Clone LD47334 Report

Search the DGRC for LD47334

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:473
Well:34
Vector:pOT2
Associated Gene/TranscriptCG2685-RA
Protein status:LD47334.pep: gold
Sequenced Size:1938

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2685 2010-06-28 Manual selection by Sue Celniker

Clone Sequence Records

LD47334.complete Sequence

1938 bp assembled on 2011-02-17

GenBank Submission: BT126048.1

> LD47334.complete
CCTGCGCGTGTATCGGCCTATCGAGCTGCAAACGAATAAATAAATAAAAA
TATAAATAAATCAATTGAAAGTGATATTATAAAAGCAAATTAGGACGTTG
GGCAGGAAAAAAACGCCGGTAACAATATTGCAGCGCCGGCGTTTAGGTGA
AGTCATTCGTTTAGTTGCAGCAACAAGAAATAGCCAGCAAGATGGGACGC
CGCTCCATAAACACCACGAAGAGTGGAAAGTACATGAATCCCACGGACCA
GGCGCGCAAGGAGGCCCGCAAGAAGGAGCTCAAGAAGAACAAGAAACAGC
GCCAAATGGTGCGGGCCGCCGTTTTGAAGAACAAGGATCCTTCACAGATA
CTTGAGGAGATGGAGAAGATCGACGAGATGGAGTACAACGTTCTGCAACC
ATCGCCGCTGAACGAGAAGGTGCTGCGCGACAAGCGCAAAAAGCTGAAGG
AAACATTCGACCGCGTAATGCGACTCTATCACAATGACGAGCCGGAGCAC
TGGGCGGACCTCAAGCGCAAGGAGGTGGAGTATGAGAAGAAGCGCCTGAA
GAAGCAGCAGTACTACGAAAGCGTTAAGCACGCCCAGAGCGTCCAGATTG
ACGAAATTCCACTGCCCGCTCCGGTGTCTGCCGTGTCAGGCGGTTCTACC
GAAACGACTGGCGGATCGGTGGTTGCGGGATTCGGCGCATCCGTTGTCAT
ACGCCTTCCCCCACCGCCCATGACAATGGCACTGCCGCCTTATGCTCCAG
GCGCTCCACCAGGCGTGTCCAGAAATAGCGATTTAGCCAGCGAGGCGCAA
GTGGAGAAATCGAAGGAGAACGAGCAAAAGGATTGGCTGGGTGTCCCGCC
GGGACCGCCGCCAGATCTGTTTGCCTTTTCCGAACTCAATTCCGATGCCG
AGGGAAATACTGACTACGATGGTGAGGGCGAGGAGGAGGAGCCAGAGCCA
TTGAAGAAGGGCAAGGATAAAGAGAAGGACAAGAACAGCGAGGCCACCGA
GCCAAATAACCAAAATATCGACGACTTCATGAAGGAAATGGAGCATGTGC
ACAAGCGTAAGCATCGAAAACTGGCGGCTAAAGAGGACGAGGCCGACAAA
AAGCGGGAGGAGGACGATGGGAAAGATATAGATAAGATAGAGGAACGAAC
ATCTGACTCCGATAAGAGAACCGCCAGCAGTACGGACGATGAGGACGACG
ATGACCAGGATGAGGATGAAAATATGCCCGAAGTGCCGACCAAGCCAGCA
TCAGTCAAATCATCTACAGCGACACCCGCGCCAGCTCCTCCGACAGCGCC
CACATTGCCGACTATTCCGCTGCCACCAGCGTCGTCTGTGCCTGCGCCGC
CACAGCTGCCACACCTACCGCCAATTCCTAATCTTGGGCCACCTGGCATA
ATGTACCGACCTCCACCCATGCGACCTCCTCACCCGGGTTCCGGCTTTGG
CATACGCATGCCACCTGGACCGCCGCCAGGACCCAGGGCACCGCATGGCC
TGGGACCAATACCGCGCATGGGCATCAGGATGCCACCAGGACCGCCGCCA
GGTCTGCCTCCGCGCCTTGCGCACCACAATAAGCAGGGAGGCGGCGCAGG
TGCACCAAAGGAGTCAGCCAAGGGTGTGGCCACTATTACAGCCAAGCCAC
AAATCAGGAATCTGAGTGCGGATGTCACCCGCTTTGTACCGTCCACGTTG
CGAGTGAAGCGCGAGGATCAGCGACGCACGGCGAGGCCCAGGCATGCGGC
CAACGATGGACACCACGCCCACTCCGAGGCGCACAGCAAGCCGCCCACCA
AGGATGACGCCTATCTGCAGTTCATGAACGAGATGCAGGGCTTGCTGTAG
CACGCAAAAGGAGTCGCGTAGTGGTAGCTGAGTAGTCTAAGTCCTAGATA
AAACGTGTCATCCAAACCAATACCAAAAAAAAAAAAAA

LD47334.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2605908..2607086 1658..480 5895 100 Minus
chrX 22417052 chrX 2605572..2605840 1924..1656 1345 100 Minus
chrX 22417052 chrX 2607489..2607748 260..1 1285 99.6 Minus
chrX 22417052 chrX 2607312..2607437 381..256 630 100 Minus
chrX 22417052 chrX 2607150..2607248 479..381 495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2712092..2713270 1658..480 5895 100 Minus
X 23542271 X 2711753..2712024 1927..1656 1360 100 Minus
X 23542271 X 2713673..2713932 260..1 1285 99.6 Minus
X 23542271 X 2713496..2713621 381..256 630 100 Minus
X 23542271 X 2713334..2713432 479..381 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2720190..2721368 1658..480 5895 100 Minus
X 23527363 X 2719851..2720122 1927..1656 1360 100 Minus
X 23527363 X 2721771..2722030 260..1 1285 99.6 Minus
X 23527363 X 2721594..2721719 381..256 630 100 Minus
X 23527363 X 2721432..2721530 479..381 495 100 Minus
Blast to na_te.dros performed 2019-03-17 01:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 1937..1982 1215..1173 123 80.4 Minus

LD47334.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:42:07 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2605572..2605838 1658..1924 100 <- Minus
chrX 2605909..2607086 480..1657 100 <- Minus
chrX 2607150..2607247 382..479 100 <- Minus
chrX 2607312..2607437 256..381 100 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-17 12:01:54 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
CG2685-RA 1..1659 192..1850 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:48:45 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
CG2685-RA 1..1659 192..1850 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:07:12 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
CG2685-RA 1..1659 192..1850 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 12:01:54 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
CG2685-RA 26..1949 1..1924 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:48:45 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
CG2685-RA 29..1952 1..1924 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:07:12 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
CG2685-RA 29..1952 1..1924 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:07 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
X 2711756..2712022 1658..1924 100 <- Minus
X 2712093..2713270 480..1657 100 <- Minus
X 2713334..2713431 382..479 100 <- Minus
X 2713496..2713621 256..381 100 <- Minus
X 2713678..2713932 1..255 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:07 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
X 2711756..2712022 1658..1924 100 <- Minus
X 2712093..2713270 480..1657 100 <- Minus
X 2713334..2713431 382..479 100 <- Minus
X 2713496..2713621 256..381 100 <- Minus
X 2713678..2713932 1..255 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:07 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
X 2711756..2712022 1658..1924 100 <- Minus
X 2712093..2713270 480..1657 100 <- Minus
X 2713334..2713431 382..479 100 <- Minus
X 2713496..2713621 256..381 100 <- Minus
X 2713678..2713932 1..255 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:48:45 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2605789..2606055 1658..1924 100 <- Minus
arm_X 2606126..2607303 480..1657 100 <- Minus
arm_X 2607367..2607464 382..479 100 <- Minus
arm_X 2607529..2607654 256..381 100 <- Minus
arm_X 2607711..2607965 1..255 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:58:41 Download gff for LD47334.complete
Subject Subject Range Query Range Percent Splice Strand
X 2719854..2720120 1658..1924 100 <- Minus
X 2720191..2721368 480..1657 100 <- Minus
X 2721432..2721529 382..479 100 <- Minus
X 2721594..2721719 256..381 100 <- Minus
X 2721776..2722030 1..255 100   Minus

LD47334.pep Sequence

Translation from 191 to 1849

> LD47334.pep
MGRRSINTTKSGKYMNPTDQARKEARKKELKKNKKQRQMVRAAVLKNKDP
SQILEEMEKIDEMEYNVLQPSPLNEKVLRDKRKKLKETFDRVMRLYHNDE
PEHWADLKRKEVEYEKKRLKKQQYYESVKHAQSVQIDEIPLPAPVSAVSG
GSTETTGGSVVAGFGASVVIRLPPPPMTMALPPYAPGAPPGVSRNSDLAS
EAQVEKSKENEQKDWLGVPPGPPPDLFAFSELNSDAEGNTDYDGEGEEEE
PEPLKKGKDKEKDKNSEATEPNNQNIDDFMKEMEHVHKRKHRKLAAKEDE
ADKKREEDDGKDIDKIEERTSDSDKRTASSTDDEDDDDQDEDENMPEVPT
KPASVKSSTATPAPAPPTAPTLPTIPLPPASSVPAPPQLPHLPPIPNLGP
PGIMYRPPPMRPPHPGSGFGIRMPPGPPPGPRAPHGLGPIPRMGIRMPPG
PPPGLPPRLAHHNKQGGGAGAPKESAKGVATITAKPQIRNLSADVTRFVP
STLRVKREDQRRTARPRHAANDGHHAHSEAHSKPPTKDDAYLQFMNEMQG
LL*

LD47334.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22486-PA 561 GF22486-PA 1..294 1..295 1168 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18611-PA 549 GG18611-PA 1..549 1..552 1797 88.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11943-PA 580 GH11943-PA 1..309 1..312 1097 69.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2685-PA 552 CG2685-PA 1..552 1..552 2942 100 Plus
Bap111-PA 749 CG7055-PA 488..656 346..535 167 30.6 Plus
CG15021-PA 420 CG15021-PA 282..397 341..454 158 38.5 Plus
CG15021-PA 420 CG15021-PA 135..292 346..486 156 33.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14730-PA 467 GI14730-PA 1..467 93..552 936 57.9 Plus
Dmoj\GI14729-PA 72 GI14729-PA 1..71 1..71 365 98.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19810-PA 519 GL19810-PA 1..516 1..518 1352 70.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15430-PA 550 GA15430-PA 1..550 1..552 1490 70.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18859-PA 554 GM18859-PA 1..554 1..552 2145 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16357-PA 407 GD16357-PA 3..407 150..552 1406 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18536-PA 574 GJ18536-PA 1..574 1..552 1412 64.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16223-PA 620 GK16223-PA 1..331 1..310 1017 68 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16926-PA 549 GE16926-PA 1..549 1..552 1801 89.2 Plus

LD47334.hyp Sequence

Translation from 191 to 1849

> LD47334.hyp
MGRRSINTTKSGKYMNPTDQARKEARKKELKKNKKQRQMVRAAVLKNKDP
SQILEEMEKIDEMEYNVLQPSPLNEKVLRDKRKKLKETFDRVMRLYHNDE
PEHWADLKRKEVEYEKKRLKKQQYYESVKHAQSVQIDEIPLPAPVSAVSG
GSTETTGGSVVAGFGASVVIRLPPPPMTMALPPYAPGAPPGVSRNSDLAS
EAQVEKSKENEQKDWLGVPPGPPPDLFAFSELNSDAEGNTDYDGEGEEEE
PEPLKKGKDKEKDKNSEATEPNNQNIDDFMKEMEHVHKRKHRKLAAKEDE
ADKKREEDDGKDIDKIEERTSDSDKRTASSTDDEDDDDQDEDENMPEVPT
KPASVKSSTATPAPAPPTAPTLPTIPLPPASSVPAPPQLPHLPPIPNLGP
PGIMYRPPPMRPPHPGSGFGIRMPPGPPPGPRAPHGLGPIPRMGIRMPPG
PPPGLPPRLAHHNKQGGGAGAPKESAKGVATITAKPQIRNLSADVTRFVP
STLRVKREDQRRTARPRHAANDGHHAHSEAHSKPPTKDDAYLQFMNEMQG
LL*

LD47334.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2685-PA 552 CG2685-PA 1..552 1..552 2942 100 Plus
dalao-PA 749 CG7055-PA 488..656 346..535 167 30.6 Plus
CG15021-PA 420 CG15021-PA 282..397 341..454 158 38.5 Plus
CG15021-PA 420 CG15021-PA 135..292 346..486 156 33.8 Plus