Clone LD46868 Report

Search the DGRC for LD46868

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:468
Well:68
Vector:pOT2
Associated Gene/Transcripttun-RA
Protein status:LD46868.pep: gold
Preliminary Size:2100
Sequenced Size:2047

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8253 2001-09-19 Blastp of sequenced clone
CG8253 2003-01-01 Sim4 clustering to Release 3
tun 2008-04-29 Release 5.5 accounting
tun 2008-08-15 Release 5.9 accounting
tun 2008-12-18 5.12 accounting

Clone Sequence Records

LD46868.complete Sequence

2047 bp (2047 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060439

> LD46868.complete
CGGGAACGCGTACACAACACAAGGAGCGGAGTGTGCCGAGCAAAAGAAAA
AAAGAAAGAAAAAGAAGCGGAAAAGCCACCACCAGAGCGTGGAAGGGAAA
AAAACGAAAAGCTGATAGAGGCGCCCACGAAAAACGCACGCAGCCTGCAA
CATCCAAGGATTCCGGTGCCCAGACCAACGTAGTGTTCCGCCGTGATACA
AGCTCCACGGGTCGCTGAGTGCGTGTTGCCCCAGGCTCAGTCACCTGGTC
AGGCCGCCCCATCCTCGCCCGCTGCAGTGCAACAGAAAAATCTGCGGGGG
ATGAGCGCGTTTGTTTTTGGTCAGGTGTGCGATCCCGTAACGAGTGAACA
GGAGCTGCAAGGCAGCAGGCTGGGATAAAAGCTCCAGCATCCTTAGCTCC
TTGGCTCCTTAGCATAATTTAATTCGCAAAAATCGAAACGAAACCAAACG
AAACGAAAGCGAGAAATCGGCTCCTTTGCGAGAGAGAGCCCCCAGTGTAT
GTGTATGTGTATGTGGCGGTGTGTGCGTGCCCGTGTGCCAGTGTGTGCGT
GAGCAGCATCCTGGAAGCCAGAAAAAGACAGGAGAAATAACAAAAATATA
AAAACATAGCAGAGGGGCCATCATCCGCATCGCAGCCTCCCTGGGAATGG
AGGAATGTCGCTGAGCAGGTGCCAGTGCGACGAGCAGGATCGGAATAAGG
ATTAGCCAGCGTCCAGCATCCTCCGATGCCACCGCATAGACATAGATACA
GATTACAGATACGGATACACACACCCTGCTTTTGTCCAGGCAGCGGCGCA
TAATGCAGTGATAATATAAACCAGCTCCTCTCGTGTCTCGTGCAATCTCC
CAGTCCCCAGTGACAATTAGCTCCATCTCCGTCTCCATATCCATATCCTC
CACGGCAAATCAACCCACAGGTCCTGGCTCAAGGATACCCGCACCCACAG
CAACAGCCACAATAGCAACACAGGCGACCAGCATCGCAGCATCGCAGATC
CCGGAGCGCATCAAGATGACCACGGACTTCCTCTTCCCTAAAATATCGGA
CTGCTCCTACGTGTCCTGTTACTGCGAGGAGAACGTGTGGAAGCTCTGCG
AGCAGGTGAAGCGGACGCGGCCGGAGGAGCTGTCCAAGTGCTACGCCGTC
TTCGTTTCCAACGAGGGTCGCACCGTGCCCCTGTGGCGCCAGAAAGCAGG
ACGCGGCGACGATCAAGTTGTGATATGGGACTACCACGTCTTCTTCATAC
ACAATCCCTTGCTGAATCGCTGTTTGGTGTTCGATCTGGACACCACACTG
CCCTTTCCCACATATTTTCACAAGTACGTGACGGAGACGTTCCGCTCCGA
TCTGGCCCTGCGTCCGGAGCACCACAGATTCTTTAGAGTCATACCCGCAG
ACACATATCTCATTGAGTTCTCGTCGGATCGGCGTCACATGCGTCGGCCG
GATGGCAGTTGGATCAAGCCACCGCCCTCCTATCCACCTATACTCTCCAA
TTCGAATATGCACTGTCTAGGAGACTTTATCTGCATGAGTGCAGGAAAAG
GTCCAGGATCGGTCTACAGCCTGTCGGAGTTCGTGCAAAACTTCTACAAA
TCGCCACATGTGATGGCGCAGAACAACAAGTAGATGGAGGGCCAGGGGAT
CTAGAATGCCGAATCGTGCATCCGAAGCATCCAACAGCCCACAGATGCAG
AACGCATCCAGCAACTCAACCACATCCAAATGCAAATACAAATCCGTATC
GAAATCGTTTTGTCGTTGTCGTTACCAGACAGTTAATTACCAATTGCATA
CATATACATACATACATATACACGCGAACATATAAATATATTTATGATAA
TGTATTTTTGTATTCAGGTTAACAGAGATCAAGTGCAGAAGACGGTTAAA
ACGCTGGCGCCACGCAGCTCTTGGCGTTCATATGCATTAAACTTCAATTC
TAAAGAAATTATAAATCTAATTATACATTTTTTATTGTACGTATTGTATT
GTATTTTATAAAGCAACCACCACACATAAAAAAAAAAAAAAAAAAAA

LD46868.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
tun.a 2398 tun.a 129..2156 1..2028 10140 100 Plus
tun.b 3182 tun.b 129..2156 1..2028 10140 100 Plus
tun.e 2588 tun.e 129..2156 1..2028 10140 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11735855..11736928 1..1074 5205 99 Plus
chr2R 21145070 chr2R 11740314..11740838 1503..2027 2610 99.8 Plus
chr2R 21145070 chr2R 11739636..11739791 1074..1229 750 98.7 Plus
chr2R 21145070 chr2R 11739919..11740068 1228..1377 750 100 Plus
chr2R 21145070 chr2R 11740127..11740255 1374..1502 645 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15848606..15849679 1..1074 5370 100 Plus
2R 25286936 2R 15853065..15853590 1503..2028 2630 100 Plus
2R 25286936 2R 15852387..15852542 1074..1229 780 100 Plus
2R 25286936 2R 15852670..15852819 1228..1377 750 100 Plus
2R 25286936 2R 15852878..15853006 1374..1502 645 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15849805..15850878 1..1074 5370 100 Plus
2R 25260384 2R 15854264..15854789 1503..2028 2630 100 Plus
2R 25260384 2R 15853586..15853741 1074..1229 780 100 Plus
2R 25260384 2R 15853869..15854018 1228..1377 750 100 Plus
2R 25260384 2R 15854077..15854205 1374..1502 645 100 Plus
Blast to na_te.dros performed 2019-03-16 11:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 689..764 2010..1936 116 64.9 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 3880..3926 2000..1955 115 74.5 Minus

LD46868.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:10:18 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11736406..11736928 552..1074 98 -> Plus
chr2R 11739637..11739790 1075..1228 98 -> Plus
chr2R 11739920..11740068 1229..1377 100 -> Plus
chr2R 11740131..11740255 1378..1502 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:47 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RA 1..618 1016..1633 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:49 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RA 1..618 1016..1633 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:01:58 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RD 1..618 1016..1633 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:07 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RA 1..618 1016..1633 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:50 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RD 1..618 1016..1633 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:44 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RA 1..2025 1..2025 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:49 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RA 1..2025 1..2025 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:01:58 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RD 1048..3074 1..2027 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:08 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RA 1..2025 1..2025 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:50 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
tun-RD 1048..3074 1..2027 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:18 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15852671..15852819 1229..1377 100 -> Plus
2R 15852882..15853006 1378..1502 100 -> Plus
2R 15848606..15849679 1..1074 100 -> Plus
2R 15852388..15852541 1075..1228 100 -> Plus
2R 15853065..15853589 1503..2027 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:18 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15852671..15852819 1229..1377 100 -> Plus
2R 15852882..15853006 1378..1502 100 -> Plus
2R 15848606..15849679 1..1074 100 -> Plus
2R 15852388..15852541 1075..1228 100 -> Plus
2R 15853065..15853589 1503..2027 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:18 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15852671..15852819 1229..1377 100 -> Plus
2R 15852882..15853006 1378..1502 100 -> Plus
2R 15848606..15849679 1..1074 100 -> Plus
2R 15852388..15852541 1075..1228 100 -> Plus
2R 15853065..15853589 1503..2027 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:01:58 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11740176..11740324 1229..1377 100 -> Plus
arm_2R 11740387..11740511 1378..1502 100 -> Plus
arm_2R 11740570..11741094 1503..2027 100   Plus
arm_2R 11736111..11737184 1..1074 100 -> Plus
arm_2R 11739893..11740046 1075..1228 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:29 Download gff for LD46868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15849805..15850878 1..1074 100 -> Plus
2R 15853587..15853740 1075..1228 100 -> Plus
2R 15853870..15854018 1229..1377 100 -> Plus
2R 15854081..15854205 1378..1502 100 -> Plus
2R 15854264..15854788 1503..2027 100   Plus

LD46868.pep Sequence

Translation from 1015 to 1632

> LD46868.pep
MTTDFLFPKISDCSYVSCYCEENVWKLCEQVKRTRPEELSKCYAVFVSNE
GRTVPLWRQKAGRGDDQVVIWDYHVFFIHNPLLNRCLVFDLDTTLPFPTY
FHKYVTETFRSDLALRPEHHRFFRVIPADTYLIEFSSDRRHMRRPDGSWI
KPPPSYPPILSNSNMHCLGDFICMSAGKGPGSVYSLSEFVQNFYKSPHVM
AQNNK*

LD46868.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11500-PA 205 GF11500-PA 1..205 1..205 1076 96.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20549-PA 205 GG20549-PA 1..205 1..205 1105 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21323-PA 205 GH21323-PA 1..205 1..205 1064 95.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
tun-PC 205 CG8253-PC 1..205 1..205 1140 100 Plus
tun-PB 205 CG8253-PB 1..205 1..205 1140 100 Plus
tun-PD 205 CG8253-PD 1..205 1..205 1140 100 Plus
tun-PA 205 CG8253-PA 1..205 1..205 1140 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19755-PA 205 GI19755-PA 1..205 1..205 1063 94.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11768-PA 532 GL11768-PA 1..205 1..205 1069 93.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20933-PA 205 GA20933-PA 1..205 1..205 1051 93.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21641-PA 205 GM21641-PA 1..205 1..205 1105 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11140-PA 205 GD11140-PA 1..205 1..205 1105 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18123-PA 205 GJ18123-PA 1..205 1..205 1071 95.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21898-PA 205 GK21898-PA 1..205 1..205 1059 94.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11735-PA 205 GE11735-PA 1..205 1..205 1105 99 Plus

LD46868.hyp Sequence

Translation from 1015 to 1632

> LD46868.hyp
MTTDFLFPKISDCSYVSCYCEENVWKLCEQVKRTRPEELSKCYAVFVSNE
GRTVPLWRQKAGRGDDQVVIWDYHVFFIHNPLLNRCLVFDLDTTLPFPTY
FHKYVTETFRSDLALRPEHHRFFRVIPADTYLIEFSSDRRHMRRPDGSWI
KPPPSYPPILSNSNMHCLGDFICMSAGKGPGSVYSLSEFVQNFYKSPHVM
AQNNK*

LD46868.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
tun-PC 205 CG8253-PC 1..205 1..205 1140 100 Plus
tun-PB 205 CG8253-PB 1..205 1..205 1140 100 Plus
tun-PD 205 CG8253-PD 1..205 1..205 1140 100 Plus
tun-PA 205 CG8253-PA 1..205 1..205 1140 100 Plus