Clone LD47277 Report

Search the DGRC for LD47277

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:472
Well:77
Vector:pOT2
Associated Gene/TranscriptCG11367-RA
Protein status:LD47277.pep: gold
Preliminary Size:1867
Sequenced Size:1820

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11367 2001-01-01 Release 2 assignment
CG11367 2001-07-04 Blastp of sequenced clone
CG11367 2003-01-01 Sim4 clustering to Release 3
CG11367 2008-04-29 Release 5.5 accounting
CG11367 2008-08-15 Release 5.9 accounting
CG11367 2008-12-18 5.12 accounting

Clone Sequence Records

LD47277.complete Sequence

1820 bp (1820 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052011

> LD47277.complete
GAACTCGAAGTTCCAGTCGGAACGTCAACGTCGAGTGGGCAGTCGTACGT
CGATTGTTGAGCGGCTGTGGCACATATATAAACAATAAATACAATTCGTA
ATTTTAATTGAATTAAGACAATAACAACAACGGTTTCTGGGACTCGGTTG
CCTTGCCATATGTGACACAAAGCACACACATGCGACCGTAAACTCAGAAC
TCTGTATTTGCGCGAATGTGGGTGCATAAAAGTGAAATTTCACAGCGACA
AGTGGAAAAGAAAACGGAGAAAGGCAGAGCTGTGGCCAAAAGAAAATCCT
GGTCATGTCATGCAACAATAACAACAACTATAAAAACAAAACCACGTACG
GCTATTCGAACAACAATGATACCAACTGCATCATGCAGAAGCCAGTGCCC
GCCTCCACCGCACCCGCCTTCCCTCAGCTGATCCAGGCCAGCTGTTCCAA
CGCCGTGGAGGTGGATCCACCAGACAGCATTGTGGGGGCTGCCGGCAACT
CCGAAGCTCTCTTCGCCGCCCAGCGCACACCGGACACGTCGGAGGACAGC
GAATGTGACCCGTTTCTAGCCAGTCGGAGAGCTACCCGCTCCTCCGCCAC
CACCTCTGTGCTACACAACCGGAAGCGCAACTCGTGTTGGGGACGAGCCC
ACAGCTTTCTCACCCGCAACTGGTACCTGGGCTGCTTAGTGCCCGCCACC
ATTCTAGGCGCCCTCGTCTTCATCGGATGGGCGACGCGGGACTATGCTCG
CCAATTGCTCTTTTGGATCGAAATGCAGAACGCCTGGATAACATTTGCCG
TCTACATGGGGCTCTTCGCTCTTGTCAGCTTCCCCGTGGTGGTGGGCTAC
TTCGTTCTGCTCATCACCGCCGGTTACCTGTTCGGCTGCCTGCGCGGTTG
GGTCACCGTGATCCTGGGCGCCAATATCGGCATAGCCGTGGCCCATGCCA
CCATTCGCAGCTGCCGGCACCGCATTCCCGTCCAAAGGCTGATCAAGAAT
GATACGGGACGAGCCATTCTTCGCGTCATTTCTGGCCCAAAGGCATTTCG
AGTCGTTCTCTTTACCCGACTTACCCCCATTCCCTTCGGAGTGCAGAATG
TGATATTCGGAATCAGTTCCATCAACACAAGAGACTACCATGTGGCCACG
CTGATTGGTTTGCTGCCAGCCCAAACCATCAATGTTTACTTGGGTTCCAC
GCTAAGGTCCATGCATGAAGTGCTCAGTGATAACGATACCAAACTGACGG
GGTATATCAGCTTCCTGTTTGAGGTAATTTGCGGCGTGGCCTTGATGTTC
TGGGTATTGCAGAAGGCCAGAAAGGAGCTGTCTGAGACGTTGCTGAGCGC
TGATTACAATAACGAGGGCAAGCATCCCGACGTACAAGTTTAACAGGAGC
CACTTGGGGAACGGAGTCCTACAGGACCCCCAGCCAAAGAGAATCTCCTG
GACTTTAACAGAAGACTGCGTTTTTGCATTACCTAGTTCAAACTAAGGCG
GTTTTCGAGTTGTTTTATTTATTTATGCTCAAGGCAATGCCATTGAAACC
AAACATTAAGCTAGCCTTAGCAGATACGGATTCAAATCACACTCGTTCCC
TAAAACTGTATGAGGGTGTGTCATGCTTCACATCACACATTACTTCTAAG
AATTCCTGAGATGTACATTTATAAATAAGTCAAAGCCTCGCTCAAAGACC
GCTAGCTCGAAGACTCGATTGTTGGTCATAATGCTGCTCTATAATGTTGT
TCAATTATTAGTTTGTAAGCGAATAAGCAAATAAATGAGCTCTAAAGTAC
AAAAAAAAAAAAAAAAAAAA

LD47277.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-RA 1922 CG11367-RA 97..1898 1..1802 9010 100 Plus
CG11241-RB 2136 CG11241-RB 1840..2136 1802..1506 1485 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22717010..22717997 1..988 4940 100 Plus
chr3L 24539361 chr3L 22721817..22722349 1268..1800 2650 99.8 Plus
chr3L 24539361 chr3L 22721484..22721648 1112..1276 825 100 Plus
chr3L 24539361 chr3L 22720918..22721043 986..1111 630 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:43:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22728107..22729094 1..988 4940 100 Plus
3L 28110227 3L 22732914..22733448 1268..1802 2660 99.8 Plus
3L 28110227 3L 22732581..22732745 1112..1276 825 100 Plus
3L 28110227 3L 22732015..22732140 986..1111 630 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22721207..22722194 1..988 4940 100 Plus
3L 28103327 3L 22726014..22726548 1268..1802 2660 99.8 Plus
3L 28103327 3L 22725681..22725845 1112..1276 825 100 Plus
3L 28103327 3L 22725115..22725240 986..1111 630 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:12:26 has no hits.

LD47277.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:13:05 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22717010..22717996 1..987 100 -> Plus
chr3L 22720920..22721043 988..1111 100 -> Plus
chr3L 22721484..22721645 1112..1273 100 -> Plus
chr3L 22721823..22722349 1274..1800 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:02 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1089 305..1393 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:56 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1089 305..1393 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:46:39 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1089 305..1393 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:18 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1089 305..1393 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:07 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1089 305..1393 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:08:21 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1800 1..1800 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:56 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1800 1..1800 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:46:39 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1796 5..1800 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:19 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1800 1..1800 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:07 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
CG11367-RA 1..1796 5..1800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:13:05 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22728107..22729093 1..987 100 -> Plus
3L 22732017..22732140 988..1111 100 -> Plus
3L 22732581..22732742 1112..1273 100 -> Plus
3L 22732920..22733446 1274..1800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:13:05 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22728107..22729093 1..987 100 -> Plus
3L 22732017..22732140 988..1111 100 -> Plus
3L 22732581..22732742 1112..1273 100 -> Plus
3L 22732920..22733446 1274..1800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:13:05 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22728107..22729093 1..987 100 -> Plus
3L 22732017..22732140 988..1111 100 -> Plus
3L 22732581..22732742 1112..1273 100 -> Plus
3L 22732920..22733446 1274..1800 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:46:39 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22721207..22722193 1..987 100 -> Plus
arm_3L 22725117..22725240 988..1111 100 -> Plus
arm_3L 22725681..22725842 1112..1273 100 -> Plus
arm_3L 22726020..22726546 1274..1800 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:10 Download gff for LD47277.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22721207..22722193 1..987 100 -> Plus
3L 22725117..22725240 988..1111 100 -> Plus
3L 22725681..22725842 1112..1273 100 -> Plus
3L 22726020..22726546 1274..1800 100   Plus

LD47277.pep Sequence

Translation from 304 to 1392

> LD47277.pep
MSCNNNNNYKNKTTYGYSNNNDTNCIMQKPVPASTAPAFPQLIQASCSNA
VEVDPPDSIVGAAGNSEALFAAQRTPDTSEDSECDPFLASRRATRSSATT
SVLHNRKRNSCWGRAHSFLTRNWYLGCLVPATILGALVFIGWATRDYARQ
LLFWIEMQNAWITFAVYMGLFALVSFPVVVGYFVLLITAGYLFGCLRGWV
TVILGANIGIAVAHATIRSCRHRIPVQRLIKNDTGRAILRVISGPKAFRV
VLFTRLTPIPFGVQNVIFGISSINTRDYHVATLIGLLPAQTINVYLGSTL
RSMHEVLSDNDTKLTGYISFLFEVICGVALMFWVLQKARKELSETLLSAD
YNNEGKHPDVQV*

LD47277.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10994-PA 344 GF10994-PA 38..344 45..362 1196 70 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16275-PA 364 GG16275-PA 20..364 14..362 1659 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16763-PA 384 GH16763-PA 31..384 28..362 1103 61.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-PA 362 CG11367-PA 1..362 1..362 1895 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13424-PA 361 GI13424-PA 30..361 35..362 1089 63.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18104-PA 374 GL18104-PA 10..374 4..362 1278 67.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10948-PA 374 GA10948-PA 10..374 4..362 1277 67.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22468-PA 394 GM22468-PA 302..394 270..362 493 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15049-PA 394 GD15049-PA 302..394 270..362 493 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11783-PA 356 GJ11783-PA 30..356 33..362 1116 64.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20328-PA 378 GK20328-PA 13..378 15..362 1153 60.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22635-PA 361 GE22635-PA 10..361 2..362 1651 87.8 Plus
Dyak\GE14675-PA 60 GE14675-PA 1..60 303..362 317 95 Plus

LD47277.hyp Sequence

Translation from 304 to 1392

> LD47277.hyp
MSCNNNNNYKNKTTYGYSNNNDTNCIMQKPVPASTAPAFPQLIQASCSNA
VEVDPPDSIVGAAGNSEALFAAQRTPDTSEDSECDPFLASRRATRSSATT
SVLHNRKRNSCWGRAHSFLTRNWYLGCLVPATILGALVFIGWATRDYARQ
LLFWIEMQNAWITFAVYMGLFALVSFPVVVGYFVLLITAGYLFGCLRGWV
TVILGANIGIAVAHATIRSCRHRIPVQRLIKNDTGRAILRVISGPKAFRV
VLFTRLTPIPFGVQNVIFGISSINTRDYHVATLIGLLPAQTINVYLGSTL
RSMHEVLSDNDTKLTGYISFLFEVICGVALMFWVLQKARKELSETLLSAD
YNNEGKHPDVQV*

LD47277.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11367-PA 362 CG11367-PA 1..362 1..362 1895 100 Plus