13214-PA 1..187 1..187 829 85 Plus

LD46555.hyp Sequence

Translation from 56 to 2821

> LD46555.hyp
MINTAKYFALLESLRFSKALANTANNSGTAEALEINLRILEKYAKLEIGQ
QLHELCLEYQLTDDHESSIDPDSDRTICYIIRLQHVLHSIMRNINFHSDA
KEDLISVAHLKLCIQASQELSYYSLRCQLHEDFYKSPIFCEAQGKIKANF
SLMLLSIQFFINLLHIRQYHIANSMELVQRDLLAAIVSLRVQQDSPLLDK
AIAYLWQYESKADFFRNILLFKATTLCPTLAQLLHRQLLGKLHLPQGFAS
LVEALHQNPNVNSSRNAEIVASIVARKGFSQLAQEKMVLQVLEYCKFYLQ
NADKMCAGVLSLRRLYDLSDTNQKLIKEILFKHWETLCNPEDIINGLILM
DHQELCNRILLWQHLFCSSTVACLPSNLLVPYLPLLLQLYDGLPMELPAS
SQISAIILRCLDNREMKNELPAILQKLFKWEIEKEPPWKCLNPRIIILPS
MNTTQIQVKVAHKDHLADHDMGRILPGLLTSSSHHSLTCKVFLSLLGFIA
KQINDKSSASVDFISSEAELKDFLHSKYQLKLDLLIALNQMVAHQPLRAQ
LSQHTKELLHILKDLLVHRSREQDTTDQILLLVLNLLQEILEGSENIQLS
EACKELKEQLHLLGTRSSNPLIQQSVKSLLTIIHGAWRPSEAVKIQPFQR
ARSLIEEKQSHMQVYGIQMMIDLLKKRDPATLAQGQLIIALALTTLKDKE
SYTFLNCVRLFVSLVHVMESDVLDKLSDEYLSETAHLDYRLVVGEAILKV
AQELGPLCFRYKAVLLNCFMYGSRSPVHEFRMSAFANLAQLCRLLAFQVQ
NFFHELLQLVNSELTTGGYVPSKRAAVLVLAELLNGMENLLDYQEMLLPI
YRLLKAIEADESCDPQMRQHAANGLKILNKKCTKLIQSALEEKSLQKQIK
VLGIKDDDSPQRRNRHILELN*

LD46555.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tango6-PA 921 CG18398-PA 1..921 1..921 4678 100 Plus