Clone LD47007 Report

Search the DGRC for LD47007

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:470
Well:7
Vector:pOT2
Associated Gene/TranscriptCG11982-RA
Protein status:LD47007.pep: gold
Preliminary Size:1698
Sequenced Size:1571

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11982 2001-01-01 Release 2 assignment
CG11982 2001-07-04 Blastp of sequenced clone
CG11982 2003-01-01 Sim4 clustering to Release 3
CG11982 2008-04-29 Release 5.5 accounting
CG11982 2008-08-15 Release 5.9 accounting
CG11982 2008-12-18 5.12 accounting

Clone Sequence Records

LD47007.complete Sequence

1571 bp (1571 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052007

> LD47007.complete
CGGCAAAGGCCACTTTGTAAGGGGCCCTTATTTATAGAAAAATTAAATTC
TATCCCTTAAACTCCCAATTGTTCCGACTGAACCCAATGACCGGGTAAAG
CTAGGCGCGTGTACCTTGTCCTCCTCTTGTCACATCAACGTCTACAGCCG
CAAGCAGCCTACATCATCGGAAGGCGACAGTCTTGCACAATCGTCAGTGG
AGCCGTTGCCCAGGAAATAAAGAACCTACCGCAGGATGGCAGAGGCAATG
GTTGTGGAGGACCGCCCCGCGGAAGCCAAGCGATTCTTCTGCCACATGTG
CAACGTGGAGATCAACATTCCCAACTCAGACTTCACCTGTCCGCTGTGCG
CCAACGGTTTCGTGGAGGAGCTGCCGGCAAATGCGCCGGAGATGGATTCT
TCGACGGCTGGAGCATCCGGCAGTGCCAGATCCGGAAGCAGCGGTAGTGG
CTCTTCTGGCTCACACGACACCCTGAGCAGAGGCAGCTCATCGAGCGGAT
CTCAGGTGAATGTTGAGTCGCTGCGTAACGATATTGTGTCGCTGCTAAAC
ATGCGGAATGTGCCCAACTTGGAAATTACCATCGAGCCAAACAGACGGCA
CAGCAACGTGCTGCATCTAGGCGGCTTTGGTGGTCCCTCGGGTAGTGACT
CTGCCCGCGGCCTGACCGCCGGCGGACGAGTGCGTCCGGCAAATTTGGAC
CGACTGGACAATGTTCTCTTTGATTTTCTGCAGAGCCTGCCACTGGCCGG
CGCCACGGCCGAAATAGTAACTGGACCCGGTGGAGGAGGTGTAGGCGGCG
GCGGTAACTCGCACATGTTCTTCATGGGAAACCCGGGAGATTATGCGTGG
GGCCGAGAGGGACTAGACACCATTGTCACCCAAATGCTCAACCAAATGGA
AACTTCAGGACCGCCGCCATTGTCGGCGCAGCGCATAAACGAGATACCCA
ATGTGCAGATCAATGCCGAGGAGGTAAACCGCAAGATCCAGTGCTCTATA
TGCTGGGACGACTTCAAGATTGACGAGACGGTACGCAAGCTGCCCTGCTC
GCACCTGTATCACGAGAACTGCATCGTGCCTTGGCTAAACCTGCACAGCA
CCTGCCCCATATGCCGCAAGTCACTGGCAGACGATGGCAACGATGCGGAC
GACGAATTTGTCATGCTCGATGCCTTCGGACCAGAGATGGCGGCCGATGG
CAGTAATTCCGAAAGGAGATCGGCCAGCACCGCCACAGGAACGGACAATC
CCTCGCCGGCTAATAATCCCAGTCAGGCAGCGGCGGAAGGCGGCCGAACA
CGTCCGGATGCTAATCCCGCCCAGGCAGCACGCAACAACATCTTTACCTT
TGACGACGACAACATGTTTCTGGACTAGCTGGTAGGGCGATGCTAAATCG
AAGTGGAGCGATGATCGATTGATATTCAAAATTAAGCCAAATATTGGCCG
CATATATATTTATAATAGTTTCTCCTCACGCTTAATTTTGTTGTTGTTCA
AAATAACGATTTGTAATAAACAAAACGGGACATACGATTCCGTTGGCTCT
GCAAAAAAAAAAAAAAAAAAA

LD47007.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-RA 1579 CG11982-RA 28..1579 1..1552 7760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4832373..4833924 1..1552 7700 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9006479..9008035 1..1557 7785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8747310..8748866 1..1557 7785 100 Plus
Blast to na_te.dros performed 2019-03-15 19:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 1369..1472 1506..1395 119 61.1 Minus

LD47007.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:13:01 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4832373..4833924 1..1552 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:54 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 1..1143 236..1378 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:05 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 1..1143 236..1378 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:46:28 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 1..1143 236..1378 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:27 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 1..1143 236..1378 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:59 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 1..1143 236..1378 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:08:36 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 28..1579 1..1552 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:05 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 28..1579 1..1552 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:46:28 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 24..1575 1..1552 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:28 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 28..1579 1..1552 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:59 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
CG11982-RA 24..1575 1..1552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:13:01 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9006479..9008030 1..1552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:13:01 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9006479..9008030 1..1552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:13:01 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9006479..9008030 1..1552 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:46:28 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4832201..4833752 1..1552 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:21 Download gff for LD47007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8747310..8748861 1..1552 100   Plus

LD47007.hyp Sequence

Translation from 235 to 1377

> LD47007.hyp
MAEAMVVEDRPAEAKRFFCHMCNVEINIPNSDFTCPLCANGFVEELPANA
PEMDSSTAGASGSARSGSSGSGSSGSHDTLSRGSSSSGSQVNVESLRNDI
VSLLNMRNVPNLEITIEPNRRHSNVLHLGGFGGPSGSDSARGLTAGGRVR
PANLDRLDNVLFDFLQSLPLAGATAEIVTGPGGGGVGGGGNSHMFFMGNP
GDYAWGREGLDTIVTQMLNQMETSGPPPLSAQRINEIPNVQINAEEVNRK
IQCSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLADD
GNDADDEFVMLDAFGPEMAADGSNSERRSASTATGTDNPSPANNPSQAAA
EGGRTRPDANPAQAARNNIFTFDDDNMFLD*

LD47007.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-PA 380 CG11982-PA 1..380 1..380 2015 100 Plus
mura-PB 868 CG9381-PB 744..867 226..350 174 31 Plus
mura-PA 868 CG9381-PA 744..867 226..350 174 31 Plus
mura-PC 1173 CG9381-PC 1049..1172 226..350 174 31 Plus

LD47007.pep Sequence

Translation from 235 to 1377

> LD47007.pep
MAEAMVVEDRPAEAKRFFCHMCNVEINIPNSDFTCPLCANGFVEELPANA
PEMDSSTAGASGSARSGSSGSGSSGSHDTLSRGSSSSGSQVNVESLRNDI
VSLLNMRNVPNLEITIEPNRRHSNVLHLGGFGGPSGSDSARGLTAGGRVR
PANLDRLDNVLFDFLQSLPLAGATAEIVTGPGGGGVGGGGNSHMFFMGNP
GDYAWGREGLDTIVTQMLNQMETSGPPPLSAQRINEIPNVQINAEEVNRK
IQCSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLADD
GNDADDEFVMLDAFGPEMAADGSNSERRSASTATGTDNPSPANNPSQAAA
EGGRTRPDANPAQAARNNIFTFDDDNMFLD*

LD47007.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16575-PA 376 GF16575-PA 1..376 1..380 1414 79.7 Plus
Dana\GF18360-PA 547 GF18360-PA 212..286 229..301 155 38.7 Plus
Dana\GF11510-PA 628 GF11510-PA 303..344 253..294 153 52.4 Plus
Dana\GF16054-PA 854 GF16054-PA 730..801 229..299 152 36.1 Plus
Dana\GF16908-PA 147 GF16908-PA 30..117 214..300 146 34.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14428-PA 381 GG14428-PA 1..381 1..380 1646 94 Plus
Dere\GG19861-PA 616 GG19861-PA 303..344 253..294 154 52.4 Plus
Dere\GG17363-PA 887 GG17363-PA 766..837 229..299 154 37.5 Plus
Dere\GG13423-PA 538 GG13423-PA 211..285 229..301 151 37.3 Plus
Dere\GG22947-PA 147 GG22947-PA 44..117 227..300 143 36.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19379-PA 412 GH19379-PA 1..412 1..380 1143 61.8 Plus
Dgri\GH19305-PA 885 GH19305-PA 762..876 229..353 178 34.9 Plus
Dgri\GH18348-PA 147 GH18348-PA 30..117 214..300 156 35.2 Plus
Dgri\GH19534-PA 534 GH19534-PA 199..273 229..301 153 38.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11982-PA 380 CG11982-PA 1..380 1..380 2015 100 Plus
mura-PB 868 CG9381-PB 744..867 226..350 174 31 Plus
mura-PA 868 CG9381-PA 744..867 226..350 174 31 Plus
mura-PC 1173 CG9381-PC 1049..1172 226..350 174 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22582-PA 383 GI22582-PA 1..383 1..380 1169 64.5 Plus
Dmoj\GI23331-PA 147 GI23331-PA 30..117 214..300 147 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12113-PA 362 GL12113-PA 1..362 1..380 1256 67.7 Plus
Dper\GL16830-PA 737 GL16830-PA 303..344 253..294 155 52.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11309-PA 362 GA11309-PA 1..362 1..380 1256 67.7 Plus
Dpse\GA15425-PB 617 GA15425-PB 303..344 253..294 154 52.4 Plus
Dpse\GA20524-PA 147 GA20524-PA 44..117 227..300 145 32.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23778-PA 379 GM23778-PA 1..379 1..380 1948 97.1 Plus
Dsec\GM26248-PA 872 GM26248-PA 751..822 229..299 154 37.5 Plus
Dsec\GM11764-PA 611 GM11764-PA 303..344 253..294 153 52.4 Plus
Dsec\GM17873-PA 163 GM17873-PA 44..117 227..300 143 36.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18588-PA 379 GD18588-PA 1..379 1..380 1947 97.1 Plus
Dsim\GD24897-PA 510 GD24897-PA 99..140 253..294 155 52.4 Plus
Dsim\GD20788-PA 877 GD20788-PA 756..827 229..299 154 37.5 Plus
Dsim\GD19873-PA 537 GD19873-PA 210..284 229..301 150 37.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10303-PA 382 GJ10303-PA 1..382 1..380 1213 66.5 Plus
Dvir\GJ10273-PA 1174 GJ10273-PA 1047..1124 229..305 160 35.9 Plus
Dvir\GJ10332-PA 114 GJ10332-PA 11..78 227..294 150 36.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11676-PA 362 GK11676-PA 1..362 1..380 1179 67.6 Plus
Dwil\GK11818-PA 846 GK11818-PA 726..803 229..303 157 39.7 Plus
Dwil\GK13091-PA 147 GK13091-PA 44..117 227..300 144 32.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25922-PA 380 GE25922-PA 1..380 1..380 1718 96.1 Plus
Dyak\GE10219-PA 537 GE10219-PA 211..284 229..301 156 36.5 Plus
Dyak\GE11386-PA 616 GE11386-PA 303..344 253..294 154 52.4 Plus
Dyak\GE24768-PA 1040 GE24768-PA 919..990 229..299 153 37.5 Plus