BDGP Sequence Production Resources |
Search the DGRC for LD47143
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 471 |
Well: | 43 |
Vector: | pOT2 |
Associated Gene/Transcript | Rpn7-RA |
Protein status: | LD47143.pep: gold |
Preliminary Size: | 1439 |
Sequenced Size: | 1369 |
Gene | Date | Evidence |
---|---|---|
CG5378 | 2001-01-01 | Release 2 assignment |
CG5378 | 2001-07-04 | Blastp of sequenced clone |
CG5378 | 2003-01-01 | Sim4 clustering to Release 3 |
Rpn7 | 2008-04-29 | Release 5.5 accounting |
Rpn7 | 2008-08-15 | Release 5.9 accounting |
Rpn7 | 2008-12-18 | 5.12 accounting |
1369 bp (1369 high quality bases) assembled on 2001-07-04
GenBank Submission: AY052008
> LD47143.complete CGATTTGACAAAAACAAAATTGAGTTTTGTCAAGAAAATCAACTATTTTT CTGTGTTTAAAAAACCGAAGCCAACAAATCCGACCAAAATGCCTGCCGAA AACTTGGAGGAGCAGGGTCTGGAGAAGAACCCGAACCTGGAGCTGGCCCA GACGAAGTTCCTGCTTACCCTGGCGGAATACAAGCAGGATGCGGCATTGA AGGCGAAGCTTCTGGAGGCGATTCGCACGGAGAATATGGCCCCGTGGTAC GAGCACATCTGCTCGGAACTCGGCTGGACCGTAGACAAGGATCTGCTGGC GCGAATGAAGGAGAACAACCGCGTAGAGGTGGAGCAGCTAGATGCGGCAA TCGAGGATGCGGAGAAGAATCTGGGCGAGATGGAAGTGCGCGAGGCGAAT CTTAAGAAGTCAGAGTACTTGTGCCGCATCGGCGACAAGGCTGCCGCAGA GACTGCCTTCCGCAAGACCTACGAGAAGACCGTTTCCCTGGGTCACCGCC TGGACATCGTGTTCCATCTGATCCGCTTGGGACTGTTTTACCTTGACCAC GATCTCATCACTCGCAACATCGACAAGGCCAAGTATCTGATCGAGGAAGG CGGCGATTGGGACCGACGCAACCGGTTGAAGGTCTACCAGGGTGTTTACT CGGTGGCGGTGCGTGACTTCAAGGCGGCGGCCACGTTCTTCCTGGACACC GTAAGCACCTTCACCTCATACGAACTGATGGACTACCCCACCTTCGTGCG TTACACCGTTTACGTGGCCATGATTGCCCTGCCGCGCAATGAGCTGCGCG ACAAAGTGATCAAGGGCTCCGAAATCCAGGAGGTGCTCCATGGCCTGCCC GACGTGAAACAGTTCCTGTTTTCCTTGTACAACTGCCAATATGAGAACTT CTACGTACACCTGGCCGGCGTAGAGAAGCAATTGCGCTTGGACTACCTCA TTCATCCCCACTACCGCTACTACGTGCGCGAGATGCGCATTCTGGGCTAC ACCCAGTTGCTGGAGTCGTATCGCTCCCTCACCCTGCAGTATATGGCCGA GTCGTTCGGCGTAACAGTGGAATACATTGACCAGGAGCTGGCACGCTTCA TCGCCGCCGGACGGCTGCATGCCAAGGTGGATCGCGTTGGCGGCATTGTG GAGACCAATCGGCCTGACAACAAGAACTGGCAGTACCAGGCGACCATCAA GCAGGGCGATCTGCTGCTCAACCGCATCCAGAAGTTGAGCCGCGTGATAA ACATCTAATGTAGTTCATATAAAAAGATTTATTCAAATTCAACATTTATT ACAGTGTAAAGCTAATGCAACGTACAATAATAAAAACGATATAAAACTCA AAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 18284205..18285553 | 1349..1 | 6745 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22460661..22462010 | 1350..1 | 6750 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22201492..22202841 | 1350..1 | 6750 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18284205..18285553 | 1..1349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 1..1170 | 89..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 1..1170 | 89..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 1..1170 | 89..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 1..1170 | 89..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 1..1170 | 89..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 41..1389 | 1..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 41..1389 | 1..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 45..1393 | 1..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 41..1389 | 1..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn7-RA | 45..1393 | 1..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22460662..22462010 | 1..1349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22460662..22462010 | 1..1349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22460662..22462010 | 1..1349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18286384..18287732 | 1..1349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22201493..22202841 | 1..1349 | 100 | Minus |
Translation from 0 to 1257
> LD47143.hyp DLTKTKLSFVKKINYFSVFKKPKPTNPTKMPAENLEEQGLEKNPNLELAQ TKFLLTLAEYKQDAALKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLA RMKENNRVEVEQLDAAIEDAEKNLGEMEVREANLKKSEYLCRIGDKAAAE TAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIEEG GDWDRRNRLKVYQGVYSVAVRDFKAAATFFLDTVSTFTSYELMDYPTFVR YTVYVAMIALPRNELRDKVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENF YVHLAGVEKQLRLDYLIHPHYRYYVREMRILGYTQLLESYRSLTLQYMAE SFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKNWQYQATIK QGDLLLNRIQKLSRVINI*
Translation from 88 to 1257
> LD47143.pep MPAENLEEQGLEKNPNLELAQTKFLLTLAEYKQDAALKAKLLEAIRTENM APWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEV REANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLF YLDHDLITRNIDKAKYLIEEGGDWDRRNRLKVYQGVYSVAVRDFKAAATF FLDTVSTFTSYELMDYPTFVRYTVYVAMIALPRNELRDKVIKGSEIQEVL HGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYVREMR ILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRV GGIVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRVINI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16564-PA | 389 | GF16564-PA | 1..389 | 1..389 | 2017 | 96.4 | Plus |
Dana\GF10799-PA | 524 | GF10799-PA | 171..471 | 79..373 | 194 | 20.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12513-PA | 389 | GG12513-PA | 1..389 | 1..389 | 2039 | 98.2 | Plus |
Dere\GG13444-PA | 525 | GG13444-PA | 172..472 | 79..373 | 190 | 20.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18475-PA | 389 | GH18475-PA | 1..389 | 1..389 | 1932 | 91.8 | Plus |
Dgri\GH16963-PA | 537 | GH16963-PA | 175..482 | 71..373 | 191 | 21 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn7-PA | 389 | CG5378-PA | 1..389 | 1..389 | 2005 | 100 | Plus |
CSN1b-PA | 525 | CG3889-PA | 172..472 | 79..373 | 187 | 20.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10792-PA | 389 | GI10792-PA | 1..389 | 1..389 | 1968 | 93.1 | Plus |
Dmoj\GI11827-PA | 526 | GI11827-PA | 179..473 | 85..373 | 180 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23337-PA | 389 | GL23337-PA | 1..389 | 1..389 | 2011 | 96.1 | Plus |
Dper\GL22061-PA | 520 | GL22061-PA | 167..467 | 79..373 | 182 | 20.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18834-PA | 389 | GA18834-PA | 1..389 | 1..389 | 2015 | 96.4 | Plus |
Dpse\GA17754-PA | 520 | GA17754-PA | 167..467 | 79..373 | 182 | 20.8 | Plus |
Dpse\GA26568-PA | 461 | GA26568-PA | 183..419 | 138..367 | 154 | 22.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23647-PA | 389 | GM23647-PA | 1..389 | 1..389 | 2068 | 99.7 | Plus |
Dsec\GM14913-PA | 525 | GM14913-PA | 172..472 | 79..373 | 189 | 20.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18456-PA | 389 | GD18456-PA | 1..389 | 1..389 | 2070 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14389-PA | 389 | GJ14389-PA | 1..389 | 1..389 | 1972 | 93.6 | Plus |
Dvir\GJ13527-PA | 529 | GJ13527-PA | 169..476 | 71..373 | 193 | 21.3 | Plus |