BDGP Sequence Production Resources |
Search the DGRC for LD47410
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 474 |
Well: | 10 |
Vector: | pOT2 |
Associated Gene/Transcript | Jabba-RB |
Protein status: | LD47410.pep: gold |
Preliminary Size: | 1417 |
Sequenced Size: | 1328 |
Gene | Date | Evidence |
---|---|---|
CG15092 | 2001-01-01 | Release 2 assignment |
CG15092 | 2001-10-10 | Blastp of sequenced clone |
CG15092 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15092 | 2008-04-29 | Release 5.5 accounting |
CG42351 | 2008-08-15 | Release 5.9 accounting |
CG42351 | 2008-12-18 | 5.12 accounting |
1328 bp (1328 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061518
> LD47410.complete GGAGTTGTGCAGCCGGTAGATCGTTTCTCCAGGATTTCAAGGCAGATTTG GAAGAAAGTTCTGCCAAAGTGTTTTTTATTATATCCAAAAATCTTCTAGT AACTGCATTTTTTGGGCAAACTATCGGCTGGTACGAGAGTTTAAAAGAAG GCCTATAGAATTGCACAAAATAGCGTGAGAAAGGCAATCGAAAAGACCGA ATCAGCAAGATGGCACAGGAGACGAAGACCGTGGCGACAGCCAAAGACCA GAACCAACGAGACCATATCGACGAGGAAGAAGTCATCGAACTCCACGAGT CACGCAGCTTTTACGATCGGGTTCGCGAACAGGCGGAGCGATTTGCTAGC ACACGAGTTGGCCAATTCGTGATCGAACGGGCTGATAAAGCGCTGGCCAT GATCGAGGATACTGCCAAGTGGAGTCTTCCGCAAGACAAGTCTTCTGCTC CCTTGGAACGCCCCCTGCCTTGGGCTCCATTCCTGATGCTCATCGTCCTG CTGCGGCTCACACGCATTTGGTTATCGGTTGGCGCCCTGATGATCGGCAA TGGTCCAATATCTCCTACGGATATGGTATACTTTATACAGACTAGACGCC GCAAGCTGCGGGCCATTCGGGTTCATGGCCTAAAGGTGATGAGACGGCGC CAGCAGGAGGTGTCCTATGGCAGTGGCAAGGGTATGACCCAGAAGCTCAA TCAGTGGTTTTCCCGAGCCATGTGCCGTCCAGGAGTTCAGCAGGATAGCA GCAGTCGCCGGGTGTTTGTCCGCCATTCGGAGCAGGGTTTAAGCAATTTC GTAGTTAAGCGCCCTCGAGAGGAGGACTGCAATGCCGATGCCGACCTGAC CATCGACCAAATGCTGGCCAAGTATGCCAACGAGAATTCCGAAGATGACT CCGACTTTGTGCCCAATGAGGAGGAGGAGGAGGAGGAAAGCAGCAGCAGC AGCGGGGAAAGCGAATCCGAATCCGGCTCCAGCGAAGGAATAAGCAGCGG CGAGGTGGATGAGGTTGTCAGCCAGCCCAAGCAGAAGTCAGCTGGAGCGG TGGTGGAAAACGGAGTGCACAAGGCCGAGGAGAAGGAAAATGATAAGGGA AAACTGAACATAACGACAACCAGCAATGGCAACAACGACAAGGAGCAGGC GGATGTTGGTAATGGACATTGAACATTATTAAGACTCTCGTGCGTAGCCC CCTAAGTCTAGGTTAACTCCAAGTATCGATTATCGAATTAAGCGTTGATG AAAACTGAACTTGAAACGTTGTCATGAAATACAATACAATACCGATACAA CAATAAAAACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 14646057..14646409 | 786..434 | 1690 | 98.6 | Minus |
chr2R | 21145070 | chr2R | 14645416..14645697 | 1305..1024 | 1395 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 14646502..14646738 | 435..199 | 1170 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 14645755..14645997 | 1025..783 | 1155 | 98.4 | Minus |
chr2R | 21145070 | chr2R | 14647979..14648176 | 199..1 | 900 | 98 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 18758943..18759295 | 786..434 | 1765 | 100 | Minus |
2R | 25286936 | 2R | 18758304..18758585 | 1305..1024 | 1410 | 100 | Minus |
2R | 25286936 | 2R | 18758641..18758883 | 1025..783 | 1215 | 100 | Minus |
2R | 25286936 | 2R | 18759387..18759623 | 435..199 | 1185 | 100 | Minus |
2R | 25286936 | 2R | 18760865..18761063 | 199..1 | 995 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 18760142..18760494 | 786..434 | 1765 | 100 | Minus |
2R | 25260384 | 2R | 18759503..18759784 | 1305..1024 | 1410 | 100 | Minus |
2R | 25260384 | 2R | 18759840..18760082 | 1025..783 | 1215 | 100 | Minus |
2R | 25260384 | 2R | 18760586..18760822 | 435..199 | 1185 | 100 | Minus |
2R | 25260384 | 2R | 18762064..18762262 | 199..1 | 995 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 14647979..14648176 | 1..199 | 97 | Minus | |
chr2R | 14646058..14646407 | 436..785 | 98 | <- | Minus |
chr2R | 14646502..14646737 | 200..435 | 99 | <- | Minus |
chr2R | 14645413..14645695 | 1026..1310 | 98 | <- | Minus |
chr2R | 14645755..14645994 | 786..1025 | 90 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42351-RB | 1..963 | 210..1172 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42351-RB | 1..963 | 210..1172 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jabba-RB | 1..963 | 210..1172 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42351-RB | 1..963 | 210..1172 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jabba-RB | 1..963 | 210..1172 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42351-RB | 10..1317 | 1..1310 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42351-RB | 10..1313 | 1..1304 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jabba-RB | 20..1323 | 1..1304 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42351-RB | 10..1317 | 1..1310 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jabba-RB | 20..1323 | 1..1304 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18759387..18759622 | 200..435 | 100 | <- | Minus |
2R | 18758944..18759293 | 436..785 | 100 | <- | Minus |
2R | 18758301..18758583 | 1026..1310 | 98 | <- | Minus |
2R | 18758641..18758880 | 786..1025 | 100 | <- | Minus |
2R | 18760865..18761063 | 1..199 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18759387..18759622 | 200..435 | 100 | <- | Minus |
2R | 18758944..18759293 | 436..785 | 100 | <- | Minus |
2R | 18758301..18758583 | 1026..1310 | 98 | <- | Minus |
2R | 18758641..18758880 | 786..1025 | 100 | <- | Minus |
2R | 18760865..18761063 | 1..199 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18759387..18759622 | 200..435 | 100 | <- | Minus |
2R | 18758944..18759293 | 436..785 | 100 | <- | Minus |
2R | 18758301..18758583 | 1026..1310 | 98 | <- | Minus |
2R | 18758641..18758880 | 786..1025 | 100 | <- | Minus |
2R | 18760865..18761063 | 1..199 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 14645806..14646088 | 1026..1310 | 98 | <- | Minus |
arm_2R | 14646146..14646385 | 786..1025 | 100 | <- | Minus |
arm_2R | 14646449..14646798 | 436..785 | 100 | <- | Minus |
arm_2R | 14646892..14647127 | 200..435 | 100 | <- | Minus |
arm_2R | 14648370..14648568 | 1..199 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18759500..18759782 | 1026..1310 | 98 | <- | Minus |
2R | 18759840..18760079 | 786..1025 | 100 | <- | Minus |
2R | 18760143..18760492 | 436..785 | 100 | <- | Minus |
2R | 18760586..18760821 | 200..435 | 100 | <- | Minus |
2R | 18762064..18762262 | 1..199 | 100 | Minus |
Translation from 209 to 1171
> LD47410.hyp MAQETKTVATAKDQNQRDHIDEEEVIELHESRSFYDRVREQAERFASTRV GQFVIERADKALAMIEDTAKWSLPQDKSSAPLERPLPWAPFLMLIVLLRL TRIWLSVGALMIGNGPISPTDMVYFIQTRRRKLRAIRVHGLKVMRRRQQE VSYGSGKGMTQKLNQWFSRAMCRPGVQQDSSSRRVFVRHSEQGLSNFVVK RPREEDCNADADLTIDQMLAKYANENSEDDSDFVPNEEEEEEESSSSSGE SESESGSSEGISSGEVDEVVSQPKQKSAGAVVENGVHKAEEKENDKGKLN ITTTSNGNNDKEQADVGNGH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Jabba-PB | 320 | CG15092-PA | 1..320 | 1..320 | 1633 | 100 | Plus |
Jabba-PI | 406 | CG42351-PI | 1..318 | 1..318 | 1614 | 99.7 | Plus |
Jabba-PD | 367 | CG42351-PD | 1..316 | 1..316 | 1607 | 100 | Plus |
Jabba-PH | 388 | CG42351-PH | 1..316 | 1..316 | 1607 | 100 | Plus |
Jabba-PG | 438 | CG42351-PG | 1..316 | 1..316 | 1607 | 100 | Plus |
Translation from 209 to 1171
> LD47410.pep MAQETKTVATAKDQNQRDHIDEEEVIELHESRSFYDRVREQAERFASTRV GQFVIERADKALAMIEDTAKWSLPQDKSSAPLERPLPWAPFLMLIVLLRL TRIWLSVGALMIGNGPISPTDMVYFIQTRRRKLRAIRVHGLKVMRRRQQE VSYGSGKGMTQKLNQWFSRAMCRPGVQQDSSSRRVFVRHSEQGLSNFVVK RPREEDCNADADLTIDQMLAKYANENSEDDSDFVPNEEEEEEESSSSSGE SESESGSSEGISSGEVDEVVSQPKQKSAGAVVENGVHKAEEKENDKGKLN ITTTSNGNNDKEQADVGNGH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13755-PA | 342 | GF13755-PA | 1..342 | 1..320 | 1116 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20947-PA | 325 | GG20947-PA | 1..325 | 1..320 | 1350 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19801-PA | 275 | GH19801-PA | 1..271 | 1..270 | 797 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Jabba-PB | 320 | CG15092-PA | 1..320 | 1..320 | 1633 | 100 | Plus |
Jabba-PI | 406 | CG42351-PI | 1..318 | 1..318 | 1614 | 99.7 | Plus |
Jabba-PG | 438 | CG42351-PG | 1..316 | 1..316 | 1607 | 100 | Plus |
Jabba-PH | 388 | CG42351-PH | 1..316 | 1..316 | 1607 | 100 | Plus |
Jabba-PE | 438 | CG42351-PE | 1..316 | 1..316 | 1607 | 100 | Plus |
Jabba-PD | 367 | CG42351-PD | 1..316 | 1..316 | 1607 | 100 | Plus |
Jabba-PC | 560 | CG34020-PA | 1..316 | 1..316 | 1607 | 100 | Plus |
Jabba-PF | 537 | CG42351-PF | 1..313 | 1..316 | 1576 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20342-PA | 632 | GI20342-PA | 1..248 | 1..240 | 763 | 64.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11307-PA | 332 | GL11307-PA | 1..332 | 1..320 | 1167 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13483-PA | 332 | GA13483-PA | 1..332 | 1..320 | 1164 | 68.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19877-PA | 308 | GM19877-PA | 1..229 | 1..229 | 1209 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25360-PA | 320 | GD25360-PA | 1..320 | 1..320 | 1652 | 96.6 | Plus |
Dsim\GD20176-PA | 130 | GD20176-PA | 1..130 | 122..251 | 606 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22065-PA | 320 | GJ22065-PA | 1..320 | 1..320 | 849 | 61 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20705-PA | 323 | GK20705-PA | 1..323 | 1..320 | 934 | 59.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13885-PA | 322 | GE13885-PA | 1..322 | 1..320 | 1464 | 92.9 | Plus |