Clone LD46760 Report

Search the DGRC for LD46760

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:467
Well:60
Vector:pOT2
Associated Gene/TranscriptCG1440-RA
Protein status:LD46760.pep: gold
Preliminary Size:1983
Sequenced Size:1873

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1440 2002-05-20 Blastp of sequenced clone
CG1440 2003-01-01 Sim4 clustering to Release 3
CG1440 2008-04-29 Release 5.5 accounting
CG1440 2008-08-15 Release 5.9 accounting
CG1440 2008-12-18 5.12 accounting

Clone Sequence Records

LD46760.complete Sequence

1873 bp (1873 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118343

> LD46760.complete
GAAACAAAAAAAACACTCCACAGCAAACCAAAATAAAATCAAATTAAAAA
AATTATCCAAATTGCGCATAGTACGACTGCAGTAGCCAGAAGTGGTCAGG
AGTTCGGAAAACTGAAGGACATCCAAATCTGGGTCGAGCAAAATTCGAAG
TGACCTTATAAAATCAAAACAAGTGTAAAATCACAAAAGAAAGGAGAAAA
AACCATTAAATATGTCTGACAACAACAGCGGATCCGGAGGAGGTGGAAGC
GGTGGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAGAACTC
GACGCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTTGGAAA
AATGGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGCAGAAC
GTCTGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAGGCACT
GGAGACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGGCAAGC
CGGTGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGGCCCTC
AACTGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAGTTCGA
ATTCTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTGCAACT
ACTTTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGGTTGAT
GGTCGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGCGGCCA
GTGGGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCCAAAGA
AATGCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGAACGCC
ATACTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTGCTGAT
GGAGAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGAGCAAA
TGGCCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCTCGGAG
ACCTTCACCTGGGAGTACTATGACAAGAGCAAGAACTATCAGTCAATCGG
ACCCGTTAGTTCGCTGGAGTTCTATGAGCGTTATGTTAAGCCGCATTTCA
ACGTGGAGGACAAAGTGTGCCTGGTCACCGATCCTCGGCCGACGAGTAGC
TATGACCAGGCATACACTGTTGACTGCCTGGGCAACGTGGTTGGCGGTCG
ACCCGTTCTGTATAACAATCAGTCCGTCGAACTGCTCCTTGCGGTTGTCA
CCAAGTCGCTAAAGGCCGGCGAGGCCGTTTGGTTTGGCTGCGAGGTTAGC
AAGCGATTCGCCTCCAAGCAGGGCATCGAGGATGTGGATGTCCACGATTT
TAAGCTGGTCTTCGACATTGACATACAAACGACATTCTCCAAGGCAGACC
GCCTGATCTACGGTGAATCGGCCATGACCCATGCCATGGTTTTCACCGCC
GTATCCGTGGATAAGAGCGGCGTGGCCCAGAAATTGCGTGTGGAGAACTC
GTGGGGTGAGGATCGCGGCGAGAAGGGCTATCTGGTGATGAACGCCGATT
GGTTTAGGGAGTTTGGATTCGAGGTGGTCGTCGACAAGAAGTACGTGCCC
GAGGATGTGTTGCGCGTGTTCGACATGGATCCGATCGTACTGCCTGCCTG
GGATCCCATGGGTACGCTAGCACAGTAGGTCCAGGTTGCCATCAAGACAC
ACCCAACACACCTAACACACACCCAACACACACACACACACCCAACACAC
ACACACACACCCAACACACACCCAACACACACACACACATATAAAAAAAC
ATATATTAAAATACAATATATATAAAGCTTTACGAGCAGCAATCTTCGAG
CAGCAAAAAAAAAAAAAAAAAAA

LD46760.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440.a 2281 CG1440.a 86..1940 1..1855 9275 100 Plus
CG1440-RA 1939 CG1440-RA 86..1939 1..1854 9270 100 Plus
CG1440.b 2320 CG1440.b 402..2041 216..1855 8200 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8330851..8331500 216..865 3205 99.5 Plus
chrX 22417052 chrX 8331559..8332036 864..1341 2345 99.4 Plus
chrX 22417052 chrX 8332287..8332682 1463..1854 1785 97.7 Plus
chrX 22417052 chrX 8328823..8329037 1..215 1075 100 Plus
chrX 22417052 chrX 8332103..8332223 1342..1462 605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8439109..8439758 216..865 3250 100 Plus
X 23542271 X 8439817..8440294 864..1341 2390 100 Plus
X 23542271 X 8440545..8440937 1463..1855 1965 100 Plus
X 23542271 X 8437080..8437294 1..215 1075 100 Plus
X 23542271 X 8440361..8440481 1342..1462 605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8447207..8447856 216..865 3250 100 Plus
X 23527363 X 8447915..8448392 864..1341 2390 100 Plus
X 23527363 X 8448643..8449035 1463..1855 1965 100 Plus
X 23527363 X 8445178..8445392 1..215 1075 100 Plus
X 23527363 X 8448459..8448579 1342..1462 605 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:10:30 has no hits.

LD46760.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:11:35 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8328823..8329037 1..215 100 -> Plus
chrX 8330851..8331500 216..865 99 -> Plus
chrX 8331561..8332036 866..1341 99 -> Plus
chrX 8332103..8332223 1342..1462 100 -> Plus
chrX 8332287..8332520 1463..1696 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:35 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1467 212..1678 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:30 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1467 212..1678 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:16 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1467 212..1678 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:13 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1467 212..1678 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:01 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1467 212..1678 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:25 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1854 1..1854 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:30 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1854 1..1854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:16 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1854 1..1854 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:13 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 1..1854 1..1854 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:01 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RA 24..1877 1..1854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:35 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
X 8440361..8440481 1342..1462 100 -> Plus
X 8437080..8437294 1..215 100 -> Plus
X 8439109..8439758 216..865 100 -> Plus
X 8439819..8440294 866..1341 100 -> Plus
X 8440545..8440936 1463..1854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:35 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
X 8440361..8440481 1342..1462 100 -> Plus
X 8437080..8437294 1..215 100 -> Plus
X 8439109..8439758 216..865 100 -> Plus
X 8439819..8440294 866..1341 100 -> Plus
X 8440545..8440936 1463..1854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:35 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
X 8440361..8440481 1342..1462 100 -> Plus
X 8437080..8437294 1..215 100 -> Plus
X 8439109..8439758 216..865 100 -> Plus
X 8439819..8440294 866..1341 100 -> Plus
X 8440545..8440936 1463..1854 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:16 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8331113..8331327 1..215 100 -> Plus
arm_X 8333142..8333791 216..865 100 -> Plus
arm_X 8333852..8334327 866..1341 100 -> Plus
arm_X 8334394..8334514 1342..1462 100 -> Plus
arm_X 8334578..8334969 1463..1854 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:47 Download gff for LD46760.complete
Subject Subject Range Query Range Percent Splice Strand
X 8445178..8445392 1..215 100 -> Plus
X 8447207..8447856 216..865 100 -> Plus
X 8447917..8448392 866..1341 100 -> Plus
X 8448459..8448579 1342..1462 100 -> Plus
X 8448643..8449034 1463..1854 100   Plus

LD46760.pep Sequence

Translation from 211 to 1677

> LD46760.pep
MSDNNSGSGGGGSGGGGAGNNNSANSGKNSTHRFAETSVITNQLLEKWRK
NFYSEPKNLLAQNVCSRVDPFDVCLSRKALETTNHVFNYKVETEGKPVTN
QRSSGRCWLFAALNCIRLPFMKNYNLDEFEFSQAFLFYWDKIERCNYFLN
NVVKTAQRGEKVDGRLVSFLLLDPTSDGGQWDMLVNLITKHGLMPKKCFP
ESFSCESSLRMNAILKSKLREYARNLRVLMEKNPTDEEIACKIQEQMAEI
YKVVGICLGIPSETFTWEYYDKSKNYQSIGPVSSLEFYERYVKPHFNVED
KVCLVTDPRPTSSYDQAYTVDCLGNVVGGRPVLYNNQSVELLLAVVTKSL
KAGEAVWFGCEVSKRFASKQGIEDVDVHDFKLVFDIDIQTTFSKADRLIY
GESAMTHAMVFTAVSVDKSGVAQKLRVENSWGEDRGEKGYLVMNADWFRE
FGFEVVVDKKYVPEDVLRVFDMDPIVLPAWDPMGTLAQ*

LD46760.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22364-PA 510 GF22364-PA 40..510 20..488 2403 94.3 Plus
Dana\GF12272-PA 521 GF12272-PA 17..474 40..463 755 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18250-PA 486 GG18250-PA 1..486 1..488 2551 96.9 Plus
Dere\GG22041-PA 475 GG22041-PA 5..473 40..486 740 35.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12231-PA 492 GH12231-PA 39..492 35..488 2217 89 Plus
Dgri\GH20841-PA 472 GH20841-PA 18..470 45..486 739 33.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PA 488 CG1440-PA 1..488 1..488 2589 100 Plus
CG1440-PD 551 CG1440-PD 65..551 2..488 2581 99.8 Plus
CG1440-PC 511 CG1440-PC 25..511 2..488 2581 99.8 Plus
CG1440-PB 368 CG1440-PB 1..368 121..488 1944 100 Plus
CG13423-PA 476 CG13423-PA 4..474 39..486 725 35.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15765-PA 524 GI15765-PA 74..524 38..488 2334 94.7 Plus
Dmoj\GI20946-PA 486 GI20946-PA 7..484 35..486 774 33.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20308-PA 486 GL20308-PA 21..486 28..488 2304 91.2 Plus
Dper\GL17669-PA 467 GL17669-PA 5..465 40..486 729 35 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12954-PA 486 GA12954-PA 21..486 28..488 2305 91.2 Plus
Dpse\GA12276-PA 467 GA12276-PA 5..465 40..486 742 35 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21572-PA 543 GM21572-PA 65..543 2..488 2536 96.5 Plus
Dsec\GM22024-PA 476 GM22024-PA 4..474 39..486 753 35.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16898-PA 456 GD16898-PA 2..456 34..488 2434 98.7 Plus
Dsim\GD11522-PA 476 GD11522-PA 4..474 39..486 754 35.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18622-PA 510 GJ18622-PA 46..510 24..488 2325 91.2 Plus
Dvir\GJ20667-PA 482 GJ20667-PA 18..480 45..486 733 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19985-PA 518 GK19985-PA 32..518 16..488 2358 89.7 Plus
Dwil\GK20627-PA 491 GK20627-PA 2..489 18..486 772 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15781-PA 517 GE15781-PA 33..517 2..488 2554 96.7 Plus
Dyak\GE12121-PA 476 GE12121-PA 5..474 40..486 729 35 Plus

LD46760.hyp Sequence

Translation from 211 to 1677

> LD46760.hyp
MSDNNSGSGGGGSGGGGAGNNNSANSGKNSTHRFAETSVITNQLLEKWRK
NFYSEPKNLLAQNVCSRVDPFDVCLSRKALETTNHVFNYKVETEGKPVTN
QRSSGRCWLFAALNCIRLPFMKNYNLDEFEFSQAFLFYWDKIERCNYFLN
NVVKTAQRGEKVDGRLVSFLLLDPTSDGGQWDMLVNLITKHGLMPKKCFP
ESFSCESSLRMNAILKSKLREYARNLRVLMEKNPTDEEIACKIQEQMAEI
YKVVGICLGIPSETFTWEYYDKSKNYQSIGPVSSLEFYERYVKPHFNVED
KVCLVTDPRPTSSYDQAYTVDCLGNVVGGRPVLYNNQSVELLLAVVTKSL
KAGEAVWFGCEVSKRFASKQGIEDVDVHDFKLVFDIDIQTTFSKADRLIY
GESAMTHAMVFTAVSVDKSGVAQKLRVENSWGEDRGEKGYLVMNADWFRE
FGFEVVVDKKYVPEDVLRVFDMDPIVLPAWDPMGTLAQ*

LD46760.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PA 488 CG1440-PA 1..488 1..488 2589 100 Plus
CG1440-PD 551 CG1440-PD 65..551 2..488 2581 99.8 Plus
CG1440-PC 511 CG1440-PC 25..511 2..488 2581 99.8 Plus
CG1440-PB 368 CG1440-PB 1..368 121..488 1944 100 Plus
CG13423-PA 476 CG13423-PA 4..474 39..486 725 35.4 Plus