Clone LD46621 Report

Search the DGRC for LD46621

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:466
Well:21
Vector:pOT2
Associated Gene/Transcriptc12.1-RA
Protein status:LD46621.pep: gold
Preliminary Size:1377
Sequenced Size:1239

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12135 2001-01-01 Release 2 assignment
CG12135 2003-01-01 Sim4 clustering to Release 3
CG12135 2003-02-27 Blastp of sequenced clone
c12.1 2008-04-29 Release 5.5 accounting
c12.1 2008-08-15 Release 5.9 accounting
c12.1 2008-12-18 5.12 accounting

Clone Sequence Records

LD46621.complete Sequence

1239 bp (1239 high quality bases) assembled on 2003-02-27

GenBank Submission: AY069693

> LD46621.complete
ACAAAGCACGCAGTTCGGAAATTCATTTCACTTTTCATCAATTTAACAAT
TAAACGCATAACTAGCTAGTTGAAAATGACCACAGCAGCGCGTCCGACCT
TCGATCCAGCCCGCGGAGGATCCGGTCGCGGCGAAAAGGATCTGAGTGCA
CTGAGCAAGCAGTACTCCAGTCGCGATTTGCCAGGCCACACGAAACTGAA
ATACAGGGAGACTGGCCAGGGCACCAGCGATGAGAACCGCAACCGTGACT
TCCGCAAGGAGCTGGAGGAGCGCGAACGTGAGGCGCGCTCCGGAACGGGA
GCCACTTCGTCGTCGTCGGGCAAGGCACTGCCCTCCATTGTACGCAAGGC
GATTGAGGCGAACAACGCCGGCGGTGGCAGCAGTGCCGCAAAGCGTTCCA
AGCCGGACGCAGGGCAGCAGCAAGCGCAGCAGGCGGCTCAGCAGCAGGCC
GCCAATATGGACGCCGATGAGCCGCTGGACAACGATAGCTCCGATTCGGA
CAGCGATTCCGATGACGATGATGCCGCCCTGCTGGCCGAGCTGCAGAAGA
TCAAGCAGGAACGTCTGCAGGAGACGGCGCGTCGCGAGTCGGAAAAGAAG
CAGGAGGACGAACGCATACGCATGGAGAACATCCTGTCCGGCAATCCACT
GATGAACTATGAGCCCGGCACCGCCGCCTCGGCAGCGGGACGTGCCTCTG
GACTGGGCGGTGATCTAAAGATAAAGCGCCGCTGGGACGATGATGTGGTC
TTTAAGAATTGCGCCAGATCTGCGCCCGATAAGAAGACGCACTTCGTCAA
TGACGCCCTGCGCTCCGATTTCCACAAGAAGTTCATGGACAAGTACATTA
AGTAGGCAGCATCTGGGACTCGCTCTCAAGTTTCAGCCGCGCTCTTTTTT
TGTAATAGTTTAAGTAAAACAATTGTCAACCCTCTTTGTCCTTTCACCCC
TCCCCCCACAAGCTGTTCATTAAATTTCGTATTTTGTAAGATAACTCTGA
TATCCAATAATCATAAACAATCTTTCTAAGCTAAATACCGATTGGTTTCG
TACGTAGCAAACTGACCATTTTGTAAGGCATTTGCTTTTTAAGTTTTTCA
GTTTTCTTTTGAACAGTGAATGATAAATTTCTTTAAACGAGAAACATATT
TTTTAGTATGTATAAGATCTTTCTTATGTAATTAATTTTTGGAATAATTA
AATGGAATGCTAGCCAGATTAAAAAAAAAAAAAAAAAAA

LD46621.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
c12_1-RA 1394 c12_1-RA 116..1333 1..1218 6090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9209641..9210655 1218..204 4970 99.3 Minus
chrX 22417052 chrX 9210715..9210921 207..1 1035 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9317917..9318931 1218..204 5075 100 Minus
X 23542271 X 9318991..9319197 207..1 1035 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9326015..9327029 1218..204 5075 100 Minus
X 23527363 X 9327089..9327295 207..1 1035 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:10:40 has no hits.

LD46621.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:11:41 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9209639..9210652 207..1220 99 <- Minus
chrX 9210716..9210921 1..206 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:24 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 1..780 76..855 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:47:02 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 1..780 76..855 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:58:51 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 1..780 76..855 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:30 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 1..780 76..855 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:39 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 1..780 76..855 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:58:48 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 48..1267 1..1220 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:47:02 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 48..1267 1..1220 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:58:51 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 27..1246 1..1220 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:30 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 48..1267 1..1220 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:39 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
c12.1-RA 27..1246 1..1220 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:41 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
X 9317915..9318928 207..1220 99 <- Minus
X 9318992..9319197 1..206 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:41 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
X 9317915..9318928 207..1220 99 <- Minus
X 9318992..9319197 1..206 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:41 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
X 9317915..9318928 207..1220 99 <- Minus
X 9318992..9319197 1..206 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:58:51 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9211948..9212961 207..1220 99 <- Minus
arm_X 9213025..9213230 1..206 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:45 Download gff for LD46621.complete
Subject Subject Range Query Range Percent Splice Strand
X 9326013..9327026 207..1220 99 <- Minus
X 9327090..9327295 1..206 100   Minus

LD46621.pep Sequence

Translation from 75 to 854

> LD46621.pep
MTTAARPTFDPARGGSGRGEKDLSALSKQYSSRDLPGHTKLKYRETGQGT
SDENRNRDFRKELEEREREARSGTGATSSSSGKALPSIVRKAIEANNAGG
GSSAAKRSKPDAGQQQAQQAAQQQAANMDADEPLDNDSSDSDSDSDDDDA
ALLAELQKIKQERLQETARRESEKKQEDERIRMENILSGNPLMNYEPGTA
ASAAGRASGLGGDLKIKRRWDDDVVFKNCARSAPDKKTHFVNDALRSDFH
KKFMDKYIK*

LD46621.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21803-PA 252 GF21803-PA 1..252 1..259 996 87.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18981-PA 257 GG18981-PA 1..257 1..259 1013 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12902-PA 254 GH12902-PA 1..254 1..259 955 86.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
c12.1-PA 259 CG12135-PA 1..259 1..259 1319 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14379-PA 255 GI14379-PA 1..255 1..259 1032 86.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16509-PA 250 GL16509-PA 1..250 1..259 886 84.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11429-PA 250 GA11429-PA 1..250 1..259 880 83.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22219-PA 259 GM22219-PA 1..259 1..259 1333 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24660-PA 259 GD24660-PA 1..259 1..259 1339 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19417-PA 256 GJ19417-PA 1..256 1..259 1037 86.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25556-PA 253 GK25556-PA 1..253 1..259 1012 81.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15453-PA 257 GE15453-PA 1..257 1..259 1279 96.1 Plus

LD46621.hyp Sequence

Translation from 75 to 854

> LD46621.hyp
MTTAARPTFDPARGGSGRGEKDLSALSKQYSSRDLPGHTKLKYRETGQGT
SDENRNRDFRKELEEREREARSGTGATSSSSGKALPSIVRKAIEANNAGG
GSSAAKRSKPDAGQQQAQQAAQQQAANMDADEPLDNDSSDSDSDSDDDDA
ALLAELQKIKQERLQETARRESEKKQEDERIRMENILSGNPLMNYEPGTA
ASAAGRASGLGGDLKIKRRWDDDVVFKNCARSAPDKKTHFVNDALRSDFH
KKFMDKYIK*

LD46621.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
c12.1-PA 259 CG12135-PA 1..259 1..259 1319 100 Plus