Clone LD46837 Report

Search the DGRC for LD46837

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:468
Well:37
Vector:pOT2
Associated Gene/TranscriptCG1344-RA
Protein status:LD46837.pep: gold
Sequenced Size:2171

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1344 2007-09-25 DGC5 pick
CG1344 2008-04-29 Release 5.5 accounting
CG1344 2008-04-29 Picked prior to 5.5
CG1344 2008-08-15 Release 5.9 accounting
CG1344 2008-12-18 5.12 accounting

Clone Sequence Records

LD46837.complete Sequence

2171 bp assembled on 2007-12-04

GenBank Submission: BT031331

> LD46837.complete
CGGCACGAGGCATCTAGAGCTATGGGCAATGAAGGCAGCAAACTAAAAGG
AATACTTGTTGAGGAAAATGCGGTGGAGACTAATCAATTTTGGACAGTTT
ATAACGCTAAGACGCCAGAGACAACCAACGATGAACGTTGCAGCCAGATG
CTCTCCGTATTCGAAGGAAAAGTCTTTGTCAAGGCACATGTATGGTCAAA
TGGAGTGGGCCCGATTGAAAGAGCAATAAAAAACCTGATGGTCTACCGCC
ACCCGTACATCTTAAAATATATAGCTACCTGGGAGAAGTCGGGACGGAAG
TATCTTGCTACAGAGAGAGTCAGACCTCTAGATGAGGTGCTGGCCCAGCA
GACTGACATTGAAGTCTGCCTAGGGCTGCGAACCATTTTATGCGCTCTAA
TATTTTTGGTTGAGAAGGCCCTGGCTCGGCACTTAAATATTAACACGCAG
TCTATTTACGTAACGGAGAGTGGAAGCTGGCGCCTCGCTGGCTTCGAGTA
CGTTTGGAGGGCCACGGATGTCAACAAACAACTGCTCGACTTGGCACATT
CTTTTATAGACTTGACTATTCACGGAGAGAACTTCGAACAATTTTTCTTC
TCCATTTTGTGCGAGAAAGTGCTAAGCAGGAAAGGAACTGATAGTTGTAT
TACTGATAGCACTCCACACGTTCATGAGTTCCGTGAGTATTGCAGCACAC
ACCTAAAGCATCAAAATACAAAGCTAAGGCCAAGACTTTCTGCTATCTTG
CTACATCCATACTTCAACCATGAATTCGTGCTTATACATTCCTTTCTCTT
TGAGTTGCCACTGAAGTCAGTGCACGAGCGCCACAAATTCTTTAGAAGTT
TGATTGATCGATTGCGATATTTCGACGAGGAAGTAGTGGCTTCGCAGCTG
GCATGTGACTTACTCTCTAGAATGGTTCTGCTGGATCCTGCTGCACAAGA
ATTTGTGACTCCGCATATACTCCGTACAAAAGTTACTGATAAAGCACCGG
CATCGCTATTTTCTCCGCAAATCTACGTACAATACTTAATGCCACACATA
CTCAAGATGTTCCGCTTGCGTGATGCACAGATTCGATTAATACTTCTTGA
CTATTTTATGGACTATGTTCGTCTCTTAAGCGATGAGCAACTAGAGAGCG
AAATTCTTCCTCATTTACAGCTTGGTATGAACGATACTAACGACGTCTTG
GTAGGCAAAACACTAAGGTGCATGGCTGATTTAGTTTCCATATTAGGAGC
TAACAAAGTTTTGGGCGGTGATCGTGCACGATGTTTTTCTGATGGCCGTC
CACACGCTGCTGTTTCCAGAGACAGCAACAATCCTTATCCCGAACCGCGG
TCTATTAGTCCTTTAATGAATACTAGATCCTTCGACGTAGAAGACTTTAT
GGTTTCTGGGAGCCCATTGCCACAAGAAAGCAATGCCTCACCTTTATCTA
TTCGCCTTAGCCCGGACGGTGGGGAGGACGAGAAACTTCGGTTAAATTCA
AATGAAAAATCCATAAGTATAAAACATAATATAGACCCCGAGAAGGACTC
GTATATATCTGGCACAGAGCATGAAAGAGTGGCCAACATTGATGAGGAGG
GGACTTGGCTTGATTGGGACAATACAGACCACCTTCAACAGGGCTACCAA
GTGGATCACGCTGTAACCGACTCTGAAACAAACAGTAATTCATTTGCTAG
AGAGATCCAAACTGGCAAATCTTTATCGCCCTCATATCGCACTGGAAAAT
GTAATTTATCAGTTGGAGTAAACGAGACAATATCCCAGACAGAACAGAAA
GTTATCGATGATCTCAGTGAGCTGGACATAAAAGTGCAAACGGTGATTCA
AAGGTCTGAGTTCAACGAATTTGATTTCTTCAAAGATATGGAACCGATCA
TCGAAATCCGGACTAGTACCTGTGAGACACCGGAGCAAATAAGCAGCCGT
TTTGCTGCTGCTGCGTCAGCCGTGAACTGTAATGAGCTGTGTGCCGATCA
GGGTTGGGGTCATGATGAACAGGATGATAAGGACGATATTGTCTGGGGCG
TGACGAATGTATCAACGCTTTAATACAAAATCGAGGTATTTTTTACTGTT
AGCTAAACAATAAAAGCCATAAATGTAATTAAATTGTATCAGGAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

LD46837.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1344-RA 2333 CG1344-RA 132..2268 10..2146 10685 100 Plus
CG1344.a 2770 CG1344.a 132..2268 10..2146 10685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1541347..1543258 232..2143 9560 100 Plus
chr2R 21145070 chr2R 1541073..1541294 10..231 1110 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5653969..5655883 232..2146 9575 100 Plus
2R 25286936 2R 5653695..5653916 10..231 1110 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5655168..5657082 232..2146 9575 100 Plus
2R 25260384 2R 5654894..5655115 10..231 1110 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:14:22 has no hits.

LD46837.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:15:22 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1541070..1541294 5..231 99 -> Plus
chr2R 1541347..1543258 232..2143 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:42 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 1..2052 22..2073 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:08 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 1..2052 22..2073 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:46 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 1..2052 22..2073 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:27 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 1..2052 22..2073 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:08 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 1..2052 22..2073 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:57:57 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 54..2190 5..2143 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:08 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 54..2190 5..2143 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:46 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 17..2153 5..2143 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:27 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 54..2190 5..2143 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:08 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1344-RA 17..2153 5..2143 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:22 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5653692..5653916 5..231 99 -> Plus
2R 5653969..5655880 232..2143 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:22 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5653692..5653916 5..231 99 -> Plus
2R 5653969..5655880 232..2143 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:22 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5653692..5653916 5..231 99 -> Plus
2R 5653969..5655880 232..2143 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:46 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1541197..1541421 5..231 99 -> Plus
arm_2R 1541474..1543385 232..2143 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:16 Download gff for LD46837.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5654891..5655115 5..231 99 -> Plus
2R 5655168..5657079 232..2143 100   Plus

LD46837.hyp Sequence

Translation from 5 to 2072

> LD46837.hyp
TASRAMGNEGSKLKGILVEENAVETNQFWTVYNAKTPETTNDERCSQMLS
VFEGKVFVKAHVWSNGVGPIERAIKNLMVYRHPYILKYIATWEKSGRKYL
ATERVRPLDEVLAQQTDIEVCLGLRTILCALIFLVEKALARHLNINTQSI
YVTESGSWRLAGFEYVWRATDVNKQLLDLAHSFIDLTIHGENFEQFFFSI
LCEKVLSRKGTDSCITDSTPHVHEFREYCSTHLKHQNTKLRPRLSAILLH
PYFNHEFVLIHSFLFELPLKSVHERHKFFRSLIDRLRYFDEEVVASQLAC
DLLSRMVLLDPAAQEFVTPHILRTKVTDKAPASLFSPQIYVQYLMPHILK
MFRLRDAQIRLILLDYFMDYVRLLSDEQLESEILPHLQLGMNDTNDVLVG
KTLRCMADLVSILGANKVLGGDRARCFSDGRPHAAVSRDSNNPYPEPRSI
SPLMNTRSFDVEDFMVSGSPLPQESNASPLSIRLSPDGGEDEKLRLNSNE
KSISIKHNIDPEKDSYISGTEHERVANIDEEGTWLDWDNTDHLQQGYQVD
HAVTDSETNSNSFAREIQTGKSLSPSYRTGKCNLSVGVNETISQTEQKVI
DDLSELDIKVQTVIQRSEFNEFDFFKDMEPIIEIRTSTCETPEQISSRFA
AAASAVNCNELCADQGWGHDEQDDKDDIVWGVTNVSTL*

LD46837.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1344-PB 683 CG1344-PB 1..683 6..688 3569 100 Plus
CG1344-PA 683 CG1344-PA 1..683 6..688 3569 100 Plus

LD46837.pep Sequence

Translation from 21 to 2072

> LD46837.pep
MGNEGSKLKGILVEENAVETNQFWTVYNAKTPETTNDERCSQMLSVFEGK
VFVKAHVWSNGVGPIERAIKNLMVYRHPYILKYIATWEKSGRKYLATERV
RPLDEVLAQQTDIEVCLGLRTILCALIFLVEKALARHLNINTQSIYVTES
GSWRLAGFEYVWRATDVNKQLLDLAHSFIDLTIHGENFEQFFFSILCEKV
LSRKGTDSCITDSTPHVHEFREYCSTHLKHQNTKLRPRLSAILLHPYFNH
EFVLIHSFLFELPLKSVHERHKFFRSLIDRLRYFDEEVVASQLACDLLSR
MVLLDPAAQEFVTPHILRTKVTDKAPASLFSPQIYVQYLMPHILKMFRLR
DAQIRLILLDYFMDYVRLLSDEQLESEILPHLQLGMNDTNDVLVGKTLRC
MADLVSILGANKVLGGDRARCFSDGRPHAAVSRDSNNPYPEPRSISPLMN
TRSFDVEDFMVSGSPLPQESNASPLSIRLSPDGGEDEKLRLNSNEKSISI
KHNIDPEKDSYISGTEHERVANIDEEGTWLDWDNTDHLQQGYQVDHAVTD
SETNSNSFAREIQTGKSLSPSYRTGKCNLSVGVNETISQTEQKVIDDLSE
LDIKVQTVIQRSEFNEFDFFKDMEPIIEIRTSTCETPEQISSRFAAAASA
VNCNELCADQGWGHDEQDDKDDIVWGVTNVSTL*

LD46837.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22736-PA 668 GF22736-PA 1..658 1..669 1870 55.6 Plus
Dana\GF23372-PA 870 GF23372-PA 65..424 68..413 214 23.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23171-PA 679 GG23171-PA 1..679 1..683 3231 88.3 Plus
Dere\GG11691-PA 873 GG11691-PA 65..424 68..413 217 23.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13294-PA 745 GH13294-PA 1..727 1..676 2011 57.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1344-PB 683 CG1344-PB 1..683 1..683 3569 100 Plus
CG1344-PA 683 CG1344-PA 1..683 1..683 3569 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17486-PA 706 GI17486-PA 1..698 1..676 2170 61.9 Plus
Dmoj\GI10423-PA 873 GI10423-PA 65..424 68..413 210 23.5 Plus
Dmoj\GI23050-PA 851 GI23050-PA 45..440 23..382 156 22.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21179-PA 698 GL21179-PA 1..697 1..677 2294 64.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28759-PA 698 GA28759-PA 1..697 1..677 2296 64.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16513-PA 675 GM16513-PA 1..675 1..683 3409 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10379-PA 675 GD10379-PA 1..675 1..683 3434 95.2 Plus
Dsim\GD21461-PA 873 GD21461-PA 65..424 68..413 212 23.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15077-PA 702 GJ15077-PA 1..702 1..681 2201 61.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15338-PA 685 GK15338-PA 1..685 1..678 1943 56.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20508-PA 615 GE20508-PA 1..570 1..570 2588 85.4 Plus
Dyak\GE20508-PA 615 GE20508-PA 554..614 621..682 229 77.4 Plus
Dyak\GE23880-PA 873 GE23880-PA 65..424 68..413 217 23.9 Plus