Clone LD47223 Report

Search the DGRC for LD47223

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:472
Well:23
Vector:pOT2
Associated Gene/TranscriptCG5044-RA
Protein status:LD47223.pep: gold
Preliminary Size:1713
Sequenced Size:1667

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5044 2001-01-01 Release 2 assignment
CG5044 2001-07-04 Blastp of sequenced clone
CG5044 2003-01-01 Sim4 clustering to Release 3
CG5044 2008-04-29 Release 5.5 accounting
CG5044 2008-08-15 Release 5.9 accounting
CG5044 2008-12-18 5.12 accounting

Clone Sequence Records

LD47223.complete Sequence

1667 bp (1667 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052009

> LD47223.complete
CTTCGCCCCACACACAACATTACTGACGACAGCCGCTCAAAATGGGCCCA
ATTCAAAGGTTGGTGTACACATTTGGTCATCGCACCTGTAGCCAATTGCC
GATGATCGGCGGAGCAACGATATCCCAAACAAAACCAACAACAATGGCTC
TCTCCGTTCGCCAATCCTCCTCCTCCGTGCTGGCCACGGAGTCCTCTAAC
AAGGGAATGATTATTCTGAACCGGCCCAAGGCGCTTAACGCCATCAACTT
GGAGATGGTACGCAAGATCTACAAGCACCTGAAGAAGTGCGAGAAGTCCA
AGTCGCTGGTGATCATCAAGGGCACAGGTGACAAGGCCTTCTGCGCCGGT
GGAGATGTGCGCGCTCTGGTCGAGGCTGGCCCTACGGATGAGTCGAAGAG
CTTCTTCCGGGAGGAGTACAGCACGAATGCCCTGATCGGAAACTATAAGA
TTCCCTACATCGCCATCATTGACGGTATTACCATGGGCGGTGGCGTGGGT
CTGAGTGTGCATGGCAAGTACCGGGTGGCCAGCGATCGGACACTGTTCGC
CATGCCCGAGACGGCGATTGGCCTCTTCCCGGATGTGGGTGGATCATACT
TCCTGCCTCGACTGCAGGGAAAGCTGGGCCTCTATCTGGGTCTCACAGGA
TATCGACTGCGCGGAGCCGATGTCTATTACTCAGGCATTGCTACGCACTA
CTGCGAGAGCAGCAAGATCCCTGATCTGGAGACGGCTCTCCTTAACTGCC
CGGATGCGGATGATGTGCCTGAGCTGCTGCAGAAGTACCATTCCCCGCCA
GAAAAGCCCTTCTCGCTGCAGCCTGTCCTGGAGCAGATCAACAAGAACTT
TTCAGCGGACTCGGTGGAGGGGATTCTAGAGAATCTGCAGAACGATGGCA
GTGAATGGGCCAAGAAGACGCTTGAGACGCTCTCGAAGATGTCTCCCACC
TCGATGAAGGTTACGTTCCGTCAGTTGGAGCTCGGATCACAGCTGTCGCT
GGCTCAGTGTCTTATTATGGAATATCGTCTGGCCGTGCGTCATCTGGAGC
GAAGTGATTTCAAGGAGGGAGTGCGCGCCCTACTCATCGACAAGGATCAG
AAGCCCCAGTGGCAGCCAACCAAGCTGGCCGATGTCACTGAGGAACATGT
GCAGTGGTTTTTCCGCAAGCTACCGGACACCGAGGAACTCAAGCTGTAAT
GTAGCAAGCTTAGTTTTGTTTTTGTTTGAGCCTTGGCATCCAATCCTGTT
TGTCTTCCGTTGAGCCGCTCATTCTTATATGCACACAACTTAATATCTTT
GTATATATCATTGCAAGCTTGAGTTATGTTATGCATGGTTCCTTGCCTGC
CGTTTTGCAATATTCTTTATATATCTTTAGCGTTCTGTGGCCACAGTTTG
ATGAGTTCTGTCGGCTAATTTTCCGCAATCTCTTCTCTGTTTCATTCCAA
CAGCGAATAACTTCGAGGAAGAATCCTATTCGCCGGTATTTACCAATAAC
GATTGTGAAATTCAATGCATTTAAATATATGATATACATATATGCCTATA
TATATTATGTACAATTCGTAGTCCTAATACAATCAATAATTGTGCCTAAA
GAATCGTTAGAATTCGTTTACCAAGAATAAAAAGAAGTGTATACGTTTAA
AAAAAAAAAAAAAAAAA

LD47223.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-RA 1824 CG5044-RA 177..1824 1..1648 8240 100 Plus
CG5044-RB 1827 CG5044-RB 177..1827 1..1648 8185 99.8 Plus
CG5044.a 1569 CG5044.a 177..1374 1..1195 5920 99.7 Plus
CG5044.a 1569 CG5044.a 1375..1569 1454..1648 975 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11182027..11182909 44..926 4415 100 Plus
chr3R 27901430 chr3R 11183172..11183895 925..1648 3620 100 Plus
chr3R 27901430 chr3R 11181912..11181956 1..45 225 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15357392..15358274 44..926 4415 100 Plus
3R 32079331 3R 15358537..15359262 925..1650 3630 100 Plus
3R 32079331 3R 15357277..15357321 1..45 225 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15098223..15099105 44..926 4415 100 Plus
3R 31820162 3R 15099368..15100093 925..1650 3630 100 Plus
3R 31820162 3R 15098108..15098152 1..45 225 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:46:20 has no hits.

LD47223.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:47:11 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11181912..11181955 1..44 100 -> Plus
chr3R 11182028..11182909 45..926 100 -> Plus
chr3R 11183174..11183895 927..1648 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:30:59 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 1..1158 42..1199 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:07 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 1..1158 42..1199 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:27 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 1..1158 42..1199 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:30 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 1..1158 42..1199 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:20:32 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 1..1158 42..1199 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:08:42 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 33..1680 1..1648 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:07 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 33..1680 1..1648 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:27 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 49..1696 1..1648 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:30 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 33..1680 1..1648 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:20:32 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
CG5044-RA 49..1696 1..1648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:11 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15357277..15357320 1..44 100 -> Plus
3R 15357393..15358274 45..926 100 -> Plus
3R 15358539..15359260 927..1648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:11 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15357277..15357320 1..44 100 -> Plus
3R 15357393..15358274 45..926 100 -> Plus
3R 15358539..15359260 927..1648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:11 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15357277..15357320 1..44 100 -> Plus
3R 15357393..15358274 45..926 100 -> Plus
3R 15358539..15359260 927..1648 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:27 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11182999..11183042 1..44 100 -> Plus
arm_3R 11183115..11183996 45..926 100 -> Plus
arm_3R 11184261..11184982 927..1648 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:24 Download gff for LD47223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15098108..15098151 1..44 100 -> Plus
3R 15098224..15099105 45..926 100 -> Plus
3R 15099370..15100091 927..1648 100   Plus

LD47223.pep Sequence

Translation from 41 to 1198

> LD47223.pep
MGPIQRLVYTFGHRTCSQLPMIGGATISQTKPTTMALSVRQSSSSVLATE
SSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKAF
CAGGDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGG
GVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYLG
LTGYRLRGADVYYSGIATHYCESSKIPDLETALLNCPDADDVPELLQKYH
SPPEKPFSLQPVLEQINKNFSADSVEGILENLQNDGSEWAKKTLETLSKM
SPTSMKVTFRQLELGSQLSLAQCLIMEYRLAVRHLERSDFKEGVRALLID
KDQKPQWQPTKLADVTEEHVQWFFRKLPDTEELKL*

LD47223.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23000-PA 351 GF23000-PA 1..351 35..385 1787 94 Plus
Dana\GF11161-PA 293 GF11161-PA 43..230 47..228 204 29.8 Plus
Dana\GF11465-PA 299 GF11465-PA 43..225 50..228 172 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16921-PA 385 GG16921-PA 1..385 1..385 2010 97.1 Plus
Dere\GG22466-PA 294 GG22466-PA 25..214 37..218 207 31.1 Plus
Dere\GG22562-PA 299 GG22562-PA 51..225 56..228 174 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16630-PA 354 GH16630-PA 6..354 38..385 1656 87.1 Plus
Dgri\GH20865-PA 293 GH20865-PA 46..213 50..218 186 31 Plus
Dgri\GH22640-PA 298 GH22640-PA 53..224 59..228 170 28.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PA 385 CG5044-PA 1..385 1..385 1986 100 Plus
CG5044-PB 386 CG5044-PB 3..386 2..385 1981 100 Plus
Echs1-PA 295 CG6543-PA 45..215 47..218 205 31.6 Plus
Echs1-PB 295 CG6543-PB 45..215 47..218 205 31.6 Plus
CG8778-PA 299 CG8778-PA 51..225 56..228 174 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22035-PA 354 GI22035-PA 3..354 35..385 1664 87.8 Plus
Dmoj\GI20973-PA 293 GI20973-PA 5..213 17..218 187 27.9 Plus
Dmoj\GI21154-PA 301 GI21154-PA 56..227 59..228 173 29.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13727-PA 394 GL13727-PA 4..394 3..385 1785 88 Plus
Dper\GL16995-PA 296 GL16995-PA 58..216 49..218 148 29.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18617-PA 394 GA18617-PA 4..394 3..385 1785 88 Plus
Dpse\GA19673-PB 296 GA19673-PB 49..216 50..218 207 32.2 Plus
Dpse\GA19673-PA 296 GA19673-PA 49..216 50..218 207 32.2 Plus
Dpse\GA21314-PA 298 GA21314-PA 42..224 50..228 166 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24227-PA 351 GM24227-PA 1..351 35..385 1843 98.3 Plus
Dsec\GM20252-PA 294 GM20252-PA 25..214 37..218 201 30.6 Plus
Dsec\GM20345-PA 233 GM20345-PA 2..159 70..228 151 26.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19018-PA 351 GD19018-PA 1..351 35..385 1850 98.9 Plus
Dsim\GD25738-PA 294 GD25738-PA 25..214 37..218 201 30.6 Plus
Dsim\GD25824-PA 299 GD25824-PA 51..225 56..228 172 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10482-PA 354 GJ10482-PA 3..354 35..385 1668 87.8 Plus
Dvir\GJ20693-PA 293 GJ20693-PA 46..213 50..218 184 30.5 Plus
Dvir\GJ21004-PA 281 GJ21004-PA 25..207 50..228 177 29.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11777-PA 351 GK11777-PA 1..351 35..385 1733 90.3 Plus
Dwil\GK17937-PA 295 GK17937-PA 48..215 50..218 205 32.2 Plus
Dwil\GK15915-PA 302 GK15915-PA 46..228 50..228 184 30.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24304-PA 351 GE24304-PA 1..351 35..385 1853 98.9 Plus
Dyak\GE13337-PA 294 GE13337-PA 25..214 37..218 211 31.6 Plus
Dyak\GE13432-PA 299 GE13432-PA 51..225 56..228 179 29 Plus

LD47223.hyp Sequence

Translation from 41 to 1198

> LD47223.hyp
MGPIQRLVYTFGHRTCSQLPMIGGATISQTKPTTMALSVRQSSSSVLATE
SSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKAF
CAGGDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGG
GVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYLG
LTGYRLRGADVYYSGIATHYCESSKIPDLETALLNCPDADDVPELLQKYH
SPPEKPFSLQPVLEQINKNFSADSVEGILENLQNDGSEWAKKTLETLSKM
SPTSMKVTFRQLELGSQLSLAQCLIMEYRLAVRHLERSDFKEGVRALLID
KDQKPQWQPTKLADVTEEHVQWFFRKLPDTEELKL*

LD47223.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5044-PA 385 CG5044-PA 1..385 1..385 1986 100 Plus
CG5044-PB 386 CG5044-PB 3..386 2..385 1981 100 Plus
CG6543-PA 295 CG6543-PA 45..215 47..218 205 31.6 Plus
CG6543-PB 295 CG6543-PB 45..215 47..218 205 31.6 Plus
CG8778-PA 299 CG8778-PA 51..225 56..228 174 28.4 Plus