Clone LD46952 Report

Search the DGRC for LD46952

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:469
Well:52
Vector:pOT2
Associated Gene/TranscriptGlyS-RB
Protein status:LD46952.pep: gold
Preliminary Size:2955
Sequenced Size:3149

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6904 2001-01-01 Release 2 assignment
CG6904 2001-07-04 Blastp of sequenced clone
CG6904 2003-01-01 Sim4 clustering to Release 3
CG6904 2008-04-29 Release 5.5 accounting
CG6904 2008-08-15 Release 5.9 accounting
CG6904 2008-12-18 5.12 accounting

Clone Sequence Records

LD46952.complete Sequence

3149 bp (3149 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052005

> LD46952.complete
CACACACCGATTGATGCACTTTCAAGCAAACATTCGTTATCAGCGGCTTG
CAGTTTTTGTTGCATTTCGTAATTGGCGCCAAGCGAATGCTTTGGAAACA
TACGTTATCAGACTTTATAGCACTACCTGATGGAAAAGTGATAAACGCGA
AACATAAACAAATAGGCGGTGATAAGCGTTATTAGCATTATCAATGCGCC
GGCCGCATGAAAAAGAAAATACAAATTCCTGGCGTCCTCTCTCTCCCTCT
CTTTCGCCCACCACAGAGTGCAACAAAAACAAAATTATCAAGTTTTTAAA
CTTGTTGAGCGGGTTGAATACGGCAACAACAATTGGTACAACAAAAAAAC
ACGAACAAACAATAACAAAATGGGGCGCAAGAATAATACCAATAATGGTG
AACAATTTTTAGTGCTCTCGCTCTCGCTCAGCAGCACGCCGCCACTGACC
TTTATTTGACTTTTAGCTGGCAATGAAAAAATATCTCTGCCTGCCACAAA
CACACAAACACAGACGTACACTTGAGGTCTTGCCGCTGTGTTGTTGTTGC
TGCTGTTGTTCTTGTTGTTTTTAATTTCGGAGTTGCATTGCAGAAGCGCG
TATGTGCGGGTGCGAGTGAGATAGCACTTCATTTTCACCTCCTCCTTCGC
AATCACATAAATAAATTATCAAGTGCAAGAAGTCGACAATTGTTCAACTA
TGAATCGTCGCTTTTCGAGAGTGGAGTCCGGGGCGGACCTTAAGGATTAT
TTCGATCGGGGTGATATCGCTTCCCGGGAGAACCGCTGGAACTTCGAGGT
GGCATGGGAGGTGGCCAACAAGGTGGGCGGTATTTACACGGTGATCCGGT
CGAAGGCATATGTCTCCACCGAGGAGATGGGCGAGCAGTTGTGTATGATG
GGTCCCTACAAGGAGCACTGTGCCCGCACCGAGATGGAGGAGATGGAGTT
CCCCAGGGGAAACCCCCTACTAGACGCTGTCAACTCATTGCGCTCGCGAG
GCTATAAAATCCACACCGGTCGCTGGCTGGTGGACGGAAATCCTCAATTA
ATCCTGTTCGATATTGGATCAGCCGCTTGGAAGCTGGATCAGTTCAAATC
GGAGATGTGGGAGAAGTGCCATATTGGAATACCTCATTTGGATATCGAGA
CGAACGATGCCATTATCCTTGGCTTTATGATTGCCGAGTTCCTGGAGGAG
TTCCGCAACTTTGCCGTGACTTATTCGCAGAACAACGAATTGAGCGCTCC
GAGGATTGTCGCCCACTTCCACGAATGGCAAGCTGGCGTGGGTCTCATTG
TCCTACGTACTCGTCTGGTGGAGATCGCCACTGTGTTCACTACCCACGCC
ACATTGTTGGGTCGTTACTTGTGCGCCGGCAACACCGATTTCTACAACAA
TCTGGACAAGTTCGCCGTGGACGAAGAGGCGGGCAAGCGCCAAATCTATC
ATCGTTATTGCCTGGAGCGAGGTGCCACCCACTTGGCTCATGTGTTCACC
ACCGTCTCCGAGATTACGGGCTACGAGGCAGAGCATCTGCTCAAGCGCAA
ACCGGACATCATCACGCCCAATGGACTGAACGTGAAGAAGTTCTCGGCCA
TCCACGAGTTCCAGAACTTGCACGCCGTTGCCAAGGAGAAGATCAACGAA
TTCGTGCGGGGTCACTTTTACGGCCACATTGACTTTGATTTAGATAAGAC
CCTGTACTTCTTCATCGCCGGTCGCTACGAGTTTGGAAACAAGGGAGCCG
ACATCTTCATCGAGGCACTGGCTCGCTTGAACGCGATGCTCAAGCACGAG
AAGCCGGACACCACGGTGGTGGCCTTTCTCATCTTCCCCACCAAGACCAA
CAACTTCAACGTGGACTCGCTGCGAGGACATGCCGTGATCAAGCAGTTGC
GCGATACGATCAACAACGTCCAGCAGGCCGTGGGCAAGCGGATGTTCGAC
ACTTGTCTGCAGGGCAACATACCCAATGCCGATGATCTGCTTCAGAAGGA
TGACCTCGTCAAGATCAAGCGTTGCATGTTCGCCATGCAGCGCGATTCGA
TGCCGCCTGTTACCACGCACAATGTGGCTGATGACTGGAATGATCCGGTG
CTATCCTCAATCCGTCGTTGCCATCTGTTCAACTCGCGCCACGATCGTGT
CAAGATGGTCTTCCATCCGGAGTTCCTCACATCCACAAATCCTCTGTTTG
GAATCGACTACGAAGAATTTGTCCGTGGCTGCCACTTGGGTGTCTTCCCC
TCATACTACGAGCCCTGGGGTTACACTCCCGCCGAGTGTACGGTGATGGG
TATCCCCAGCGTAACCACCAATCTGTCCGGCTTTGGCTGCTTCATGGAGG
AGCACATCAGTGATCCCAAGTCATACGGTATCTACATCGTGGATCGCCGC
TATATCGGCTTGGAGAACAGCGTTCAGCAGCTGTCCAGCTTTATGATGGA
GTTCTCCAGGCTGAACCGCCGCCAGCGCATTATCCAGCGTAATCGCACGG
AGCGGTTGAGCGATCTTCTGGACTGGCGCACCCTGGGCATTTACTACAGA
CAGGCCAGGGTTAAGGCCCTGCAAGCTGTTTACCCAGACTATGTGGATGA
ATTGTCTCTCTATGGATCGAAGAACAACTTGATCTTCTCGCGACCGCACA
GCGAACCTCCCAGTCCTACTTCATCGCGGCACACCACTCCAGCTCCATCG
GTTCACGGTTCGGATGACGAGGACTCCGTGGATGAGGAGACCGAACTCAA
GGAATTGGGGATTAAGTAGAGTTCTCTGCCAAATGGAAGGCCCTTATATT
TGTAGCGAACAAACCAATTAAAATCAACACACGCGCAATATTACCATAAG
TTCCAGTTGTCTTGTTCCACCAATGTTCATCGAGATACGGGCTAAACTCT
TGCCCGGATGCCTTCGAAACTATCTACCTGCAATTGAAATGCCAGAACAA
ATGTTTTCACATCTAATCAAATTATTAATATTATGTATGCCCAGATCGCA
AGCGTAAGCATTCGAGCAGGACGAGTCCAGATTTTATTAAACGTTGTTTA
GTCCATAAGGAGAACGAGGTCTCCCCGCCCTGTCACCCAGCTTCATACCC
TGCGTATCAAATAAATCGTTATTTAAAGTAAAAAAAAAAAAAAAAAAAA

LD46952.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6904-RB 3193 CG6904-RB 30..3159 1..3130 15650 100 Plus
CG6904.a 2829 CG6904.a 365..2795 700..3130 12155 100 Plus
CG6904-RA 2842 CG6904-RA 256..2686 700..3130 12155 100 Plus
CG6904.a 2829 CG6904.a 30..364 1..335 1675 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10968911..10969884 1673..700 4855 99.9 Minus
chr3R 27901430 chr3R 10967604..10968476 2541..1669 4350 99.9 Minus
chr3R 27901430 chr3R 10971346..10972044 699..1 3465 99.7 Minus
chr3R 27901430 chr3R 10966488..10966939 3129..2678 2260 100 Minus
chr3R 27901430 chr3R 10967373..10967509 2678..2542 685 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15144266..15145239 1673..700 4870 100 Minus
3R 32079331 3R 15142959..15143831 2541..1669 4350 99.9 Minus
3R 32079331 3R 15146701..15147399 699..1 3495 100 Minus
3R 32079331 3R 15141842..15142294 3130..2678 2265 100 Minus
3R 32079331 3R 15142728..15142864 2678..2542 685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14885097..14886070 1673..700 4870 100 Minus
3R 31820162 3R 14883790..14884662 2541..1669 4350 99.8 Minus
3R 31820162 3R 14887532..14888230 699..1 3495 100 Minus
3R 31820162 3R 14882673..14883125 3130..2678 2265 100 Minus
3R 31820162 3R 14883559..14883695 2678..2542 685 100 Minus
Blast to na_te.dros performed 2019-03-16 02:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 1871..2026 250..407 119 55.6 Plus

LD46952.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:47:06 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10966488..10966939 2678..3129 100 <- Minus
chr3R 10967374..10967509 2542..2677 100 <- Minus
chr3R 10967604..10968471 1674..2541 100 <- Minus
chr3R 10968911..10969884 700..1673 99 <- Minus
chr3R 10971346..10972044 1..699 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:53 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RA 61..2130 700..2769 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:02 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RA 61..2130 700..2769 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:22 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
GlyS-RB 1..2070 700..2769 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:25 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RA 61..2130 700..2769 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:20:21 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
GlyS-RB 1..2070 700..2769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:08:32 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RB 1..3129 1..3129 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:02 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RB 1..3129 1..3129 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:22 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
GlyS-RB 1..3129 1..3129 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:25 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RB 1..3129 1..3129 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:20:21 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
GlyS-RB 1..3129 1..3129 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:06 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15141843..15142294 2678..3129 100 <- Minus
3R 15142729..15142864 2542..2677 100 <- Minus
3R 15142959..15143826 1674..2541 100 <- Minus
3R 15144266..15145239 700..1673 100 <- Minus
3R 15146701..15147399 1..699 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:06 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15141843..15142294 2678..3129 100 <- Minus
3R 15142729..15142864 2542..2677 100 <- Minus
3R 15142959..15143826 1674..2541 100 <- Minus
3R 15144266..15145239 700..1673 100 <- Minus
3R 15146701..15147399 1..699 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:06 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15141843..15142294 2678..3129 100 <- Minus
3R 15142729..15142864 2542..2677 100 <- Minus
3R 15142959..15143826 1674..2541 100 <- Minus
3R 15144266..15145239 700..1673 100 <- Minus
3R 15146701..15147399 1..699 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:22 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10967565..10968016 2678..3129 100 <- Minus
arm_3R 10968451..10968586 2542..2677 100 <- Minus
arm_3R 10968681..10969548 1674..2541 100 <- Minus
arm_3R 10969988..10970961 700..1673 100 <- Minus
arm_3R 10972423..10973121 1..699 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:18 Download gff for LD46952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14882674..14883125 2678..3129 100 <- Minus
3R 14883560..14883695 2542..2677 100 <- Minus
3R 14883790..14884657 1674..2541 100 <- Minus
3R 14885097..14886070 700..1673 100 <- Minus
3R 14887532..14888230 1..699 100   Minus

LD46952.pep Sequence

Translation from 699 to 2768

> LD46952.pep
MNRRFSRVESGADLKDYFDRGDIASRENRWNFEVAWEVANKVGGIYTVIR
SKAYVSTEEMGEQLCMMGPYKEHCARTEMEEMEFPRGNPLLDAVNSLRSR
GYKIHTGRWLVDGNPQLILFDIGSAAWKLDQFKSEMWEKCHIGIPHLDIE
TNDAIILGFMIAEFLEEFRNFAVTYSQNNELSAPRIVAHFHEWQAGVGLI
VLRTRLVEIATVFTTHATLLGRYLCAGNTDFYNNLDKFAVDEEAGKRQIY
HRYCLERGATHLAHVFTTVSEITGYEAEHLLKRKPDIITPNGLNVKKFSA
IHEFQNLHAVAKEKINEFVRGHFYGHIDFDLDKTLYFFIAGRYEFGNKGA
DIFIEALARLNAMLKHEKPDTTVVAFLIFPTKTNNFNVDSLRGHAVIKQL
RDTINNVQQAVGKRMFDTCLQGNIPNADDLLQKDDLVKIKRCMFAMQRDS
MPPVTTHNVADDWNDPVLSSIRRCHLFNSRHDRVKMVFHPEFLTSTNPLF
GIDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFME
EHISDPKSYGIYIVDRRYIGLENSVQQLSSFMMEFSRLNRRQRIIQRNRT
ERLSDLLDWRTLGIYYRQARVKALQAVYPDYVDELSLYGSKNNLIFSRPH
SEPPSPTSSRHTTPAPSVHGSDDEDSVDEETELKELGIK*

LD46952.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17161-PA 709 GF17161-PA 21..709 1..689 3662 97.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20891-PA 709 GG20891-PA 21..709 1..689 3746 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14560-PA 711 GH14560-PA 22..711 1..689 3441 94.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
GlyS-PD 689 CG6904-PD 1..689 1..689 3667 100 Plus
GlyS-PA 709 CG6904-PA 21..709 1..689 3667 100 Plus
GlyS-PB 689 CG6904-PB 1..689 1..689 3667 100 Plus
GlyS-PC 689 CG6904-PC 1..689 1..689 3667 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23664-PA 709 GI23664-PA 21..709 1..689 3638 96.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21689-PA 771 GL21689-PA 83..771 1..689 3527 94.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19945-PB 689 GA19945-PB 1..689 1..689 3514 94.3 Plus
Dpse\GA19945-PA 709 GA19945-PA 21..709 1..689 3513 94.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25805-PA 709 GM25805-PA 21..709 1..689 3742 99.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20381-PA 709 GD20381-PA 21..709 1..689 3746 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23225-PA 710 GJ23225-PA 22..710 1..689 3539 95.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13980-PA 709 GK13980-PA 21..709 1..689 3677 97.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26410-PA 709 GE26410-PA 21..709 1..689 3746 100 Plus

LD46952.hyp Sequence

Translation from 699 to 2768

> LD46952.hyp
MNRRFSRVESGADLKDYFDRGDIASRENRWNFEVAWEVANKVGGIYTVIR
SKAYVSTEEMGEQLCMMGPYKEHCARTEMEEMEFPRGNPLLDAVNSLRSR
GYKIHTGRWLVDGNPQLILFDIGSAAWKLDQFKSEMWEKCHIGIPHLDIE
TNDAIILGFMIAEFLEEFRNFAVTYSQNNELSAPRIVAHFHEWQAGVGLI
VLRTRLVEIATVFTTHATLLGRYLCAGNTDFYNNLDKFAVDEEAGKRQIY
HRYCLERGATHLAHVFTTVSEITGYEAEHLLKRKPDIITPNGLNVKKFSA
IHEFQNLHAVAKEKINEFVRGHFYGHIDFDLDKTLYFFIAGRYEFGNKGA
DIFIEALARLNAMLKHEKPDTTVVAFLIFPTKTNNFNVDSLRGHAVIKQL
RDTINNVQQAVGKRMFDTCLQGNIPNADDLLQKDDLVKIKRCMFAMQRDS
MPPVTTHNVADDWNDPVLSSIRRCHLFNSRHDRVKMVFHPEFLTSTNPLF
GIDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFME
EHISDPKSYGIYIVDRRYIGLENSVQQLSSFMMEFSRLNRRQRIIQRNRT
ERLSDLLDWRTLGIYYRQARVKALQAVYPDYVDELSLYGSKNNLIFSRPH
SEPPSPTSSRHTTPAPSVHGSDDEDSVDEETELKELGIK*

LD46952.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
GlyS-PD 689 CG6904-PD 1..689 1..689 3667 100 Plus
GlyS-PA 709 CG6904-PA 21..709 1..689 3667 100 Plus
GlyS-PB 689 CG6904-PB 1..689 1..689 3667 100 Plus
GlyS-PC 689 CG6904-PC 1..689 1..689 3667 100 Plus