Clone LD46840 Report

Search the DGRC for LD46840

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:468
Well:40
Vector:pOT2
Associated Gene/TranscriptDak1-RA
Protein status:LD46840.pep: gold
Preliminary Size:1383
Sequenced Size:1232

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6092 2001-01-01 Release 2 assignment
CG6092 2002-06-06 Blastp of sequenced clone
CG6092 2003-01-01 Sim4 clustering to Release 3
Dak1 2008-04-29 Release 5.5 accounting
Dak1 2008-08-15 Release 5.9 accounting
Dak1 2008-12-18 5.12 accounting

Clone Sequence Records

LD46840.complete Sequence

1232 bp (1232 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119622

> LD46840.complete
TGAGGTGTACTGCAGGCGGCATACACATAAACCACGCATTCAATTTGCCT
TCAGTTTGGTTCAGTCGTCAATGTGGCGGGCTTTGGCACGAACGACGTTG
AGAGCAGTAGCCAACGATTGCGGTTCACCAGGAGTCGGTCTCGCACCATC
AGCGCTGACGCAGCACCAATTGCGACATTCCAAGGCCAGCAATAGGTTCA
TCACCACCACCTCCACAGCCCCACCACACAATATCGGAATCATGAGCGTA
GAGAAGCCAAAGATTGTCTTTGTTTTGGGCGGTCCCGGGGCCGGCAAGGG
CACCCAATGCTCCAGGATCGTGGATCGCTTCCAATTCACCCATCTCTCGG
CCGGCGATCTCCTGCGCGAGGAGCGGTCGCGGGAGGGCTCCGAATTCGGT
AACCTCATCGAGGACTACATTCGCAATGGCAAAATTGTGCCCGTCGAGGT
CACGTGTTCGCTGCTGGAGAACGCCATGAAGGCGTCGGGAAAGTCGCGGT
TCCTCATCGACGGCTTCCCACGCAATCAGGATAATCTGGACGGTTGGAAC
CGCCAGATGTCCGAGAAGGTGGACTTCCAGTTTGTCCTCTTCTTCGACTG
CGGCGAGGATGTGTGCGTCAAACGGTGTCTGGGCCGCGGCCAGAGCGGCT
CTGGCCGGACGGACGACAACCTGGACAGCCTGAAGAAGCGCATCTCGACA
TACAACAACGACTCGCTGCCCATCATCAAGTTCTTCGAGGGCGCCGGCCA
GGTGAAACGGATCGATGCCAGTCCGGATGCGGAAGAGGTGTTCGGGGAGG
TGGAAAAGATATTTGTGGCCAGCGGCTTCTAGATTTCCTGTTCATATTCC
GGTTATGTGTGTAGTGCTATCCTTACCTTTCATTTGTACCCTCTAAAAAA
ATACATATATACGCTTGTTAATAGTAATGCATAAGGTACTTTTTCTTCAC
CCCGATAAGATACAAGATACACATGAAGTTTAGTATACCCAATCAAGGAA
AGCGGAGGTACACACACACTTTTTAATATCGAGTAAAAAATGGAGCTAGG
CAAAAGTTATTCTGGAATTATATGTTATCTAAAGCAAATGGATTGAGAAC
TATTTTAAATGTAGGAACGTTAAAGAGCAATAAACAATAAATTAAATCCC
CTGTTCATATTATGACATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD46840.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
Sld5-RC 2141 Sld5-RC 968..2141 1..1174 5870 100 Plus
Dak1-RB 2137 Dak1-RB 968..2137 1..1170 5850 100 Plus
Dak1-RA 1252 Dak1-RA 83..1252 1..1170 5850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21877223..21878392 1170..1 5835 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26054233..26055406 1174..1 5870 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25795064..25796237 1174..1 5870 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:10:52 has no hits.

LD46840.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:11:48 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21877223..21878392 1..1170 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:43 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Dak1-RB 1..762 71..832 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:32 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Dak1-RA 1..762 71..832 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:00:08 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Dak1-RA 1..762 71..832 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:36 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Dak1-RB 1..762 71..832 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:57 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Dak1-RA 1..762 71..832 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:01:39 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Sld5-RC 968..2137 1..1170 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:32 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Dak1-RA 83..1252 1..1170 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:00:08 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Dak1-RA 33..1202 1..1170 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:37 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Sld5-RC 968..2137 1..1170 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:57 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
Dak1-RA 33..1202 1..1170 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:48 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26054237..26055406 1..1170 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:48 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26054237..26055406 1..1170 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:48 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26054237..26055406 1..1170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:00:08 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21879959..21881128 1..1170 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:55:30 Download gff for LD46840.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25795068..25796237 1..1170 100   Minus

LD46840.hyp Sequence

Translation from 0 to 831

> LD46840.hyp
EVYCRRHTHKPRIQFAFSLVQSSMWRALARTTLRAVANDCGSPGVGLAPS
ALTQHQLRHSKASNRFITTTSTAPPHNIGIMSVEKPKIVFVLGGPGAGKG
TQCSRIVDRFQFTHLSAGDLLREERSREGSEFGNLIEDYIRNGKIVPVEV
TCSLLENAMKASGKSRFLIDGFPRNQDNLDGWNRQMSEKVDFQFVLFFDC
GEDVCVKRCLGRGQSGSGRTDDNLDSLKKRISTYNNDSLPIIKFFEGAGQ
VKRIDASPDAEEVFGEVEKIFVASGF*

LD46840.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dak1-PA 253 CG6092-PA 1..253 24..276 1319 100 Plus
Adk1-PA 201 CG17146-PA 6..182 88..267 288 36.6 Plus
Adk1-PB 229 CG17146-PB 34..210 88..267 288 36.6 Plus
Adk2-PA 240 CG3140-PA 14..230 75..271 240 28.9 Plus
CG9541-PC 616 CG9541-PC 327..502 86..270 185 24.3 Plus

LD46840.pep Sequence

Translation from 70 to 831

> LD46840.pep
MWRALARTTLRAVANDCGSPGVGLAPSALTQHQLRHSKASNRFITTTSTA
PPHNIGIMSVEKPKIVFVLGGPGAGKGTQCSRIVDRFQFTHLSAGDLLRE
ERSREGSEFGNLIEDYIRNGKIVPVEVTCSLLENAMKASGKSRFLIDGFP
RNQDNLDGWNRQMSEKVDFQFVLFFDCGEDVCVKRCLGRGQSGSGRTDDN
LDSLKKRISTYNNDSLPIIKFFEGAGQVKRIDASPDAEEVFGEVEKIFVA
SGF*

LD46840.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18220-PA 196 GF18220-PA 1..196 58..253 970 91.8 Plus
Dana\GF24995-PA 223 GF24995-PA 28..204 65..244 278 35.3 Plus
Dana\GF12891-PA 240 GF12891-PA 14..230 52..248 237 28.4 Plus
Dana\GF18267-PA 218 GF18267-PA 10..207 68..245 198 27 Plus
Dana\GF22148-PA 613 GF22148-PA 321..497 63..248 192 26.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12202-PA 196 GG12202-PA 1..196 58..253 1010 96.9 Plus
Dere\GG13846-PA 219 GG13846-PA 25..201 65..244 294 36.6 Plus
Dere\GG22922-PA 240 GG22922-PA 14..230 52..248 240 28.4 Plus
Dere\GG24043-PA 563 GG24043-PA 272..448 63..248 185 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18143-PA 197 GH18143-PA 1..196 58..253 827 82.1 Plus
Dgri\GH15260-PA 222 GH15260-PA 28..204 65..244 295 36.6 Plus
Dgri\GH21708-PA 238 GH21708-PA 22..231 67..249 235 28.4 Plus
Dgri\GH19429-PA 217 GH19429-PA 10..210 68..248 193 25.1 Plus
Dgri\GH25120-PA 972 GH25120-PA 686..862 63..248 183 24.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dak1-PA 253 CG6092-PA 1..253 1..253 1319 100 Plus
Adk1-PA 201 CG17146-PA 6..182 65..244 288 36.6 Plus
Adk1-PB 229 CG17146-PB 34..210 65..244 288 36.6 Plus
Adk2-PA 240 CG3140-PA 14..230 52..248 240 28.9 Plus
CG9541-PC 616 CG9541-PC 327..502 63..247 185 24.3 Plus
CG9541-PD 646 CG9541-PD 357..532 63..247 185 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22905-PA 197 GI22905-PA 1..196 58..253 921 85.7 Plus
Dmoj\GI11969-PA 225 GI11969-PA 25..207 59..244 321 37.6 Plus
Dmoj\GI20701-PA 240 GI20701-PA 22..230 67..248 233 28.6 Plus
Dmoj\GI22633-PA 217 GI22633-PA 10..210 68..248 197 24.6 Plus
Dmoj\GI12001-PA 573 GI12001-PA 283..459 63..248 187 25.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22014-PA 249 GL22014-PA 1..249 1..253 942 74.6 Plus
Dper\GL12997-PA 193 GL12997-PA 7..193 62..248 791 76.5 Plus
Dper\GL25010-PA 225 GL25010-PA 27..207 65..244 292 36.2 Plus
Dper\GL11651-PA 222 GL11651-PA 4..212 67..248 240 29 Plus
Dper\GL12056-PA 217 GL12056-PA 10..187 68..224 183 25.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19345-PA 249 GA19345-PA 1..249 1..253 940 74.6 Plus
Dpse\GA23172-PA 198 GA23172-PA 7..198 62..253 790 74 Plus
Dpse\GA14347-PA 229 GA14347-PA 31..211 65..244 300 37 Plus
Dpse\GA16231-PA 240 GA16231-PA 14..230 52..248 247 28.9 Plus
Dpse\GA19723-PA 216 GA19723-PA 10..210 68..248 194 24.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10200-PA 253 GM10200-PA 1..253 1..253 1299 96.4 Plus
Dsec\GM24672-PA 220 GM24672-PA 25..201 65..244 302 36.8 Plus
Dsec\GM18289-PA 240 GM18289-PA 14..230 52..248 246 29.3 Plus
Dsec\GM16084-PA 240 GM16084-PA 14..230 52..248 246 29.3 Plus
Dsec\GM19270-PA 206 GM19270-PA 6..196 85..248 184 27.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18150-PA 253 GD18150-PA 1..253 1..253 1310 97.2 Plus
Dsim\GD12741-PA 206 GD12741-PA 25..182 65..223 289 37.9 Plus
Dsim\GD11825-PA 240 GD11825-PA 14..230 52..248 246 29.3 Plus
Dsim\GD20690-PA 209 GD20690-PA 9..184 67..228 167 24.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23317-PA 197 GJ23317-PA 1..196 58..253 921 86.2 Plus
Dvir\GJ12193-PA 225 GJ12193-PA 31..211 65..248 324 36.9 Plus
Dvir\GJ20444-PA 240 GJ20444-PA 14..230 52..248 242 28.4 Plus
Dvir\GJ23879-PA 217 GJ23879-PA 10..210 68..248 201 25.6 Plus
Dvir\GJ14119-PA 586 GJ14119-PA 296..472 63..248 194 26.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12802-PA 196 GK12802-PA 1..196 58..253 911 85.7 Plus
Dwil\GK13248-PA 219 GK13248-PA 27..203 65..244 293 36.6 Plus
Dwil\GK21378-PA 240 GK21378-PA 16..230 54..248 241 29.1 Plus
Dwil\GK14788-PA 586 GK14788-PA 279..455 63..248 198 26.7 Plus
Dwil\GK13283-PA 217 GK13283-PA 10..210 68..248 185 23.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10646-PA 196 GE10646-PA 1..196 58..253 1015 97.4 Plus
Dyak\GE20139-PA 225 GE20139-PA 31..207 65..244 294 36.6 Plus
Dyak\GE14359-PA 240 GE14359-PA 14..230 52..248 247 29.3 Plus
Dyak\GE10676-PA 563 GE10676-PA 272..448 63..248 184 25.1 Plus