BDGP Sequence Production Resources |
Search the DGRC for LD46744
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 467 |
Well: | 44 |
Vector: | pOT2 |
Associated Gene/Transcript | Tim10-RA |
Protein status: | LD46744.pep: gold |
Preliminary Size: | 811 |
Sequenced Size: | 679 |
Gene | Date | Evidence |
---|---|---|
CG9878 | 2001-01-01 | Release 2 assignment |
CG9878 | 2001-10-10 | Blastp of sequenced clone |
CG9878 | 2003-01-01 | Sim4 clustering to Release 3 |
Tim10 | 2008-04-29 | Release 5.5 accounting |
Tim10 | 2008-08-15 | Release 5.9 accounting |
Tim10 | 2008-12-18 | 5.12 accounting |
679 bp (679 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061513
> LD46744.complete ATGTCGTTGGGCAACGCAGGGCGAATCGCTGTCTGTTGGACTGTTTTGAC CGTGGGTGGCGTCTACGCATTTGTGCTGTCAAAGAGATCCGTTGAGAACC GGCGTTACGAGAGCATGCGAGTGCGTGAGCGCATGAGGAAGGCAAACCAA GGGGATTACGACTCAAGCGCAGCATCGGACAGGCGATTCGATTACTAAGC GGCAGCATCCAGTACCTAAAACCCATCAGTAACACACCCACACCCACACA ATGGCATTGCCCCAGATCAGCACCGCAGACCAGGCCAAGCTGCAGCTGAT GCAGGAAATGGAGATCGAAATGATGTCCGATTTATATAACCGCATGACGA ACGCTTGCCACAAAAAGTGCATTCCGCCGCGCTACTCCGAGTCGGAGTTG GGCAAAGGCGAGATGGTGTGCATCGATCGCTGTGTGGCCAAATATCTGGA CATTCACGAGAAGATCGGCAAGAAGCTGACGGCCATGTCCATGCAGGACG AGGAGCTGATGAAGAAGATGTCTAGTTAACCTGGCACCCATTAACCCACA TTTCCGCTTAACCAATGTGCATTTTTGAAGCGCTACGATTGTTAGAGGTA CATGTACAAAACACCCCGTTGTAGAGAATAAACCACAGATTTATGTGTGC TACATAATATCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17577122..17577486 | 402..38 | 1825 | 100 | Minus |
chr2R | 21145070 | chr2R | 17576700..17576960 | 661..401 | 1290 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 17577556..17577594 | 39..1 | 180 | 97.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21690637..21691001 | 402..38 | 1825 | 100 | Minus |
2R | 25286936 | 2R | 21690214..21690475 | 662..401 | 1310 | 100 | Minus |
2R | 25286936 | 2R | 21691071..21691109 | 39..1 | 195 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21691836..21692200 | 402..38 | 1825 | 100 | Minus |
2R | 25260384 | 2R | 21691413..21691674 | 662..401 | 1310 | 100 | Minus |
2R | 25260384 | 2R | 21692270..21692308 | 39..1 | 195 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6386..6442 | 333..278 | 138 | 73.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17576700..17576959 | 402..661 | 99 | <- | Minus |
chr2R | 17577123..17577485 | 39..401 | 100 | <- | Minus |
chr2R | 17577557..17577594 | 1..38 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tim10-RA | 1..279 | 251..529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tim10-RA | 1..279 | 251..529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tim10-RB | 1..279 | 251..529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tim10-RA | 1..279 | 251..529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tim10-RB | 1..279 | 251..529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tim10-RA | 1..661 | 1..661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tim10-RA | 30..690 | 1..661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42497-RA | 31..691 | 1..661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tim10-RA | 1..661 | 1..661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42497-RA | 31..691 | 1..661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21690215..21690474 | 402..661 | 100 | <- | Minus |
2R | 21690638..21691000 | 39..401 | 100 | <- | Minus |
2R | 21691072..21691109 | 1..38 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21690215..21690474 | 402..661 | 100 | <- | Minus |
2R | 21690638..21691000 | 39..401 | 100 | <- | Minus |
2R | 21691072..21691109 | 1..38 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21690215..21690474 | 402..661 | 100 | <- | Minus |
2R | 21690638..21691000 | 39..401 | 100 | <- | Minus |
2R | 21691072..21691109 | 1..38 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17577720..17577979 | 402..661 | 100 | <- | Minus |
arm_2R | 17578143..17578505 | 39..401 | 100 | <- | Minus |
arm_2R | 17578577..17578614 | 1..38 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21691414..21691673 | 402..661 | 100 | <- | Minus |
2R | 21691837..21692199 | 39..401 | 100 | <- | Minus |
2R | 21692271..21692308 | 1..38 | 100 | Minus |
Translation from 250 to 528
> LD46744.hyp MALPQISTADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESEL GKGEMVCIDRCVAKYLDIHEKIGKKLTAMSMQDEELMKKMSS*
Translation from 250 to 528
> LD46744.pep MALPQISTADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESEL GKGEMVCIDRCVAKYLDIHEKIGKKLTAMSMQDEELMKKMSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11625-PA | 92 | GF11625-PA | 1..92 | 1..92 | 474 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20751-PA | 92 | GG20751-PA | 1..92 | 1..92 | 472 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22682-PA | 92 | GH22682-PA | 1..92 | 1..92 | 457 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tim10-PA | 92 | CG9878-PA | 1..92 | 1..92 | 475 | 100 | Plus |
Tim10-PB | 92 | CG9878-PB | 1..92 | 1..92 | 475 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20610-PA | 93 | GI20610-PA | 3..93 | 2..92 | 459 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11269-PA | 92 | GL11269-PA | 1..92 | 1..92 | 425 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22092-PA | 92 | GA22092-PA | 1..92 | 1..92 | 425 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15694-PA | 92 | GM15694-PA | 1..92 | 1..92 | 478 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25173-PA | 92 | GD25173-PA | 1..92 | 1..92 | 478 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21050-PA | 92 | GJ21050-PA | 1..92 | 1..92 | 462 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10647-PA | 92 | GK10647-PA | 1..92 | 1..92 | 467 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13683-PA | 92 | GE13683-PA | 1..92 | 1..92 | 472 | 97.8 | Plus |