Clone LD46602 Report

Search the DGRC for LD46602

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:466
Well:2
Vector:pOT2
Associated Gene/TranscriptAps-RA
Protein status:LD46602.pep: gold
Preliminary Size:1704
Sequenced Size:1620

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6391 2002-01-01 Sim4 clustering to Release 2
CG6391 2002-05-18 Blastp of sequenced clone
CG6391 2003-01-01 Sim4 clustering to Release 3
Aps 2008-04-29 Release 5.5 accounting
Aps 2008-08-15 Release 5.9 accounting
Aps 2008-12-18 5.12 accounting

Clone Sequence Records

LD46602.complete Sequence

1620 bp (1620 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118969

> LD46602.complete
GTCACACTCTTTGAAAAAAGTGTCGTCTTTAGATTTTGTTTGTGCACTTT
TCGCCATTTCCCTTTGTATTCCGTCGAGTGAGGAACAGCGGAAGCCAGGG
AGCGCAAGAGTTGCCGAGAAGCACCTGCAAAATAGCGGCACGAGATCGCC
AGAAAAGCAGAAAATCGCAAGAAGCAAAAGCGACCGGCTCAACACTTCCA
CACGCAAATACCCAGAGCCCCCCACACACACACACACACACACACACATC
CAACACTTGTTGCAGTGGTCGAGGAGAAGGGGCACCACAGCGATAAGAGG
AGAAGGGACGAGGAGCAGGAGGAGAACAAGTGCCTAAGAAGACAACAACG
CGCATCTGCTATCAGCGAATACCACTGCAAACATGGTCAAGGAGAAGCCC
AACTCGACTCGCATCTACGACAAGGATGGATTTAGGCGCCGGGCTGCTTG
TATTTGCGTGAAATCGGAGAATGAGGCGGAGGTACTCTTGGTAACCTCAT
CTCGTCGCCCGGAGTTGTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAA
GAGGAGTCATCGGTGACAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGT
GGTTGGCGATCTGGGTCGTTGTCTCGGTGTATTCGAGAACAATGACCACA
TGCATCGCACCGAGGTGTTCGTGATGAACGTGACTCAGGAACTGGACGAG
TGGGAGGATTCGCGGAGCATCGGTCGCAAGCGCCAGTGGTTCACCATCGA
TGATGCACTCTCGCAGCTGGCGCTGCATAAGCCGACGCAGCAACACTATC
TGATGCAGCTGCAGCACTCGAAGACGCTGGACAACACGAATCGCGTGGTG
AACGCCACGCATCCGCCCAAGTTGACCAATGCCGCCACCCCAGCCGCATC
TCCCACTACGGCATAAAGACATCGGGATGCAGGATCCGGATGGCAGGCAG
CAGTAACCACACATGCACACCACACTTAACTGCGAGACTAACACTAACCC
CAAAACTAAACCCATACCGAGAACCAACCATACACATTTTGACATTTTGG
AAATTAACAAATAGACAGGCAGTCTTCTAGATTATGTTGGTTAAGCGATA
CTTATGTTACCCCGCATCCCCCACATAGCCCCATTTTCGTTTAAGTTTAA
GTCAAGGCGTTCATTTATGTCTTTAGTAAGTGTATCGGAACTAAATTTAT
ATGTTTACTCCAGAGCGAGTGGAGAGGAGGTGAAGAAAACAAAAACGCTA
CTCGATCAATGCTAAGCGATAACTTATTATTATTCGAGATCTATAACACG
ACGCAAAAGTAGGCGGAAACAACATGTAATAATTTTTGAGCGAATAGCAC
TTTTTGCAAACACGAAATGGAACTAAACAAACAAAATCTAAAACTAGATG
AACTAAACAACAAAATCCAGAATAGCGATATCTATTAGATTTTTCTACTC
TTTTTTATAATTTACTCAAAAGGCGTCTTAATTGATTAATGTAACAAGCA
AACCAATTGGAATCGGCTTTAGCAAGCGCAAAAGGAGATCTTAATTAACT
ATGCTAAGCTGCCTAAATAAAAACAAAAACTATTTAAGCGATGACTAACG
AAAAAAAAAAAAAAAAAAAA

LD46602.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-RA 1635 Aps-RA 36..1635 1..1600 8000 100 Plus
Aps-RB 2551 Aps-RB 845..2430 17..1602 7930 100 Plus
Aps.a 3160 Aps.a 835..2420 17..1602 7930 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10886500..10887464 1600..636 4825 100 Minus
chr3L 24539361 chr3L 10889031..10889395 382..17 1750 99.2 Minus
chr3L 24539361 chr3L 10887522..10887679 637..480 790 100 Minus
chr3L 24539361 chr3L 10887830..10887930 483..383 505 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10895445..10896411 1602..636 4835 100 Minus
3L 28110227 3L 10897978..10898343 382..17 1830 100 Minus
3L 28110227 3L 10896469..10896626 637..480 790 100 Minus
3L 28110227 3L 10896777..10896877 483..383 505 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10888545..10889511 1602..636 4835 100 Minus
3L 28103327 3L 10891078..10891443 382..17 1830 100 Minus
3L 28103327 3L 10889569..10889726 637..480 790 100 Minus
3L 28103327 3L 10889877..10889977 483..383 505 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:32:34 has no hits.

LD46602.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:33:32 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10886500..10887462 638..1600 100 <- Minus
chr3L 10887522..10887677 482..637 100 <- Minus
chr3L 10887832..10887930 383..481 100 <- Minus
chr3L 10889031..10889395 17..382 92 <- Minus
chr3L 10890148..10890163 1..16 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:21 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RC 1..534 383..916 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:04 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RC 1..534 383..916 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:05 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RA 1..534 383..916 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:15 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RC 1..534 383..916 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:01 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RA 1..534 383..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:55 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RA 36..1635 1..1600 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:03 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RA 13..1612 1..1600 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:05 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 12..27 1..16 100 -> Plus
Aps-RB 781..2364 17..1600 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:15 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RA 36..1635 1..1600 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:01 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 12..27 1..16 100 -> Plus
Aps-RB 781..2364 17..1600 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:32 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10897978..10898343 17..382 100 <- Minus
3L 10899097..10899112 1..16 100   Minus
3L 10895447..10896409 638..1600 100 <- Minus
3L 10896469..10896624 482..637 100 <- Minus
3L 10896779..10896877 383..481 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:32 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10897978..10898343 17..382 100 <- Minus
3L 10899097..10899112 1..16 100   Minus
3L 10895447..10896409 638..1600 100 <- Minus
3L 10896469..10896624 482..637 100 <- Minus
3L 10896779..10896877 383..481 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:32 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10897978..10898343 17..382 100 <- Minus
3L 10899097..10899112 1..16 100   Minus
3L 10895447..10896409 638..1600 100 <- Minus
3L 10896469..10896624 482..637 100 <- Minus
3L 10896779..10896877 383..481 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:05 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10888547..10889509 638..1600 100 <- Minus
arm_3L 10889569..10889724 482..637 100 <- Minus
arm_3L 10889879..10889977 383..481 100 <- Minus
arm_3L 10891078..10891443 17..382 100 <- Minus
arm_3L 10892197..10892212 1..16 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:37 Download gff for LD46602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10888547..10889509 638..1600 100 <- Minus
3L 10889569..10889724 482..637 100 <- Minus
3L 10889879..10889977 383..481 100 <- Minus
3L 10891078..10891443 17..382 100 <- Minus
3L 10892197..10892212 1..16 100   Minus

LD46602.pep Sequence

Translation from 382 to 915

> LD46602.pep
MVKEKPNSTRIYDKDGFRRRAACICVKSENEAEVLLVTSSRRPELWIVPG
GGVEPEEESSVTAVREVLEEAGVVGDLGRCLGVFENNDHMHRTEVFVMNV
TQELDEWEDSRSIGRKRQWFTIDDALSQLALHKPTQQHYLMQLQHSKTLD
NTNRVVNATHPPKLTNAATPAASPTTA*

LD46602.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23815-PA 187 GF23815-PA 11..187 1..177 942 99.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13955-PA 177 GG13955-PA 1..177 1..177 947 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16579-PA 180 GH16579-PA 1..180 1..177 843 91.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-PC 177 CG6391-PC 1..177 1..177 926 100 Plus
Aps-PB 177 CG6391-PB 1..177 1..177 926 100 Plus
Aps-PA 177 CG6391-PA 1..177 1..177 926 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13875-PA 180 GI13875-PA 1..180 1..177 836 91.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11750-PA 229 GL11750-PA 53..229 1..177 868 93.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19558-PA 178 GA19558-PA 1..178 1..177 895 94.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24794-PA 177 GM24794-PA 1..177 1..177 950 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17584-PA 177 GD17584-PA 1..177 1..177 950 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11730-PA 180 GJ11730-PA 1..180 1..177 835 91.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18021-PA 181 GK18021-PA 1..165 1..165 834 93.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20253-PA 177 GE20253-PA 1..177 1..177 947 99.4 Plus

LD46602.hyp Sequence

Translation from 382 to 915

> LD46602.hyp
MVKEKPNSTRIYDKDGFRRRAACICVKSENEAEVLLVTSSRRPELWIVPG
GGVEPEEESSVTAVREVLEEAGVVGDLGRCLGVFENNDHMHRTEVFVMNV
TQELDEWEDSRSIGRKRQWFTIDDALSQLALHKPTQQHYLMQLQHSKTLD
NTNRVVNATHPPKLTNAATPAASPTTA*

LD46602.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-PC 177 CG6391-PC 1..177 1..177 926 100 Plus
Aps-PB 177 CG6391-PB 1..177 1..177 926 100 Plus
Aps-PA 177 CG6391-PA 1..177 1..177 926 100 Plus