Clone LD46870 Report

Search the DGRC for LD46870

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:468
Well:70
Vector:pOT2
Associated Gene/TranscriptCG14641-RA
Protein status:LD46870.pep: gold
Preliminary Size:1723
Sequenced Size:1590

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14641 2001-01-01 Release 2 assignment
CG14641 2001-10-10 Blastp of sequenced clone
CG14641 2008-04-29 Release 5.5 accounting
CG14641 2008-08-15 Release 5.9 accounting
CG14641 2008-12-18 5.12 accounting

Clone Sequence Records

LD46870.complete Sequence

1590 bp (1590 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061516

> LD46870.complete
CACACCACCATTTTCGACAAGTAGAAAGCGAATGAGCATTGTCTAAATTT
AGCTCGGATTTTAAGTGCAAGGTACATAAGTGCCGCTGCTATGTCTATGT
CAAAAACGACTAACACCTATAACCGGCAGAACTGGGAAGATGCTGAATTC
CCAATTCTGTGCCAAACTTGCCTTGGCGACAATCCGTACGTGCGGATGAT
TAAAGAGCGGTTCGGCAAGGAATGCAAGATATGCACGCGTCCATTCACAA
TATTTCGATGGTGTCCTGGTGCTCGTATGCGCTTCAAAAAGACGGAGATA
TGTCAAACGTGTGCGCGCCTGAAGAACGTGTGTCAGACCTGCCTCTTGGA
CCTGGAGTACGGACTGCCGATTCAAGTACGAGATGCGGCGCTCAAAGTGG
CTGACAATATGCCACAAAGCGACGTTAACAAGGAATACTACATCCAAAAC
ATAGACGCCCAGCTGCAGGACGGAGATGGCACGGAGGCGGCAGGAGCTGT
CGGTCGATCCCTCGCCGCCAACGAGATGTTGTCCAAGCTTGCGCGCACAG
CACCCTATTACAAAAGAAATCGGCCGCACATCTGCTCCTTTTGGGTTAAG
GGCGAGTGCAAGCGTGGAGAGGAGTGCCCATACCGCCACGACAAGCCCAA
CGAGCCGGACGATCCGCTATGTGAGCAAAACATCAAGGACAGGTACTACG
GACGCAACGATCCTGTGGCCGAGAAGATCATGAAGCGTGCAGCCTCGCTT
CCCACACTCGAGCCGCCGGAGGACCGCAACATCACAACTCTCTATGTGGG
GAACCTTCCTGAAGAAATCACGGAACCCGAGCTGCGAGATCAGTTCTACC
AGTTCGGCGAAATTCGATCAATTGCGCTGGTGCCACGCCAGCAGTGCGCT
TTTGTGCAATACACCAAAAGAAACGCTGCCGAGCTGGCTGCTGAGCGGAC
CTTTAATAAACTGGTGATCCAGGGCCGGAAGGTGAGCATTAAGTGGGCTC
ACTCTCAGGCAAAGCAGGGCACCGCTGCAAAGACAGACAGACGCTTCGAC
TTGGCCGGCATTCCACCGCCTAGCGCGAAGCCCAACGACTACTTCAATCT
TCGCCAAGAGCAAATCAATGTCATGCCCGCCGGCATGAAGCTGCATCAGT
TGCCATCAAATCTAGTTCCGGCGTCGGCTTACCAAATGTATGGTCAGCCT
ACTTATGCAGCTCCCTACGGAAACGCCACTTCCACAGCCCTTTCTTCCTC
GGGTGTCAATTTGGATTCCATATCGATTCCTCCGCCACCGGGTCAAGTAC
CGTATCCAAGTCAGGACGCCAGTCGGATGGGAGCTGTTAAAAAGTAGGAA
AACCCTGTGGTCTACAATGGTTCCAATTCAATAAATCATTTTTATAAAAT
TAAATACAAACTTTTTAAAGTGGTCAGTTCCATAAAAATGACTTAATATT
AATAGAATTTATCCGTATGGACGAAATTGTTTTCGATTCGAATTGTTAAG
AAAAAACACCAAACAATTAGAGAGGAGAAGATAATAATAAATGATTTAAA
CTCTAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAA

LD46870.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14641-RA 1603 CG14641-RA 24..1594 1..1571 7840 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 56484..58054 1571..1 7840 99.9 Minus
chr2RHet 3288813 chr2RHet 1724429..1724468 1570..1531 200 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4230762..4232332 1571..1 7840 99.9 Minus
2R 25286936 2R 2949384..2949424 1571..1531 205 100 Minus
2L 23513712 2L 22567139..22567190 1582..1531 200 92.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 3971593..3973163 1571..1 7840 99.9 Minus
2R 25260384 2R 2949384..2949424 1571..1531 205 100 Minus
2L 23513712 2L 22567139..22567190 1582..1531 200 92.3 Minus
Blast to na_te.dros performed 2019-03-16 02:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 135..197 1511..1571 139 71.4 Plus
Tabor 7345 Tabor TABOR 7345bp 6419..6493 1491..1570 137 66.2 Plus
412 7567 412 412 7567bp 1165..1215 1521..1571 120 70.6 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 1617..1671 1496..1550 113 67.3 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9499..9553 1496..1550 113 67.3 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 4127..4231 1373..1478 113 60.2 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 3833..3931 1378..1478 113 59.8 Plus
Stalker 7256 Stalker STALKER 7256bp 3727..3825 1378..1478 113 59.8 Plus

LD46870.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:45:24 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 56501..58054 1..1554 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:48 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 1..1257 91..1347 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:00 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 1..1257 91..1347 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:20 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 1..1257 91..1347 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:49 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 1..1257 91..1347 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:19:34 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 1..1257 91..1347 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:12 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 24..1577 1..1554 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:00 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 24..1577 1..1554 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:20 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 11..1564 1..1554 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:50 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 24..1577 1..1554 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:19:34 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
CG14641-RA 11..1564 1..1554 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:24 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4230779..4232332 1..1554 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:24 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4230779..4232332 1..1554 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:24 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4230779..4232332 1..1554 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:20 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 56501..58054 1..1554 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:01 Download gff for LD46870.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3971610..3973163 1..1554 100   Minus

LD46870.pep Sequence

Translation from 90 to 1346

> LD46870.pep
MSMSKTTNTYNRQNWEDAEFPILCQTCLGDNPYVRMIKERFGKECKICTR
PFTIFRWCPGARMRFKKTEICQTCARLKNVCQTCLLDLEYGLPIQVRDAA
LKVADNMPQSDVNKEYYIQNIDAQLQDGDGTEAAGAVGRSLAANEMLSKL
ARTAPYYKRNRPHICSFWVKGECKRGEECPYRHDKPNEPDDPLCEQNIKD
RYYGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPELRD
QFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTFNKLVIQGRKVSI
KWAHSQAKQGTAAKTDRRFDLAGIPPPSAKPNDYFNLRQEQINVMPAGMK
LHQLPSNLVPASAYQMYGQPTYAAPYGNATSTALSSSGVNLDSISIPPPP
GQVPYPSQDASRMGAVKK*

LD46870.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17279-PA 418 GF17279-PA 1..418 1..418 2213 97.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11763-PA 418 GG11763-PA 1..418 1..418 2230 98.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21879-PA 423 GH21879-PA 1..423 1..418 2119 92.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14641-PA 418 CG14641-PA 1..418 1..418 2240 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21935-PA 428 GI21935-PA 1..428 1..418 2085 92.6 Plus
Dmoj\GI14756-PA 325 GI14756-PA 1..324 1..369 959 52.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12337-PA 422 GL12337-PA 1..422 1..418 2189 95.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13140-PA 422 GA13140-PA 1..422 1..418 2189 95.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10722-PA 418 GM10722-PA 1..418 1..418 2246 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19696-PA 418 GD19696-PA 1..418 1..418 2246 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14294-PA 428 GJ14294-PA 1..428 1..418 2039 91.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11018-PA 419 GK11018-PA 1..419 1..418 2118 94.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25369-PA 418 GE25369-PA 1..418 1..418 2216 97.8 Plus

LD46870.hyp Sequence

Translation from 90 to 1346

> LD46870.hyp
MSMSKTTNTYNRQNWEDAEFPILCQTCLGDNPYVRMIKERFGKECKICTR
PFTIFRWCPGARMRFKKTEICQTCARLKNVCQTCLLDLEYGLPIQVRDAA
LKVADNMPQSDVNKEYYIQNIDAQLQDGDGTEAAGAVGRSLAANEMLSKL
ARTAPYYKRNRPHICSFWVKGECKRGEECPYRHDKPNEPDDPLCEQNIKD
RYYGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPELRD
QFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTFNKLVIQGRKVSI
KWAHSQAKQGTAAKTDRRFDLAGIPPPSAKPNDYFNLRQEQINVMPAGMK
LHQLPSNLVPASAYQMYGQPTYAAPYGNATSTALSSSGVNLDSISIPPPP
GQVPYPSQDASRMGAVKK*

LD46870.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14641-PA 418 CG14641-PA 1..418 1..418 2240 100 Plus