Clone LD46713 Report

Search the DGRC for LD46713

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:467
Well:13
Vector:pOT2
Associated Gene/TranscriptCG7737-RA
Protein status:LD46713.pep: gold
Preliminary Size:2479
Sequenced Size:2310

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7737 2001-01-01 Release 2 assignment
CG7737 2001-07-04 Blastp of sequenced clone
CG7737 2003-01-01 Sim4 clustering to Release 3
CG7737 2008-04-29 Release 5.5 accounting
CG7737 2008-08-15 Release 5.9 accounting
CG7737 2008-12-18 5.12 accounting

Clone Sequence Records

LD46713.complete Sequence

2310 bp (2310 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052001

> LD46713.complete
GAGCTGGAGTTTTCCCAGCAGTTGGCATATAGTATATATATATATCTCCT
GATATTCCGGTAGAAATGTTCAATTGTTGAATTACTTCGGCTAAGCGGCA
TTCAAAGTTATTTTGATATTCAGTTACCCGGAATGAGTGGCGCACAGCGG
AATCAGGATCGCAAGATCGTTGTCATCGGAGCAGGAGCCTCGGGTGTGGC
CTGTGCCACCAAACTGCTGGAATTGGGCTTTCAGAATGTGCTCGTCGTGG
AGGCGGAGGATCGTCTAGGTGGCCGCATACACACTATACCCTTTGCGGAC
AACGTCATTGATCTGGGTGCCCAATGGTGTCATGGGGAACGGGACAACAT
TGTGTACGAACTGACACGGAAACAGGATGAGGAGCTGCTGGAGTCGACGG
GTCCGGTCTACGAAAACTATGAGTGCGTCCGCTCCAACGGAGATGTGGTA
CCGGAAGAGGTATCTAGTCGCCTGAAAGCCATCGTCGGGGATTCACTGGT
CACCCGGCAACTGGAGCTGCGTCACTGCAGCGGTTCCTTGGGCAGCTATC
TGACCAACAAGTTTTACGACACTCTCCGGCGTCCGGAAAACTCCGATATA
GACGCAGAGGTGGCCAGTGAGTTCTTTGTCAACTATCAGAAATTCGAGAA
CTCCGTCGAGGCCTCGGATACGCTAGAACAAGTTTCGGGACGAGGTTACC
TGGACTATTGGGAGTGCGAGGGCGATATCCTGCTAAACTGGAAGGACAAG
GGCTATGTGGAGCTTCTACGGCTTCTCATGCGCTCCAGGGAGTTAAATGT
GGAGCATGGAGTTCTGGAGCAGCGTCTCCTGCTTGGCACTCGTGTTGTGA
AGATCAACTGGAATCGGAACGACGGACGCGTGGAACTTCAAATGAGCAAT
GGAGAGACCTGTATAGCTGACCATGTGGTGGTCACGGTTTCATTGGGAGT
TCTCAAGGATCAGCACCTTCGGCTATTTGAGCCACAGCTTCCAGTAGAGA
AACAACGTGCCATTGACGGTTTGGCCTTTGGAACGGTCAACAAAATCTTT
GTGGAGTTTCCCGAGGCATTTTGGCCCGAGGATTGGACGGGTTTCACCAT
GCTCTGGCGGGACGAGGATTTGGATGACATACGCGGCACTTCTCGAGCAT
GGTTGGAGGATGTCTTTGGCTTCTACAGGGTGAGCTATCAGCCGAGAATC
TTGGCGGGCTGGATAACCAATGAGAGCGGCAGGCACATGGAAACCCTTCC
CGTTGATGAGGTCCAGGCTGGCGTTATGTACCTCTTCCGAAGATTCCTGA
GGTGGAAAATCCCAGATCCCGCGAATTTCCGCACCTCTGCCTGGTATACG
AATGACAATTTTCGTGGGTCCTACTCCTATCGATCCATGGACACGGAGCA
GCTGGGAACGGGTGCACGGGAGTTATCCCATCCCCTGACCGTGGTGGCCA
CCACTCCGGAGAAGGACAAGGACTCGGAGGACGAGGCGTGGCAGCAGAGT
CGCTGCGATAGACCCATTGTCCAGTTCGCCGGAGAAGCGTCCAGCGAGCA
CTACTACTCCACGGTTCACGGAGCAGTCGAGGCGGGATGGCGGGAGGCCA
GACGACTGGCCCAGTTTTACGGAATAAGCGTGTCCCGTTCTGGAACCAAA
TCGCAACTCTAGCTGTAGGCTAGGATATCGTAGAACATGTATAGACGACA
GCGATACCTGACCCAGTTATACGTGTGGATGTAGAATTCTGTCTTCGCAC
TACAAGATACAATCAAGAAAACTGATCAGTACATCCTGGATAGACTTCAT
ATGCCTAAGCTAATAATTTACACATTTGCCATAGGTTAGCATAGGTGACA
GATTATATTTACGAGTTTATATGTACGTGAGCATGTCAATATGTCAACAA
GTGCGCTGCCCAATAAAGCTGTGTTTAAGTCTTCTCTAACCTAAATAAAG
TTAATATATACATCATCAATTGCTAAGCTAATGAAAAACGCTTCCCTCTC
AATCGCATTTAAAATAGTTTTTTTTTTTTATTAGTTTCTCACTTGTTTTC
AACAATTTGTCACTACGTTTTTGGTGAAATCAGTTTTCGAAATGAGACAT
GTCGTCACACAGAACTTCACATTGTATCCAATATGCTTCAGTTAGTGAGT
GTATATACAACTGAGATACAATACGATTAGCTTTAGGTTTTACGGGGGGA
TTAACTCTGTACTTTGATTTCAACAACGTGTAATACATACATTTATAATT
AAGTCATTCTTTGAACACAAATAAATTTTGTACAACAAGTTTAAAAAAAA
AAAAAAAAAA

LD46713.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7737-RA 2363 CG7737-RA 72..2363 1..2292 11460 100 Plus
CG7737.a 2246 CG7737.a 70..2246 116..2292 10885 100 Plus
skf-RB 2701 skf-RB 2411..2701 2293..2003 1455 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7112037..7114213 115..2292 10750 99.7 Plus
chr2R 21145070 chr2R 7110365..7110479 1..115 575 100 Plus
chr3L 24539361 chr3L 17731785..17731863 1520..1598 200 83.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11224569..11226747 115..2293 10895 100 Plus
2R 25286936 2R 11222896..11223010 1..115 575 100 Plus
3L 28110227 3L 17742161..17742239 1520..1598 200 83.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11225768..11227946 115..2293 10895 100 Plus
2R 25260384 2R 11224095..11224209 1..115 575 100 Plus
3L 28103327 3L 17735261..17735339 1520..1598 200 83.5 Plus
Blast to na_te.dros performed on 2019-03-16 18:07:48 has no hits.

LD46713.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:08:25 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7110365..7110479 1..115 100 -> Plus
chr2R 7112038..7114213 116..2292 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:28 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RA 1..1530 133..1662 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:11 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RA 1..1530 133..1662 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:10 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RB 86..1632 116..1662 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:33 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RA 1..1530 133..1662 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:47 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RB 86..1632 116..1662 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:08:49 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RA 26..2317 1..2292 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:11 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RA 26..2317 1..2292 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:10 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RA 26..2317 1..2292 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:34 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RA 26..2317 1..2292 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:47 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
CG7737-RA 26..2317 1..2292 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:25 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11222896..11223010 1..115 100 -> Plus
2R 11224570..11226746 116..2292 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:25 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11222896..11223010 1..115 100 -> Plus
2R 11224570..11226746 116..2292 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:25 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11222896..11223010 1..115 100 -> Plus
2R 11224570..11226746 116..2292 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:10 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7110401..7110515 1..115 100 -> Plus
arm_2R 7112075..7114251 116..2292 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:28 Download gff for LD46713.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11224095..11224209 1..115 100 -> Plus
2R 11225769..11227945 116..2292 100   Plus

LD46713.pep Sequence

Translation from 132 to 1661

> LD46713.pep
MSGAQRNQDRKIVVIGAGASGVACATKLLELGFQNVLVVEAEDRLGGRIH
TIPFADNVIDLGAQWCHGERDNIVYELTRKQDEELLESTGPVYENYECVR
SNGDVVPEEVSSRLKAIVGDSLVTRQLELRHCSGSLGSYLTNKFYDTLRR
PENSDIDAEVASEFFVNYQKFENSVEASDTLEQVSGRGYLDYWECEGDIL
LNWKDKGYVELLRLLMRSRELNVEHGVLEQRLLLGTRVVKINWNRNDGRV
ELQMSNGETCIADHVVVTVSLGVLKDQHLRLFEPQLPVEKQRAIDGLAFG
TVNKIFVEFPEAFWPEDWTGFTMLWRDEDLDDIRGTSRAWLEDVFGFYRV
SYQPRILAGWITNESGRHMETLPVDEVQAGVMYLFRRFLRWKIPDPANFR
TSAWYTNDNFRGSYSYRSMDTEQLGTGARELSHPLTVVATTPEKDKDSED
EAWQQSRCDRPIVQFAGEASSEHYYSTVHGAVEAGWREARRLAQFYGISV
SRSGTKSQL*

LD46713.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12528-PA 509 GF12528-PA 1..509 1..509 2474 89.8 Plus
Dana\GF10138-PA 472 GF10138-PA 9..471 11..499 933 41.2 Plus
Dana\GF23894-PA 478 GF23894-PA 34..472 26..496 886 41.6 Plus
Dana\GF18451-PA 594 GF18451-PA 327..566 242..492 310 30.9 Plus
Dana\GF14703-PA 514 GF14703-PA 40..509 8..499 291 25.1 Plus
Dana\GF18451-PA 594 GF18451-PA 50..117 11..77 168 47.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20170-PA 509 GG20170-PA 1..509 1..509 2638 96.3 Plus
Dere\GG15049-PA 476 GG15049-PA 9..469 11..496 976 42.5 Plus
Dere\GG15789-PA 477 GG15789-PA 33..471 26..496 893 42.4 Plus
Dere\GG11620-PA 583 GG11620-PA 37..555 7..492 403 26.5 Plus
Dere\GG21160-PA 504 GG21160-PA 255..497 231..496 186 27 Plus
Dere\GG21160-PA 504 GG21160-PA 37..109 8..79 159 45.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19935-PA 519 GH19935-PA 2..498 4..499 2091 77.2 Plus
Dgri\GH15343-PA 478 GH15343-PA 6..474 2..496 1080 44.6 Plus
Dgri\GH18003-PA 616 GH18003-PA 148..610 8..496 1002 45.3 Plus
Dgri\GH15342-PA 481 GH15342-PA 10..475 5..496 1000 45.2 Plus
Dgri\GH19936-PA 516 GH19936-PA 55..514 24..496 957 41.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7737-PB 543 CG7737-PB 35..543 1..509 2684 100 Plus
CG7737-PA 509 CG7737-PA 1..509 1..509 2684 100 Plus
CG7460-PC 486 CG7460-PC 10..485 4..502 1262 49.8 Plus
CG7460-PB 486 CG7460-PB 10..485 4..502 1262 49.8 Plus
CG5653-PA 476 CG5653-PA 9..469 11..496 984 43.3 Plus
CG6034-PA 479 CG6034-PA 11..473 4..496 959 42.1 Plus
CG8032-PB 583 CG8032-PB 322..555 248..492 289 30.2 Plus
CG8032-PA 583 CG8032-PA 322..555 248..492 289 30.2 Plus
Su(var)3-3-PC 870 CG17149-PC 580..808 252..496 221 30.1 Plus
Su(var)3-3-PB 890 CG17149-PB 600..828 252..496 221 30.1 Plus
Su(var)3-3-PA 890 CG17149-PA 600..828 252..496 221 30.1 Plus
CG8032-PB 583 CG8032-PB 37..108 7..77 164 47.2 Plus
CG8032-PA 583 CG8032-PA 37..108 7..77 164 47.2 Plus
CG10561-PA 504 CG10561-PA 279..501 256..500 164 26.6 Plus
CG10561-PA 504 CG10561-PA 37..112 8..82 157 44.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19892-PA 508 GI19892-PA 2..508 4..509 2098 77.3 Plus
Dmoj\GI12393-PA 478 GI12393-PA 25..471 27..496 1191 49.7 Plus
Dmoj\GI12948-PA 494 GI12948-PA 21..481 11..497 1117 44.7 Plus
Dmoj\GI12947-PA 480 GI12947-PA 13..475 8..496 1046 46.7 Plus
Dmoj\GI19893-PA 452 GI19893-PA 3..451 43..509 782 38.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19976-PA 508 GL19976-PA 1..508 1..509 2377 86.4 Plus
Dper\GL11895-PA 472 GL11895-PA 3..468 5..496 1097 45.5 Plus
Dper\GL25224-PA 176 GL25224-PA 28..174 333..498 377 44.6 Plus
Dper\GL23965-PA 596 GL23965-PA 327..567 242..492 303 30.2 Plus
Dper\GL25222-PA 162 GL25222-PA 39..151 26..145 266 48.3 Plus
Dper\GL23965-PA 596 GL23965-PA 48..121 9..81 164 41.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20553-PA 508 GA20553-PA 1..508 1..509 2368 86.1 Plus
Dpse\GA20369-PA 486 GA20369-PA 10..479 4..496 1269 51.4 Plus
Dpse\GA19035-PA 472 GA19035-PA 3..468 5..496 1107 45.9 Plus
Dpse\GA19311-PA 482 GA19311-PA 39..480 26..498 989 44.9 Plus
Dpse\GA20779-PA 596 GA20779-PA 327..567 242..492 303 30.2 Plus
Dpse\GA20779-PA 596 GA20779-PA 48..121 9..81 160 40.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21259-PA 509 GM21259-PA 1..509 1..509 2659 96.9 Plus
Dsec\GM24902-PA 476 GM24902-PA 9..469 11..496 980 43.1 Plus
Dsec\GM24313-PA 479 GM24313-PA 18..473 11..496 909 43.1 Plus
Dsec\GM23747-PA 583 GM23747-PA 316..555 242..492 304 30.5 Plus
Dsec\GM22263-PA 888 GM22263-PA 598..826 252..496 188 27.3 Plus
Dsec\GM23747-PA 583 GM23747-PA 36..108 6..77 171 46.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10773-PA 509 GD10773-PA 1..509 1..509 2673 97.6 Plus
Dsim\GD12952-PA 476 GD12952-PA 9..469 11..496 986 43.3 Plus
Dsim\GD12383-PA 479 GD12383-PA 33..473 26..496 915 41.7 Plus
Dsim\GD18558-PA 583 GD18558-PA 316..555 242..492 306 30.5 Plus
Dsim\GD18558-PA 583 GD18558-PA 37..108 7..77 169 45.8 Plus
Dsim\GD24185-PA 465 GD24185-PA 37..109 8..79 159 45.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15061-PA 505 GJ15061-PA 2..505 4..509 2063 77.4 Plus
Dvir\GJ12284-PA 486 GJ12284-PA 33..479 27..496 1232 51.8 Plus
Dvir\GJ13090-PA 487 GJ13090-PA 17..485 7..501 1166 47.4 Plus
Dvir\GJ13089-PA 476 GJ13089-PA 1..470 1..496 1093 46.3 Plus
Dvir\GJ15062-PA 513 GJ15062-PA 33..509 7..496 951 40.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19322-PA 501 GK19322-PA 2..501 4..509 2127 76.3 Plus
Dwil\GK12302-PA 486 GK12302-PA 10..479 4..496 1255 52 Plus
Dwil\GK12329-PA 490 GK12329-PA 24..484 11..496 1051 46 Plus
Dwil\GK19228-PA 473 GK19228-PA 24..470 26..496 998 44.9 Plus
Dwil\GK19151-PA 467 GK19151-PA 9..465 11..496 978 43.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12859-PA 509 GE12859-PA 1..509 1..509 2619 95.5 Plus
Dyak\GE21272-PA 476 GE21272-PA 9..469 11..496 975 42.3 Plus
Dyak\GE22127-PA 477 GE22127-PA 33..471 26..496 893 41.5 Plus
Dyak\GE25891-PA 583 GE25891-PA 316..555 242..492 308 30.9 Plus
Dyak\GE13233-PA 504 GE13233-PA 253..497 229..496 188 26.2 Plus
Dyak\GE25891-PA 583 GE25891-PA 34..108 4..77 173 45.3 Plus
Dyak\GE13233-PA 504 GE13233-PA 37..109 8..79 159 45.9 Plus

LD46713.hyp Sequence

Translation from 132 to 1661

> LD46713.hyp
MSGAQRNQDRKIVVIGAGASGVACATKLLELGFQNVLVVEAEDRLGGRIH
TIPFADNVIDLGAQWCHGERDNIVYELTRKQDEELLESTGPVYENYECVR
SNGDVVPEEVSSRLKAIVGDSLVTRQLELRHCSGSLGSYLTNKFYDTLRR
PENSDIDAEVASEFFVNYQKFENSVEASDTLEQVSGRGYLDYWECEGDIL
LNWKDKGYVELLRLLMRSRELNVEHGVLEQRLLLGTRVVKINWNRNDGRV
ELQMSNGETCIADHVVVTVSLGVLKDQHLRLFEPQLPVEKQRAIDGLAFG
TVNKIFVEFPEAFWPEDWTGFTMLWRDEDLDDIRGTSRAWLEDVFGFYRV
SYQPRILAGWITNESGRHMETLPVDEVQAGVMYLFRRFLRWKIPDPANFR
TSAWYTNDNFRGSYSYRSMDTEQLGTGARELSHPLTVVATTPEKDKDSED
EAWQQSRCDRPIVQFAGEASSEHYYSTVHGAVEAGWREARRLAQFYGISV
SRSGTKSQL*

LD46713.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7737-PB 543 CG7737-PB 35..543 1..509 2684 100 Plus
CG7737-PA 509 CG7737-PA 1..509 1..509 2684 100 Plus
CG7460-PC 486 CG7460-PC 10..485 4..502 1262 49.8 Plus
CG7460-PB 486 CG7460-PB 10..485 4..502 1262 49.8 Plus
CG5653-PA 476 CG5653-PA 9..469 11..496 984 43.3 Plus