Clone LD47410 Report

Search the DGRC for LD47410

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:474
Well:10
Vector:pOT2
Associated Gene/TranscriptJabba-RB
Protein status:LD47410.pep: gold
Preliminary Size:1417
Sequenced Size:1328

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15092 2001-01-01 Release 2 assignment
CG15092 2001-10-10 Blastp of sequenced clone
CG15092 2003-01-01 Sim4 clustering to Release 3
CG15092 2008-04-29 Release 5.5 accounting
CG42351 2008-08-15 Release 5.9 accounting
CG42351 2008-12-18 5.12 accounting

Clone Sequence Records

LD47410.complete Sequence

1328 bp (1328 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061518

> LD47410.complete
GGAGTTGTGCAGCCGGTAGATCGTTTCTCCAGGATTTCAAGGCAGATTTG
GAAGAAAGTTCTGCCAAAGTGTTTTTTATTATATCCAAAAATCTTCTAGT
AACTGCATTTTTTGGGCAAACTATCGGCTGGTACGAGAGTTTAAAAGAAG
GCCTATAGAATTGCACAAAATAGCGTGAGAAAGGCAATCGAAAAGACCGA
ATCAGCAAGATGGCACAGGAGACGAAGACCGTGGCGACAGCCAAAGACCA
GAACCAACGAGACCATATCGACGAGGAAGAAGTCATCGAACTCCACGAGT
CACGCAGCTTTTACGATCGGGTTCGCGAACAGGCGGAGCGATTTGCTAGC
ACACGAGTTGGCCAATTCGTGATCGAACGGGCTGATAAAGCGCTGGCCAT
GATCGAGGATACTGCCAAGTGGAGTCTTCCGCAAGACAAGTCTTCTGCTC
CCTTGGAACGCCCCCTGCCTTGGGCTCCATTCCTGATGCTCATCGTCCTG
CTGCGGCTCACACGCATTTGGTTATCGGTTGGCGCCCTGATGATCGGCAA
TGGTCCAATATCTCCTACGGATATGGTATACTTTATACAGACTAGACGCC
GCAAGCTGCGGGCCATTCGGGTTCATGGCCTAAAGGTGATGAGACGGCGC
CAGCAGGAGGTGTCCTATGGCAGTGGCAAGGGTATGACCCAGAAGCTCAA
TCAGTGGTTTTCCCGAGCCATGTGCCGTCCAGGAGTTCAGCAGGATAGCA
GCAGTCGCCGGGTGTTTGTCCGCCATTCGGAGCAGGGTTTAAGCAATTTC
GTAGTTAAGCGCCCTCGAGAGGAGGACTGCAATGCCGATGCCGACCTGAC
CATCGACCAAATGCTGGCCAAGTATGCCAACGAGAATTCCGAAGATGACT
CCGACTTTGTGCCCAATGAGGAGGAGGAGGAGGAGGAAAGCAGCAGCAGC
AGCGGGGAAAGCGAATCCGAATCCGGCTCCAGCGAAGGAATAAGCAGCGG
CGAGGTGGATGAGGTTGTCAGCCAGCCCAAGCAGAAGTCAGCTGGAGCGG
TGGTGGAAAACGGAGTGCACAAGGCCGAGGAGAAGGAAAATGATAAGGGA
AAACTGAACATAACGACAACCAGCAATGGCAACAACGACAAGGAGCAGGC
GGATGTTGGTAATGGACATTGAACATTATTAAGACTCTCGTGCGTAGCCC
CCTAAGTCTAGGTTAACTCCAAGTATCGATTATCGAATTAAGCGTTGATG
AAAACTGAACTTGAAACGTTGTCATGAAATACAATACAATACCGATACAA
CAATAAAAACAAAAAAAAAAAAAAAAAA

LD47410.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42351-RB 1486 CG42351-RB 145..1449 1..1305 6525 100 Plus
CG42351.a 1869 CG42351.a 145..1302 1..1158 5790 100 Plus
CG42351-RD 1660 CG42351-RD 58..1215 1..1158 5790 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14646057..14646409 786..434 1690 98.6 Minus
chr2R 21145070 chr2R 14645416..14645697 1305..1024 1395 99.6 Minus
chr2R 21145070 chr2R 14646502..14646738 435..199 1170 99.6 Minus
chr2R 21145070 chr2R 14645755..14645997 1025..783 1155 98.4 Minus
chr2R 21145070 chr2R 14647979..14648176 199..1 900 98 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18758943..18759295 786..434 1765 100 Minus
2R 25286936 2R 18758304..18758585 1305..1024 1410 100 Minus
2R 25286936 2R 18758641..18758883 1025..783 1215 100 Minus
2R 25286936 2R 18759387..18759623 435..199 1185 100 Minus
2R 25286936 2R 18760865..18761063 199..1 995 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18760142..18760494 786..434 1765 100 Minus
2R 25260384 2R 18759503..18759784 1305..1024 1410 100 Minus
2R 25260384 2R 18759840..18760082 1025..783 1215 100 Minus
2R 25260384 2R 18760586..18760822 435..199 1185 100 Minus
2R 25260384 2R 18762064..18762262 199..1 995 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:12:34 has no hits.

LD47410.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:13:36 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14647979..14648176 1..199 97   Minus
chr2R 14646058..14646407 436..785 98 <- Minus
chr2R 14646502..14646737 200..435 99 <- Minus
chr2R 14645413..14645695 1026..1310 98 <- Minus
chr2R 14645755..14645994 786..1025 90 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:14 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
CG42351-RB 1..963 210..1172 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:03 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
CG42351-RB 1..963 210..1172 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:03:13 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
Jabba-RB 1..963 210..1172 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:52 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
CG42351-RB 1..963 210..1172 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:46 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
Jabba-RB 1..963 210..1172 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:17 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
CG42351-RB 10..1317 1..1310 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:03 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
CG42351-RB 10..1313 1..1304 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:03:13 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
Jabba-RB 20..1323 1..1304 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:52 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
CG42351-RB 10..1317 1..1310 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:46 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
Jabba-RB 20..1323 1..1304 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:36 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18759387..18759622 200..435 100 <- Minus
2R 18758944..18759293 436..785 100 <- Minus
2R 18758301..18758583 1026..1310 98 <- Minus
2R 18758641..18758880 786..1025 100 <- Minus
2R 18760865..18761063 1..199 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:36 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18759387..18759622 200..435 100 <- Minus
2R 18758944..18759293 436..785 100 <- Minus
2R 18758301..18758583 1026..1310 98 <- Minus
2R 18758641..18758880 786..1025 100 <- Minus
2R 18760865..18761063 1..199 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:36 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18759387..18759622 200..435 100 <- Minus
2R 18758944..18759293 436..785 100 <- Minus
2R 18758301..18758583 1026..1310 98 <- Minus
2R 18758641..18758880 786..1025 100 <- Minus
2R 18760865..18761063 1..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:03:13 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14645806..14646088 1026..1310 98 <- Minus
arm_2R 14646146..14646385 786..1025 100 <- Minus
arm_2R 14646449..14646798 436..785 100 <- Minus
arm_2R 14646892..14647127 200..435 100 <- Minus
arm_2R 14648370..14648568 1..199 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:04 Download gff for LD47410.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18759500..18759782 1026..1310 98 <- Minus
2R 18759840..18760079 786..1025 100 <- Minus
2R 18760143..18760492 436..785 100 <- Minus
2R 18760586..18760821 200..435 100 <- Minus
2R 18762064..18762262 1..199 100   Minus

LD47410.hyp Sequence

Translation from 209 to 1171

> LD47410.hyp
MAQETKTVATAKDQNQRDHIDEEEVIELHESRSFYDRVREQAERFASTRV
GQFVIERADKALAMIEDTAKWSLPQDKSSAPLERPLPWAPFLMLIVLLRL
TRIWLSVGALMIGNGPISPTDMVYFIQTRRRKLRAIRVHGLKVMRRRQQE
VSYGSGKGMTQKLNQWFSRAMCRPGVQQDSSSRRVFVRHSEQGLSNFVVK
RPREEDCNADADLTIDQMLAKYANENSEDDSDFVPNEEEEEEESSSSSGE
SESESGSSEGISSGEVDEVVSQPKQKSAGAVVENGVHKAEEKENDKGKLN
ITTTSNGNNDKEQADVGNGH*

LD47410.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
Jabba-PB 320 CG15092-PA 1..320 1..320 1633 100 Plus
Jabba-PI 406 CG42351-PI 1..318 1..318 1614 99.7 Plus
Jabba-PD 367 CG42351-PD 1..316 1..316 1607 100 Plus
Jabba-PH 388 CG42351-PH 1..316 1..316 1607 100 Plus
Jabba-PG 438 CG42351-PG 1..316 1..316 1607 100 Plus

LD47410.pep Sequence

Translation from 209 to 1171

> LD47410.pep
MAQETKTVATAKDQNQRDHIDEEEVIELHESRSFYDRVREQAERFASTRV
GQFVIERADKALAMIEDTAKWSLPQDKSSAPLERPLPWAPFLMLIVLLRL
TRIWLSVGALMIGNGPISPTDMVYFIQTRRRKLRAIRVHGLKVMRRRQQE
VSYGSGKGMTQKLNQWFSRAMCRPGVQQDSSSRRVFVRHSEQGLSNFVVK
RPREEDCNADADLTIDQMLAKYANENSEDDSDFVPNEEEEEEESSSSSGE
SESESGSSEGISSGEVDEVVSQPKQKSAGAVVENGVHKAEEKENDKGKLN
ITTTSNGNNDKEQADVGNGH*

LD47410.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13755-PA 342 GF13755-PA 1..342 1..320 1116 69.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20947-PA 325 GG20947-PA 1..325 1..320 1350 87.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19801-PA 275 GH19801-PA 1..271 1..270 797 63.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Jabba-PB 320 CG15092-PA 1..320 1..320 1633 100 Plus
Jabba-PI 406 CG42351-PI 1..318 1..318 1614 99.7 Plus
Jabba-PG 438 CG42351-PG 1..316 1..316 1607 100 Plus
Jabba-PH 388 CG42351-PH 1..316 1..316 1607 100 Plus
Jabba-PE 438 CG42351-PE 1..316 1..316 1607 100 Plus
Jabba-PD 367 CG42351-PD 1..316 1..316 1607 100 Plus
Jabba-PC 560 CG34020-PA 1..316 1..316 1607 100 Plus
Jabba-PF 537 CG42351-PF 1..313 1..316 1576 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20342-PA 632 GI20342-PA 1..248 1..240 763 64.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11307-PA 332 GL11307-PA 1..332 1..320 1167 68.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13483-PA 332 GA13483-PA 1..332 1..320 1164 68.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19877-PA 308 GM19877-PA 1..229 1..229 1209 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25360-PA 320 GD25360-PA 1..320 1..320 1652 96.6 Plus
Dsim\GD20176-PA 130 GD20176-PA 1..130 122..251 606 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22065-PA 320 GJ22065-PA 1..320 1..320 849 61 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20705-PA 323 GK20705-PA 1..323 1..320 934 59.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13885-PA 322 GE13885-PA 1..322 1..320 1464 92.9 Plus