Clone LD46938 Report

Search the DGRC for LD46938

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:469
Well:38
Vector:pOT2
Associated Gene/TranscriptCG4813-RA
Protein status:LD46938.pep: gold
Preliminary Size:2088
Sequenced Size:1518

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4813 2001-01-01 Release 2 assignment
CG4813 2001-07-04 Blastp of sequenced clone
CG4813 2003-01-01 Sim4 clustering to Release 3
CG4813 2008-04-29 Release 5.5 accounting
CG4813 2008-08-15 Release 5.9 accounting
CG4813 2008-12-18 5.12 accounting

Clone Sequence Records

LD46938.complete Sequence

1518 bp (1518 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052004

> LD46938.complete
AAGAAATCGGCGTCGCGTGGCTTGGACAGAGATTATCGAACAAAACAAAA
TCCGACTACAGAATCTTTTAACTTCGTTTACCCTTAAGAGTCCGCGGTGG
ATCCGAGGAATCGATGGCTACGGACACGGTGTCCAACGGCGAGAACTTCG
CCCAGCACTTGAGCAGAAACAGCGACGACGACGTGATCTGTCCCACATGC
GACGTGAAGATCAAGCGCAGTCAGGTGGCCGATCACTGCCAAGTGGAGAT
GGAGCGATTGCACAATCCCATTAGCGCTGTCACTCCACCGACCCCAACTA
GCGGAGCAACCGCGTCCGAGGAATCCGGTTCGGTATCGGGGGGCAGACAA
CCGTGGAGCGTGTTCCAGCGGGTGCAGCGCAATCGGCAGGCCCGTCAGCG
CCAGCGCACCAGGAAGCGTCCGGCTTCTCCTGCCCCACCAGCAACTGTAA
ATCCTACGGTAGCAGCTGCTCCTCCTCCAGCTGCAGCAACTCCGTCCGTA
GCTGCTGCCGAATCGAGCCAACCCACCTGTCCCGTGTGCAACCACAACTT
TCCGCAGTCCAACATCCAAGAGCATGTTAATCATTGCCTGCGCCAGAGCC
GCCGCAATGGTCAGGCCAATGGTGAGCGGCATTCGAGTGAGGACTCGGAG
GACAGCGAGGAATATGAAGAGTACGAGTGGGCGGGACAGAAGCGCATTCG
CGTCTCCACTCTCGTGCAAGGAGGCTATTCCGCCCTGGGCCTGGGCCAGA
GAATCAAATACAATGGCAGTCAGCAGGCGCAGGACGACGAGGACGAAGAT
CTCAACGTGGACGAGGATGACACTCACATCTATGGTCCTACGCAGTATGG
CGAGGGCGATGTGATCCCACTGGTCAACGAGGACACAGAGGGAAATGTTT
CCGAGGCGGATGTTACCAGCTACGTGCGCCGACTTATCTCCTCCAGCGAT
GGGCCCAAGCCAAACCATTCCAGCGAAGCCACCGAGCAAGAGCCTGCCAG
CACAAGCAACGTGGAGGCTCCACCAGCCAGCGAGGAGCCGTCTACGTCGC
GGTCCACGCGATCCACCTCCCAAAACCAGCAGCAGATCATCGAATCGCTG
AAGGCCAAGCTGCGGCTCTACGAAAAGCAGGCGCAGGGCAAGTACAAGTG
CCTGATCTGCATCGACGACTACAAGAATCCCGCCATCTCCGTGTCCTGCT
GGCACGTCCACTGCGAGCAGTGTTGGTTGCAGACGCTCGGCGCGCGAAAG
CTGTGCCCGCAGTGCAACTCGATTACCACGCCGAAGGACCTGCGACGAAT
CTACCTGTAGACGTCCATCACAGACTTGTTATCCCCGCTGCCAAATTGCT
TGCGCCATAAAACAGGCTTTGCATCCCGACGCAGCTTTAGATGATAATCC
CCTATACATATTATTTATATAGATTACAAATACCAATTATACTACGTGAC
ATTACAATAAGCCTACCATGTAACTATTGCAATAAACCGCAGAAAACATA
AAAAAAAAAAAAAAAAAA

LD46938.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4813-RA 2242 CG4813-RA 519..2019 1..1501 7505 100 Plus
nc_18450.a 184 nc_18450.a 1..119 200..82 595 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18548365..18549863 1499..1 7465 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22724882..22726382 1501..1 7505 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22465713..22467213 1501..1 7505 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:41:21 has no hits.

LD46938.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:42:13 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18548365..18549863 1..1499 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:51 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 1..1197 114..1310 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:15 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 1..1197 114..1310 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:14 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 1..1197 114..1310 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:37 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 1..1197 114..1310 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:39:59 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 1..1197 114..1310 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:08:54 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 519..2017 1..1499 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:15 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 1..1499 1..1499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:14 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 1..1499 1..1499 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:38 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 519..2017 1..1499 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:39:59 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 33..1531 1..1499 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:42:13 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22724884..22726382 1..1499 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:42:13 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22724884..22726382 1..1499 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:42:13 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22724884..22726382 1..1499 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:14 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18550606..18552104 1..1499 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:32 Download gff for LD46938.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22465715..22467213 1..1499 100   Minus

LD46938.pep Sequence

Translation from 113 to 1309

> LD46938.pep
MATDTVSNGENFAQHLSRNSDDDVICPTCDVKIKRSQVADHCQVEMERLH
NPISAVTPPTPTSGATASEESGSVSGGRQPWSVFQRVQRNRQARQRQRTR
KRPASPAPPATVNPTVAAAPPPAAATPSVAAAESSQPTCPVCNHNFPQSN
IQEHVNHCLRQSRRNGQANGERHSSEDSEDSEEYEEYEWAGQKRIRVSTL
VQGGYSALGLGQRIKYNGSQQAQDDEDEDLNVDEDDTHIYGPTQYGEGDV
IPLVNEDTEGNVSEADVTSYVRRLISSSDGPKPNHSSEATEQEPASTSNV
EAPPASEEPSTSRSTRSTSQNQQQIIESLKAKLRLYEKQAQGKYKCLICI
DDYKNPAISVSCWHVHCEQCWLQTLGARKLCPQCNSITTPKDLRRIYL*

LD46938.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18292-PA 394 GF18292-PA 1..394 1..398 1349 79.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12490-PA 402 GG12490-PA 1..402 1..398 1587 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18504-PA 402 GH18504-PA 1..402 1..398 993 66.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4813-PA 398 CG4813-PA 1..398 1..398 2111 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24349-PA 402 GI24349-PA 1..402 1..398 993 64.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23780-PA 383 GL23780-PA 1..383 1..398 1219 69.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18450-PA 383 GA18450-PA 1..383 1..398 1218 69.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23622-PA 396 GM23622-PA 1..396 1..398 2038 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18432-PA 397 GD18432-PA 1..397 1..398 2051 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24360-PA 404 GJ24360-PA 1..404 1..398 988 65.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11468-PA 396 GK11468-PA 1..396 1..398 1202 67.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24010-PA 400 GE24010-PA 1..400 1..398 1515 91.5 Plus

LD46938.hyp Sequence

Translation from 113 to 1309

> LD46938.hyp
MATDTVSNGENFAQHLSRNSDDDVICPTCDVKIKRSQVADHCQVEMERLH
NPISAVTPPTPTSGATASEESGSVSGGRQPWSVFQRVQRNRQARQRQRTR
KRPASPAPPATVNPTVAAAPPPAAATPSVAAAESSQPTCPVCNHNFPQSN
IQEHVNHCLRQSRRNGQANGERHSSEDSEDSEEYEEYEWAGQKRIRVSTL
VQGGYSALGLGQRIKYNGSQQAQDDEDEDLNVDEDDTHIYGPTQYGEGDV
IPLVNEDTEGNVSEADVTSYVRRLISSSDGPKPNHSSEATEQEPASTSNV
EAPPASEEPSTSRSTRSTSQNQQQIIESLKAKLRLYEKQAQGKYKCLICI
DDYKNPAISVSCWHVHCEQCWLQTLGARKLCPQCNSITTPKDLRRIYL*

LD46938.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4813-PA 398 CG4813-PA 1..398 1..398 2111 100 Plus