Clone LD46811 Report

Search the DGRC for LD46811

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:468
Well:11
Vector:pOT2
Associated Gene/TranscriptCG4338-RA
Protein status:LD46811.pep: gold
Preliminary Size:1088
Sequenced Size:971

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4338 2001-01-01 Release 2 assignment
CG4338 2003-01-01 Sim4 clustering to Release 3
CG4338 2003-02-22 Blastp of sequenced clone
CG4338 2008-04-29 Release 5.5 accounting
CG4338 2008-08-15 Release 5.9 accounting
CG4338 2008-12-18 5.12 accounting

Clone Sequence Records

LD46811.complete Sequence

971 bp (971 high quality bases) assembled on 2003-02-22

GenBank Submission: BT010036

> LD46811.complete
TCGTCGGCTTGGCCACCACGAGACGTTAAAAACACTTTGATTCTTTTTTG
CTTTGATAAAGTTTTAAACCAAAACATAATGAGTGGACGGAACCGCGGCA
AAGGAAAGAAGGGTGGAGGAGGACCCTACCGCAATGTCAAAGCGAATCAC
AATTGTGCCCGCAGCTTTGCTCAGCAGGCCAACGAGCTGGCCAGCAGCAG
TAGCAGCGAAAATGAAAGTTCCGACTCGGAATCCTCGGGAGATGGAGCCC
AAAATGATCTCGGCCAGCCGCCGGAGTTTGCGGTGGCCATGTGGGACCTC
AACCACTGCGATCCAAAGAAGTGTTCGGGCAGGAAACTGGCACGCCTAGG
ACTCATTTCAAATCTTCGACTGGGTCAGAAGTTTCCTGGCCTTGTCCTCT
CGCCCGTTGGCCAGTTGTGTGTAAGTCCGCTGGATCGCGATGTGGTGGCC
TCTTCGGGCGTGGCCGTGATCGACTGCTCGTGGGCCAAGCTGGACGAGAC
GCCCTTTGGAAGGATGCGCAGCCCACATCCGCGACTGCTGCCCTTCTTGG
TGGCCGCCAATCCCATCAACTACGGAAAGCCCTGCAAGCTCAGCTGCGTG
GAGGCCATAGCCGCCACTCTATACATCTGTGGATTCACGGAAGAGGCTCG
CTGGTTTCTGGGCAAGTTCTCATGGGGTCATGCCTTTCTGGAGCTAAACG
ACAAGCTTCTCAATGCCTATGCAGCCTGCAAGAGCAGCGATGAGATTGTT
AAGGTGCAGAATGAGTACCTGGAGAAGGAACAGCAGGAGCGGGATAAGCC
TAGGGATCTTCGCGACTTCTATCCCACCAGCAGTAGTAGTAGTAGTAGCG
AGACGGAGACCGAGGGCGATGATGAAGACACAAAAGCGAAACCGAAGAAC
TAATACAAGGTGCTGACATTTATTACCTTATGACAAAACAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

LD46811.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4338-RA 939 CG4338-RA 1..939 1..939 4695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11100166..11101104 1..939 4695 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15275536..15276475 1..940 4700 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15016367..15017306 1..940 4700 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:01:56 has no hits.

LD46811.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:02:45 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11100166..11101104 1..939 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:40 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 1..825 79..903 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:51 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 1..825 79..903 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:14:47 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 1..825 79..903 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:16 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 1..825 79..903 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:13:35 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 1..825 79..903 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:22 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 1..939 1..939 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:50 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 1..939 1..939 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:47 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 15..953 1..939 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:16 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 1..939 1..939 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:13:35 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
CG4338-RA 15..953 1..939 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:45 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15275536..15276474 1..939 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:45 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15275536..15276474 1..939 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:45 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15275536..15276474 1..939 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:47 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11101258..11102196 1..939 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:37 Download gff for LD46811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15016367..15017305 1..939 100   Plus

LD46811.hyp Sequence

Translation from 0 to 902

> LD46811.hyp
SSAWPPRDVKNTLILFCFDKVLNQNIMSGRNRGKGKKGGGGPYRNVKANH
NCARSFAQQANELASSSSSENESSDSESSGDGAQNDLGQPPEFAVAMWDL
NHCDPKKCSGRKLARLGLISNLRLGQKFPGLVLSPVGQLCVSPLDRDVVA
SSGVAVIDCSWAKLDETPFGRMRSPHPRLLPFLVAANPINYGKPCKLSCV
EAIAATLYICGFTEEARWFLGKFSWGHAFLELNDKLLNAYAACKSSDEIV
KVQNEYLEKEQQERDKPRDLRDFYPTSSSSSSSETETEGDDEDTKAKPKN
*

LD46811.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4338-PA 274 CG4338-PA 1..274 27..300 1452 100 Plus

LD46811.pep Sequence

Translation from 78 to 902

> LD46811.pep
MSGRNRGKGKKGGGGPYRNVKANHNCARSFAQQANELASSSSSENESSDS
ESSGDGAQNDLGQPPEFAVAMWDLNHCDPKKCSGRKLARLGLISNLRLGQ
KFPGLVLSPVGQLCVSPLDRDVVASSGVAVIDCSWAKLDETPFGRMRSPH
PRLLPFLVAANPINYGKPCKLSCVEAIAATLYICGFTEEARWFLGKFSWG
HAFLELNDKLLNAYAACKSSDEIVKVQNEYLEKEQQERDKPRDLRDFYPT
SSSSSSSETETEGDDEDTKAKPKN*

LD46811.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11442-PA 268 GF11442-PA 15..245 16..250 1108 88.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16907-PA 274 GG16907-PA 1..273 1..273 1201 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18855-PA 267 GH18855-PA 1..253 1..250 1066 79.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4338-PA 274 CG4338-PA 1..274 1..274 1452 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22926-PA 264 GI22926-PA 1..250 1..250 1099 81.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12540-PA 263 GL12540-PA 15..246 16..250 1063 86 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18120-PA 266 GA18120-PA 15..246 16..250 1061 86 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24214-PA 272 GM24214-PA 1..271 1..271 1220 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19004-PA 202 GD19004-PA 1..201 71..271 1055 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23209-PA 265 GJ23209-PA 1..250 1..250 1105 83.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13794-PA 228 GK13794-PA 1..222 1..232 925 78.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24288-PA 273 GE24288-PA 1..273 1..274 1201 95.3 Plus