Clone LD46912 Report

Search the DGRC for LD46912

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:469
Well:12
Vector:pOT2
Associated Gene/TranscriptCG7810-RA
Protein status:LD46912.pep: gold
Preliminary Size:1390
Sequenced Size:1282

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7810 2001-01-01 Release 2 assignment
CG7810 2002-06-06 Blastp of sequenced clone
CG7810 2003-01-01 Sim4 clustering to Release 3
CG7810 2008-04-29 Release 5.5 accounting
CG7810 2008-08-15 Release 5.9 accounting
CG7810 2008-12-18 5.12 accounting

Clone Sequence Records

LD46912.complete Sequence

1282 bp (1282 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119623

> LD46912.complete
ATGACAACTGGAAGCGATGCTGACGGGGATGGTGACCACCAGGGCAACAA
TGACATCGTCCCAAATCCAGAACATCCTCCGGAGATAATAGACATCTTCA
AATCCTTGGCCGAAAACAATCAAATCGTCTTTAAGTCGCAGCAAATTGAT
GATCCGGAAATTCCGGTCGAAGAGAAGCAACAAATAGCACGAGATGCCTT
CGATAAGAACCGTGAGAACTTTCTCATCCGATTTGGAGGCTTCCTGAATG
TAAGACAACTGGGTTCCTTCCAGGAACTGGCTGTCAAGGAACCCATTAAA
GCAGATGAAAATCTGGAGGAGATGTGCCTGCTGCTAGAGGATTTTAGGAG
GAAACTCAACACTCGTGCGGTATCCATTAAAAACCGAAGATACCATGCCA
TGCAGCAGCTCCTTGACAAGGGAGAATACTTTAGCGAACACGAGATGATG
CAAAGGGCGCCGGATCTCTACCAGGAGCTAGTGGGTCAGTACCTAACGGA
GGCGGAAAAGAAGGCTCGGGATAGTTACGATGTTCGGAATACTAGCTTCT
CAGGAATACTAATGCATACGTTGGAGAAAAAGCAAAGAGATGAATTACTA
GAGGAAACGCAGCAGGAAGGAAAGCAGAGCGTGCAGGTCACAAGTGAATC
CAATCCTCAGGCAGACTGTGACGTTCCTGTCGCTTGCCGAAAGCAGTGGG
GTGGATTTGAAGATGATGAACCAGTGGCCTGTTCAACGAGTCGAAATGCG
GAAGTCCGAGCTCCAATGAATACAACTATGATCTCCACACCGGAGTTCTA
TAATCCTGGAGAGCGAGAACTACTACGCAATGAGTTCTTGAGTATGATGA
AGGAACGCTTTCTTAGTGGCGAAGACAAGGATTTTGATTATAAGGCCGTA
GATGATAACACTTTGCTGGATGATCTGAAGCAAATTGAGCAGGATGAAGA
AGATGCCTACTTTGAGGATAGCGAGGACGAGGAGGAATTGGAGGAGCATG
CTGCGGATGAGAATGCTATATCTAGCGAAGATGACTTGGATATCTACATG
AGGCATCTAAGCAATCATCACAGTCTCCAGAATAGTCACGGATAATAAAT
GAAAGCTGCTGGTCGCTCGGCATCCAAAGAAAACCCTGGAAATCGATAGG
ATACTCAGCATTCTGCAGCAATAGACTTTAATGTTAATCTTATTCTTAGC
CTTAAAAACTTTTGATCTTAGACACTAGAATACACGCAGTTGTTGAGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD46912.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-RA 1276 CG7810-RA 22..1274 1..1253 6265 100 Plus
CG7810.a 1283 CG7810.a 302..1281 274..1253 4900 100 Plus
CG7810.a 1283 CG7810.a 91..302 1..212 1060 100 Plus
CG7818-RA 1532 CG7818-RA 1417..1532 1253..1138 580 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8308804..8310051 1248..1 6045 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8309871..8311123 1253..1 6265 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8309871..8311123 1253..1 6265 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:10:12 has no hits.

LD46912.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:10:57 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8308804..8310051 1..1248 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:49 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 1..1095 1..1095 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:12 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 1..1095 1..1095 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:11:37 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 1..1095 1..1095 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:27 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 1..1095 1..1095 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:57 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 1..1095 1..1095 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:59:50 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 22..1269 1..1248 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:12 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 22..1269 1..1248 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:37 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 73..1320 1..1248 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:27 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 22..1269 1..1248 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:57 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
CG7810-RA 73..1320 1..1248 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:10:57 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8309876..8311123 1..1248 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:10:57 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8309876..8311123 1..1248 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:10:57 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8309876..8311123 1..1248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:37 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8309876..8311123 1..1248 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:07 Download gff for LD46912.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8309876..8311123 1..1248 100   Minus

LD46912.pep Sequence

Translation from 0 to 1094

> LD46912.pep
MTTGSDADGDGDHQGNNDIVPNPEHPPEIIDIFKSLAENNQIVFKSQQID
DPEIPVEEKQQIARDAFDKNRENFLIRFGGFLNVRQLGSFQELAVKEPIK
ADENLEEMCLLLEDFRRKLNTRAVSIKNRRYHAMQQLLDKGEYFSEHEMM
QRAPDLYQELVGQYLTEAEKKARDSYDVRNTSFSGILMHTLEKKQRDELL
EETQQEGKQSVQVTSESNPQADCDVPVACRKQWGGFEDDEPVACSTSRNA
EVRAPMNTTMISTPEFYNPGERELLRNEFLSMMKERFLSGEDKDFDYKAV
DDNTLLDDLKQIEQDEEDAYFEDSEDEEELEEHAADENAISSEDDLDIYM
RHLSNHHSLQNSHG*

LD46912.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15265-PA 360 GF15265-PA 1..360 1..361 1334 73.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23456-PA 363 GG23456-PA 1..362 1..363 1707 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10177-PA 358 GH10177-PA 1..358 1..361 1152 62.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-PA 364 CG7810-PA 1..364 1..364 1902 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14237-PA 351 GI14237-PA 17..351 24..361 1177 67.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19383-PA 365 GL19383-PA 1..363 1..360 1336 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20602-PA 365 GA20602-PA 1..363 1..360 1327 71 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13067-PA 364 GM13067-PA 1..364 1..364 1768 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22421-PA 364 GD22421-PA 1..364 1..364 1779 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20547-PA 354 GJ20547-PA 17..354 24..361 1215 68.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23819-PA 355 GK23819-PA 1..353 1..360 1122 62.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11055-PA 364 GE11055-PA 1..364 1..364 1757 92.6 Plus

LD46912.hyp Sequence

Translation from 1 to 1094

> LD46912.hyp
MTTGSDADGDGDHQGNNDIVPNPEHPPEIIDIFKSLAENNQIVFKSQQID
DPEIPVEEKQQIARDAFDKNRENFLIRFGGFLNVRQLGSFQELAVKEPIK
ADENLEEMCLLLEDFRRKLNTRAVSIKNRRYHAMQQLLDKGEYFSEHEMM
QRAPDLYQELVGQYLTEAEKKARDSYDVRNTSFSGILMHTLEKKQRDELL
EETQQEGKQSVQVTSESNPQADCDVPVACRKQWGGFEDDEPVACSTSRNA
EVRAPMNTTMISTPEFYNPGERELLRNEFLSMMKERFLSGEDKDFDYKAV
DDNTLLDDLKQIEQDEEDAYFEDSEDEEELEEHAADENAISSEDDLDIYM
RHLSNHHSLQNSHG*

LD46912.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7810-PA 364 CG7810-PA 1..364 1..364 1902 100 Plus