Clone LD47312 Report

Search the DGRC for LD47312

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:473
Well:12
Vector:pOT2
Associated Gene/TranscriptCG9705-RA
Protein status:LD47312.pep: gold
Preliminary Size:1716
Sequenced Size:1559

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9705 2001-01-01 Release 2 assignment
CG9705 2001-09-19 Blastp of sequenced clone
CG9705 2003-01-01 Sim4 clustering to Release 3
CG9705 2008-04-29 Release 5.5 accounting
CG9705 2008-08-15 Release 5.9 accounting
CG9705 2008-12-18 5.12 accounting

Clone Sequence Records

LD47312.complete Sequence

1559 bp (1559 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060441

> LD47312.complete
CTTTGACGCCTCCGCCGCCATTCGTTAAAAAACTGAAATTCTTAAAAAGC
GCGCATCAAGCCGGTGTAATAATTGATAAAAAAGTTTAAAAAAATCCCAG
ATTCCAAAGTTGATAAAAGTCATACCGCGCAGGACTGATTTAGGGGGTAC
AAATAACATTGGCAACCGGCGTTTCGCACAGCGGTAAAATTTGCATCAGT
GTGTGGGTGTTTCGCAAAAAAAAAAGAAGCTAAGCCAGGATTTTTGGATT
GCCAATTATCAAGGTGCTAGGAAAGAGGGCGTGAAGTTGTCGGTAAGCTG
ACCGAGTACACGTGAATTAAGTGCAACGCAATTTGCTGACTGACTAACCC
GCCCCCCGTGGCCTTGAACTCGACAGACTTGGCTGCCGTCCACTCACCCA
CAAACACACATACGCACATATATACACACGCGCAAGCCGCTTCTACTGTC
TGAAGAGAGGAGAGGAAAAGAGCGAAGAAAGGGGAAGAACGCATAAATCG
GCAAGTAAACGAGCAGTGTAAGAAAGCCATGACCGAACCAAGGACGCCCG
AGAAGCTGCTGGCCGCCAAGCCGCCGGTTTTACACCACAACAGCCATAGT
CCCAATGCCTCGCTGCAGCTGCCCAGTCCCATCATCACGAGGCGCACTCG
CACGGCCTCGACCTCCGCTCGGGCCTTGGAAAATCCGGTTGTGACCGGTA
TGGTGAAATCCTTCAGCCGCACCAAAGGACACGGCTTCATTACACCCAAC
GCCGGCGGAGAGGACGTTTTTTGCCACGTTTCCGACATCGAAGGTGAATA
TGTGCCCATGCCCGGGGACGAGGTCAAATACCGTCTGTGCGCCATTCCGC
CCAAGTATGAGAAGCACCAGGCCGTGCACGTGCAGATTAGCCACCTGACG
CCGGAGGTGCACCACAAGTGGGAGGAGCCATTCTATGGTGGCTCCTCGCC
CGCTAAGTAAAGCTGAAGCTTGTGGCCCTGGGAGATTTCGAAGCTCGGAA
GCGGAAAAGTGTGTTGTTAAAAGCTGAACGGCCTTCCAAGAAATTTAATT
GAGCTAGAGCACGCCACCCGAGATGAACGAAACGGAAAACCGGAACAGAA
CAATAACCATGAAAGTAAACGAAAGCACAGCAATCGAAGCAGCCAGGAAA
AAGCCGAAACCAGACCAGAACGTAATAGAATGGAACAACAGGCCTGCCAT
CCAGCCAGCCAGCGAGCAGCATCACAAGAGTTTCAATTGAACACTTAATT
AGAATTTAAGCTAAGCTATGGAAGTCAAACAAAACGCAGTCACAAATATT
GCCTTTCCCTCTGGAAGAGGGGAGAGCAACCGCAACCAGTTTCGAGTATA
TTATTAAAAGCGCGTATGTATTTGGAAATTGAAATTGTTATTCGAGAAGC
CACTAGCACAGCGCCTGCGATGCTGTGGTGCCCTGTATCAGTAATTACTT
TTAATTATAACAAAACATCTGAATGTGTTCGCGAAGCAAACAAGCAAAAT
GCTCTCAGTAATTCACTTTATTATTAAAACAGCTGCAAAACAAAAAAAAA
AAAAAAAAA

LD47312.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-RA 1708 CG9705-RA 41..1583 1..1543 7715 100 Plus
CG9705-RB 1624 CG9705-RB 332..1499 376..1543 5840 100 Plus
CG9705-RB 1624 CG9705-RB 41..332 1..292 1460 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16771239..16771995 786..1541 3675 99.3 Plus
chr3L 24539361 chr3L 16769716..16770376 1..662 3170 98.9 Plus
chr3L 24539361 chr3L 16771038..16771160 663..785 600 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16781664..16782421 786..1543 3790 100 Plus
3L 28110227 3L 16780129..16780790 1..662 3310 100 Plus
3L 28110227 3L 16781463..16781585 663..785 615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16774764..16775521 786..1543 3790 100 Plus
3L 28103327 3L 16773229..16773890 1..662 3310 100 Plus
3L 28103327 3L 16774563..16774685 663..785 615 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:47:28 has no hits.

LD47312.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:48:40 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16769716..16770376 1..662 92 -> Plus
chr3L 16771038..16771160 663..785 99 -> Plus
chr3L 16771239..16771995 786..1541 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:05 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 1..432 529..960 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:41 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 1..432 529..960 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:32 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RB 1..432 529..960 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:28:46 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 1..432 529..960 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:21:02 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RB 1..432 529..960 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:35 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 19..1559 1..1541 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:41 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 29..1569 1..1541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:32 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 30..1570 1..1541 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:28:46 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 19..1559 1..1541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:21:02 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
CG9705-RA 30..1570 1..1541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:40 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16780129..16780790 1..662 100 -> Plus
3L 16781463..16781585 663..785 100 -> Plus
3L 16781664..16782419 786..1541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:40 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16780129..16780790 1..662 100 -> Plus
3L 16781463..16781585 663..785 100 -> Plus
3L 16781664..16782419 786..1541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:40 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16780129..16780790 1..662 100 -> Plus
3L 16781463..16781585 663..785 100 -> Plus
3L 16781664..16782419 786..1541 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:32 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16773229..16773890 1..662 100 -> Plus
arm_3L 16774563..16774685 663..785 100 -> Plus
arm_3L 16774764..16775519 786..1541 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:20 Download gff for LD47312.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16774563..16774685 663..785 100 -> Plus
3L 16773229..16773890 1..662 100 -> Plus
3L 16774764..16775519 786..1541 100   Plus

LD47312.pep Sequence

Translation from 528 to 959

> LD47312.pep
MTEPRTPEKLLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTASTSARAL
ENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDEVK
YRLCAIPPKYEKHQAVHVQISHLTPEVHHKWEEPFYGGSSPAK*

LD47312.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23931-PA 142 GF23931-PA 1..142 1..143 696 92.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13577-PA 143 GG13577-PA 1..143 1..143 728 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16224-PA 142 GH16224-PA 1..142 1..143 650 85.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-PC 143 CG9705-PC 1..143 1..143 772 100 Plus
CG9705-PA 143 CG9705-PA 1..143 1..143 772 100 Plus
CG9705-PB 143 CG9705-PB 1..143 1..143 772 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13370-PA 142 GI13370-PA 1..142 1..143 646 85.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20690-PA 142 GL20690-PA 1..142 1..143 669 88.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21978-PA 142 GA21978-PA 1..142 1..143 669 88.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25657-PA 143 GM25657-PA 1..143 1..143 752 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14664-PA 143 GD14664-PA 1..143 1..143 752 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13199-PA 142 GJ13199-PA 1..142 1..143 654 86 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16809-PA 143 GK16809-PA 1..143 1..143 680 91 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19874-PA 143 GE19874-PA 1..143 1..143 732 96.5 Plus

LD47312.hyp Sequence

Translation from 528 to 959

> LD47312.hyp
MTEPRTPEKLLAAKPPVLHHNSHSPNASLQLPSPIITRRTRTASTSARAL
ENPVVTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDEVK
YRLCAIPPKYEKHQAVHVQISHLTPEVHHKWEEPFYGGSSPAK*

LD47312.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9705-PC 143 CG9705-PC 1..143 1..143 772 100 Plus
CG9705-PA 143 CG9705-PA 1..143 1..143 772 100 Plus
CG9705-PB 143 CG9705-PB 1..143 1..143 772 100 Plus