Clone LD47384 Report

Search the DGRC for LD47384

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:473
Well:84
Vector:pOT2
Associated Gene/TranscriptRabX1-RA
Protein status:LD47384.pep: gold
Preliminary Size:1693
Sequenced Size:1624

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3870 2002-06-13 Blastp of sequenced clone
CG3870 2003-01-01 Sim4 clustering to Release 3
chrw 2008-04-29 Release 5.5 accounting
chrw 2008-08-15 Release 5.9 accounting
chrw 2008-12-18 5.12 accounting

Clone Sequence Records

LD47384.complete Sequence

1624 bp (1624 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122200

> LD47384.complete
CAACAAGCCTTCAAATTTATTAAATCTTTTATCTTTACTGCTGACTGCGC
GCTTTTAATCGCAGCGCCCGCTTTGAAAACCCCCACCGACTCCGATAAAT
TCAGTTGTGCCCAAGAAATCAGACGCAGCAGGCCGCCAAAGGGCCAATTA
CGCGCTTCCCAACCACTGGCTCTGCAAGCAACAACAACAACAGCAGCAAC
AACCACTGAGCCAACAACACATCATCTCATCCATTTTACAAAAAAAAAAA
ACGTCACTAAAGTCCACGGAAAGCGATGCGATTGAGCCGCTAATCTCGGC
GAGATGCGCGGAATCGAGGGCAAAGTGCTTGTTCTGGGCTCGCGAGGTGT
GGGCAAAACACGTTTGGTCATCCGCTACATAAAGAACACGCTGCACCGCA
AGGAAAGCGAGGTACCCACGATAGCCGTGTCCTTCTTCACGTGCAACATC
ATCCTGGACGAGGTCAAAATTAAATTGCAAATCTGGGATACAGCTGGCCA
GGAGCGGTATCGGGCGGTGGCGCCCATGTACTACAGGAATGCCAACGCCG
CCATTCTGGTGTTCGATCTAACGCAGTACAAGACATTCACGGAGATCAAG
TCGTGGATTCAGGAGCTGCACCGCAATGTCCAGGACCCGATGATACTGAC
GCTGGTGGGTAACAAGATGGACATGCAGGCGCAGCGAGCGGTCTCCCGGG
AGGAGGCCTTCGTGTTCGCCACCTCCATTGGGGCCACCTACTTCGAAACC
TCCACCGAAACGGATCAGGGACTGGAGCAAGTGTTCATATCCACTGCCCA
GGGACTGGTTCGCCTGGCAGACGAGGGCAAGAGTCCGTCGCTGCGCTCCT
TCCAGTCGACTGATTCGCTGGCCTACACCAACACCAACACTGCCTTCAGT
CACACGGTGGCCGCCCTGGCCAGGAGCTCCGGAAATGCAGCGTTCCGTCT
GCCCTACGTGGACATTGGCTTGGCGGTGGAGGGCGAGGACGTGAAGACCA
ATGGCGTGGGGCGGCTGGAAACGGCGCCGTGGAGCATCGAGCACATCGCC
CTCGGCGAGGTGGAGAGGCCCAGCTGGTGTTGCTACTAAGATCTATCAGA
TCCCCAGGATCCACATCTGTGAAAGAACCAATGTGATTTTAACAGAACCA
GACTGCAGTTCGAATATGGGCTCAAGGGCCAGCCAGCATCGTTTAAGCAA
TCAAGCAACCCAACTCCGAAAACGCAAAGACCAAAAGCAGCCGCCGCAAA
CGCAAGATGCAAACTTGGCTTGAAGCTATGTATTAGATCACTGATTAGGC
TAGATCCAGGATCCCCTCGATCCACTGACAAGGCGCTGCGACAACCGCTT
CATCATAATCTTAGTTCTTAATGACAGCTGTGTACAGCAATTGCCGCGTG
CATATTATGACTTTATACACTCGTTTCGCTCTAAGCCCATCTGACTTACC
AATCATAAGATTAACCCACAACACACAGGGAGCAGCACTCACGAAACACT
CACAAAACACTCACGAAACACTCACCCACAAGACATTAACACAAACACCA
ATTCATGTACAAAGCATTTTATACTGCATGCCTATAATAAATGTAAATGT
AATAATGTAAAAAAAAAAAAAAAA

LD47384.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
chrw-RA 2124 chrw-RA 122..1730 1..1609 8045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19406187..19407312 1606..481 5495 99.2 Minus
chr2R 21145070 chr2R 19409569..19409914 348..1 1660 99.1 Minus
chr2R 21145070 chr2R 19408413..19408548 480..345 650 98.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23519838..23520966 1609..481 5645 100 Minus
2R 25286936 2R 23523226..23523573 348..1 1740 100 Minus
2R 25286936 2R 23522059..23522194 480..345 680 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23521037..23522165 1609..481 5645 100 Minus
2R 25260384 2R 23524425..23524772 348..1 1740 100 Minus
2R 25260384 2R 23523258..23523393 480..345 680 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:10:54 has no hits.

LD47384.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:11:49 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19409571..19409914 1..346 91   Minus
chr2R 19406185..19407312 481..1608 95 <- Minus
chr2R 19408413..19408546 347..480 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:11 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
chrw-RA 1..786 304..1089 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:31 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
chrw-RA 1..786 304..1089 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:40 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 1..786 304..1089 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:21 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
chrw-RA 1..786 304..1089 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:26 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 1..786 304..1089 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:47:41 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
chrw-RA 1..1608 1..1608 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:31 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
chrw-RA 1..1608 1..1608 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:40 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 41..1648 1..1608 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:22 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
chrw-RA 1..1608 1..1608 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:26 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
RabX1-RA 41..1648 1..1608 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:49 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23519839..23520966 481..1608 100 <- Minus
2R 23522059..23522192 347..480 100 <- Minus
2R 23523228..23523573 1..346 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:49 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23519839..23520966 481..1608 100 <- Minus
2R 23522059..23522192 347..480 100 <- Minus
2R 23523228..23523573 1..346 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:49 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23519839..23520966 481..1608 100 <- Minus
2R 23522059..23522192 347..480 100 <- Minus
2R 23523228..23523573 1..346 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:40 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19407362..19408489 481..1608 100 <- Minus
arm_2R 19409582..19409715 347..480 100 <- Minus
arm_2R 19410751..19411096 1..346 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:01 Download gff for LD47384.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23524445..23524790 1..346 100   Minus
2R 23521056..23522183 481..1608 100 <- Minus
2R 23523276..23523409 347..480 100 <- Minus

LD47384.pep Sequence

Translation from 303 to 1088

> LD47384.pep
MRGIEGKVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNII
LDEVKIKLQIWDTAGQERYRAVAPMYYRNANAAILVFDLTQYKTFTEIKS
WIQELHRNVQDPMILTLVGNKMDMQAQRAVSREEAFVFATSIGATYFETS
TETDQGLEQVFISTAQGLVRLADEGKSPSLRSFQSTDSLAYTNTNTAFSH
TVAALARSSGNAAFRLPYVDIGLAVEGEDVKTNGVGRLETAPWSIEHIAL
GEVERPSWCCY*

LD47384.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11842-PA 261 GF11842-PA 1..261 1..261 1320 93.5 Plus
Dana\GF15280-PA 219 GF15280-PA 31..192 7..170 351 39 Plus
Dana\GF22152-PA 225 GF22152-PA 16..208 7..199 344 38.5 Plus
Dana\GF14883-PA 239 GF14883-PA 37..204 7..176 317 40.1 Plus
Dana\GF11067-PA 213 GF11067-PA 8..174 7..175 313 36.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20024-PA 261 GG20024-PA 1..261 1..261 1386 98.9 Plus
Dere\GG24527-PA 219 GG24527-PA 31..192 7..170 351 39 Plus
Dere\GG17497-PA 222 GG17497-PA 15..214 7..206 342 36.1 Plus
Dere\GG23219-PA 213 GG23219-PA 8..174 7..175 313 36.7 Plus
Dere\GG14761-PA 205 GG14761-PA 13..169 7..165 312 39.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20651-PA 259 GH20651-PA 1..259 1..261 1195 84.3 Plus
Dgri\GH12858-PA 229 GH12858-PA 15..168 7..161 352 42.3 Plus
Dgri\GH13785-PA 216 GH13785-PA 30..191 7..170 351 39 Plus
Dgri\GH11344-PA 243 GH11344-PA 41..208 7..176 317 40.1 Plus
Dgri\GH21751-PA 213 GH21751-PA 8..174 7..175 314 36.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
RabX1-PA 261 CG3870-PA 1..261 1..261 1332 100 Plus
Rab5-PI 219 CG3664-PI 31..215 7..195 345 36.5 Plus
Rab5-PH 219 CG3664-PH 31..215 7..195 345 36.5 Plus
Rab5-PG 219 CG3664-PG 31..215 7..195 345 36.5 Plus
Rab5-PE 219 CG3664-PE 31..215 7..195 345 36.5 Plus
Rab5-PC 219 CG3664-PC 31..215 7..195 345 36.5 Plus
Rab5-PD 219 CG3664-PD 31..215 7..195 345 36.5 Plus
Rab5-PF 219 CG3664-PF 31..215 7..195 345 36.5 Plus
Rab5-PB 219 CG3664-PB 31..215 7..195 345 36.5 Plus
Rab5-PA 219 CG3664-PA 31..215 7..195 345 36.5 Plus
Rab21-PC 222 CG17515-PC 15..203 7..195 325 36.1 Plus
Rab21-PD 222 CG17515-PD 15..203 7..195 325 36.1 Plus
Rab2-PB 213 CG3269-PB 8..174 7..175 317 36.7 Plus
Rab2-PA 213 CG3269-PA 8..174 7..175 317 36.7 Plus
Rab14-PD 215 CG4212-PD 13..180 7..176 315 39.2 Plus
Rab14-PA 215 CG4212-PA 13..180 7..176 315 39.2 Plus
Rab14-PB 239 CG4212-PB 37..204 7..176 315 39.2 Plus
Rab11-PA 214 CG5771-PA 13..178 7..174 312 37.5 Plus
Rab11-PB 214 CG5771-PB 13..178 7..174 312 37.5 Plus
Rab1-PA 205 CG3320-PA 13..169 7..165 310 39.6 Plus
Rab8-PC 207 CG8287-PC 10..169 7..168 306 38.3 Plus
Rab8-PA 207 CG8287-PA 10..169 7..168 306 38.3 Plus
Rab26-PE 410 CG34410-PE 211..375 4..168 302 36.7 Plus
Rab26-PD 410 CG34410-PD 211..375 4..168 302 36.7 Plus
Rab26-PC 410 CG34410-PC 211..375 4..168 302 36.7 Plus
Rab35-PB 201 CG9575-PB 10..163 7..163 287 37.6 Plus
Rab35-PD 201 CG9575-PD 10..163 7..163 287 37.6 Plus
Rab35-PA 201 CG9575-PA 10..163 7..163 287 37.6 Plus
Rab19-PB 219 CG7062-PP3-RB 23..189 7..173 287 38.5 Plus
Rab19-PA 219 CG7062-PA 23..189 7..173 287 38.5 Plus
Rab3-PB 220 CG7576-PB 23..175 7..161 286 36.1 Plus
Rab3-PA 220 CG7576-PA 23..175 7..161 286 36.1 Plus
Rab26-PG 388 CG34410-PG 189..353 4..168 285 34.3 Plus
Rab26-PB 388 CG34410-PB 189..353 4..168 285 34.3 Plus
Rab21-PA 189 CG17515-PA 12..170 39..195 282 36.5 Plus
RabX4-PA 213 CG31118-PA 10..168 7..166 279 37.3 Plus
Rab9Fb-PA 214 CG32670-PA 9..168 7..168 279 36.4 Plus
Rab6-PB 208 CG6601-PB 14..184 7..179 277 32.4 Plus
Rab6-PA 208 CG6601-PA 14..184 7..179 277 32.4 Plus
Rab10-PA 204 CG17060-PA 11..171 7..169 275 33.7 Plus
Rab4-PA 213 CG4921-PA 10..177 7..176 274 34.1 Plus
Rab4-PB 213 CG4921-PB 10..177 7..176 274 34.1 Plus
Rab18-PA 197 CG3129-PA 7..166 7..169 271 36.6 Plus
Rab30-PD 223 CG9100-PD 9..220 7..213 264 32.1 Plus
Rab30-PC 223 CG9100-PC 9..220 7..213 264 32.1 Plus
Rab30-PB 223 CG9100-PB 9..220 7..213 264 32.1 Plus
Rab30-PA 223 CG9100-PA 9..220 7..213 264 32.1 Plus
Rab35-PC 190 CG9575-PC 8..152 16..163 261 37.2 Plus
Rab8-PB 172 CG8287-PB 8..134 42..168 258 40.2 Plus
Rab27-PC 230 CG14791-PC 13..168 7..159 247 36.5 Plus
RabX2-PA 195 CG2885-PA 9..168 7..168 245 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19016-PA 259 GI19016-PA 1..259 1..261 1172 83.5 Plus
Dmoj\GI17188-PA 216 GI17188-PA 30..191 7..170 351 39 Plus
Dmoj\GI14949-PA 222 GI14949-PA 15..213 7..206 347 35.3 Plus
Dmoj\GI12880-PA 243 GI12880-PA 41..208 7..176 317 40.1 Plus
Dmoj\GI19298-PA 213 GI19298-PA 8..174 7..175 313 36.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17555-PA 261 GL17555-PA 1..261 1..261 1342 95.4 Plus
Dper\GL19400-PA 218 GL19400-PA 30..191 7..170 351 39 Plus
Dper\GL16463-PA 223 GL16463-PA 15..203 7..192 347 36.6 Plus
Dper\GL21269-PA 239 GL21269-PA 37..204 7..176 318 40.1 Plus
Dper\GL27164-PA 205 GL27164-PA 13..169 7..165 312 39.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17740-PA 261 GA17740-PA 1..261 1..261 1346 95.8 Plus
Dpse\GA17598-PA 218 GA17598-PA 30..191 7..170 351 39 Plus
Dpse\GA22589-PA 224 GA22589-PA 15..203 7..192 347 36.6 Plus
Dpse\GA18036-PA 239 GA18036-PA 37..204 7..176 318 40.1 Plus
Dpse\GA17362-PA 205 GA17362-PA 13..169 7..165 312 39.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15536-PA 261 GM15536-PA 1..261 1..261 1392 99.2 Plus
Dsec\GM18235-PA 219 GM18235-PA 31..192 7..170 351 39 Plus
Dsec\GM10050-PA 224 GM10050-PA 15..168 7..161 336 39.7 Plus
Dsec\GM15560-PA 239 GM15560-PA 37..204 7..176 317 40.1 Plus
Dsec\GM15089-PA 205 GM15089-PA 13..169 7..165 312 39.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25040-PA 259 GD25040-PA 1..259 1..261 1118 84.7 Plus
Dsim\GD22841-PA 219 GD22841-PA 31..192 7..170 351 39 Plus
Dsim\GD23961-PA 239 GD23961-PA 37..204 7..176 314 40.1 Plus
Dsim\GD10420-PA 213 GD10420-PA 8..174 7..175 313 36.7 Plus
Dsim\GD19996-PA 205 GD19996-PA 13..169 7..165 312 39.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19978-PA 260 GJ19978-PA 1..260 1..261 1155 82.8 Plus
Dvir\GJ22226-PA 216 GJ22226-PA 30..191 7..170 351 39 Plus
Dvir\GJ18919-PA 229 GJ18919-PA 15..168 7..161 351 41.7 Plus
Dvir\GJ18183-PA 236 GJ18183-PA 34..201 7..176 317 40.1 Plus
Dvir\GJ22175-PA 213 GJ22175-PA 8..174 7..175 314 36.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23050-PA 262 GK23050-PA 1..262 1..261 1259 88.9 Plus
Dwil\GK14984-PA 220 GK14984-PA 26..192 2..170 350 37.9 Plus
Dwil\GK20025-PA 230 GK20025-PA 15..168 7..161 348 41.7 Plus
Dwil\GK15003-PA 223 GK15003-PA 15..168 7..161 339 40.4 Plus
Dwil\GK18273-PA 243 GK18273-PA 41..208 7..176 317 40.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11561-PA 261 GE11561-PA 1..261 1..261 1386 98.9 Plus
Dyak\GE15124-PA 219 GE15124-PA 31..192 7..170 351 39 Plus
Dyak\GE15254-PA 222 GE15254-PA 15..202 7..194 344 36.8 Plus
Dyak\GE19031-PA 239 GE19031-PA 37..204 7..176 318 40.1 Plus
Dyak\GE19072-PA 213 GE19072-PA 8..174 7..175 313 36.7 Plus

LD47384.hyp Sequence

Translation from 303 to 1088

> LD47384.hyp
MRGIEGKVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNII
LDEVKIKLQIWDTAGQERYRAVAPMYYRNANAAILVFDLTQYKTFTEIKS
WIQELHRNVQDPMILTLVGNKMDMQAQRAVSREEAFVFATSIGATYFETS
TETDQGLEQVFISTAQGLVRLADEGKSPSLRSFQSTDSLAYTNTNTAFSH
TVAALARSSGNAAFRLPYVDIGLAVEGEDVKTNGVGRLETAPWSIEHIAL
GEVERPSWCCY*

LD47384.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
RabX1-PA 261 CG3870-PA 1..261 1..261 1332 100 Plus
Rab5-PI 219 CG3664-PI 31..215 7..195 345 36.5 Plus
Rab5-PH 219 CG3664-PH 31..215 7..195 345 36.5 Plus
Rab5-PG 219 CG3664-PG 31..215 7..195 345 36.5 Plus
Rab5-PE 219 CG3664-PE 31..215 7..195 345 36.5 Plus