Clone LD47413 Report

Search the DGRC for LD47413

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:474
Well:13
Vector:pOT2
Associated Gene/TranscriptCG32075-RA
Protein status:LD47413.pep: gold
Preliminary Size:1948
Sequenced Size:1979

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6316 2001-01-01 Release 2 assignment
CG32075 2001-11-30 Blastp of sequenced clone
CG32075 2003-01-01 Sim4 clustering to Release 3
CG32075 2008-04-29 Release 5.5 accounting
CG32075 2008-08-15 Release 5.9 accounting
CG32075 2008-12-18 5.12 accounting

Clone Sequence Records

LD47413.complete Sequence

1979 bp (1979 high quality bases) assembled on 2001-11-30

GenBank Submission: AY069701

> LD47413.complete
TAGCAAAATATTAAAAAAAACTTACTGAACCGACAAGGATTAGTAAAATA
CATTAGGTTGGAAACCTTTGGCGAGTAAAATGTTTTTAAATTAAATTATT
TATTCTGCCAACTCAAAACTTGTGTAAGGAATTCATTTTTATAGCTGCAT
TTAGCTCATCACTGTTGCAACTGTTGTGATTTCGTTTGCGGTTTGTTTCG
CATGGAATTTGTTTAAATTTATTCAGACCAAATTGCCATGGCTGTTGCAA
AGAAGGAAAAATTTGAGGCAAAAAAGAAAAGCCCTGAAAAGGGAAAACAG
CAGAAAGCCAAAGTTGTTCCTGTCACACCGCCACCAAATGTAAAACAACG
AACTGTGGTCACTCCTTGGCGAGACACGCTGGAATTTAATACAACGTACA
AATGGTTGTTTGGCAAGTCCAACACACCAGCCACATGGCGTCAAGCGCTC
AGTAAAATCCGCATTTGGTGTCTGCGAAGAGGAAGTCTCTGCCCGGCAGC
GGTTTTGGCCACATCGGTGCTTGTTCAGGCGCACTTGGAGGACCAGGAGG
GCAGCGCCAAAATACAGGACACCTATGCCAGTGCCTTTACACGATTCTAC
AACTTTATGTCCTCCATTATCCAGGGACACAACATGTCCAGCATGTATGA
AACGGCCAAGGAACTGGGCCTCCAGTCGTTCATCGTTGATCTGCGCCACT
TGTGCGCCCATGGACAGGAGCTGCCGCCTGTGGAGGTGCTGAGAAACACC
TCGAATCATTGTCTGGAGTGGCTGCGCACCTACTACTGGTTGCCACACAT
GGAAACCATGTCCAATTTGGATGCTGGCAAACTGCATCGCAAGGACAAGC
TTAAGTTTGAAAAGGCTGTGACAGATCTTCTGGAGATCTACGATCTAACC
CTGGAGTGCCATATCAAGGGGGCTGAGAAACTAAAGGCCATTAGCAAGCT
AAAATCCAGTGGTGAATTCAATAAGATACGAGTCTACTCCTCCAGCAAGA
AGGCGAAGACATCGAAAGAAATTCTGAGTGCTGTGTTAGGTGATCTAAGT
GCGTTGGTCAAAAAGGAGTCATCATCGATGAAGGATCTGCTGGACATATA
TACAAAATGCCTGCTTAAAATGAAATACTTCCTTGGCGTTGGCTTGGAAA
TCGACGACAACGAGGATGTCATCATTGCAGCCACACAGGGACTCTTCCGT
CTATTGGCCGTGCAGGGATATATCGAGAAGGTTTTTTTGGCCCTAGTTCA
ACTGAGTGAAAACCAAAACGAGTCGGAGCAAAGGCGTCTGGGAGCCAGCT
ACTGGGCAAAGAAAATGTTGGAAACATTTGGGATGCTGTTCCGTATGAAG
CGCATGTACAAAGCCGAACTGGATTTGAACGATAAACTAAAACCAGCGGA
CTTTGCCACCCTAAACACGGATAAAATTTCTAAGACAATGCGCAGTCTGT
TAGTACACTCAAATGCCGATCTCTCGGTTACCCTTATTTTTGGCGACAAT
CCCAAAAAGTCCAGGTCTTTGATTTTTGATCGTGATTTTATTATGCAGCG
TGTTGATGCATTTAGCAATTACTCAGCGCCCATTCTAAAAGGATTATTAC
CGCTCGCAGATCCTCCATACACCAAGACGCAAATTGAGGATTTAACTAAA
CTCTGCGATGCACAGCTTGAAGAATTTTATGAAGAGGAAGCTATGGAAGA
AGATAGCTCTTCAGAGGAGAGCAACAATCTAGACCGTTTGGAACGATTTT
TGGAACAAGCAGCTCAAAGCAAAGAGCATACATCAGACTGGGGAGTTTGG
AAATTAGACAAGCATACCGATTGGCCCAAATGTGCATTGGGTGTGCTCCC
TTGGGCTCAATAAATACGCAGATTAATATTAAATAAAGTAATTAATAAAA
ACTAGTACTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD47413.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-RA 1959 CG32075-RA 41..1952 1..1912 9560 100 Plus
CG32075.a 1934 CG32075.a 41..1634 1..1594 7970 100 Plus
CG32075.a 1934 CG32075.a 1632..1934 1609..1911 1515 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11054340..11055339 1377..378 4925 99.5 Minus
chr3L 24539361 chr3L 11055398..11055775 378..1 1875 99.7 Minus
chr3L 24539361 chr3L 11053781..11054002 1813..1592 1095 99.5 Minus
chr3L 24539361 chr3L 11054065..11054280 1592..1377 1080 100 Minus
chr3L 24539361 chr3L 11053604..11053701 1911..1814 490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11063462..11064461 1377..378 5000 100 Minus
3L 28110227 3L 11064520..11064897 378..1 1890 100 Minus
3L 28110227 3L 11062903..11063124 1813..1592 1110 100 Minus
3L 28110227 3L 11063187..11063402 1592..1377 1080 100 Minus
3L 28110227 3L 11062725..11062823 1912..1814 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11056562..11057561 1377..378 5000 100 Minus
3L 28103327 3L 11057620..11057997 378..1 1890 100 Minus
3L 28103327 3L 11056003..11056224 1813..1592 1110 100 Minus
3L 28103327 3L 11056287..11056502 1592..1377 1080 100 Minus
3L 28103327 3L 11055825..11055923 1912..1814 495 100 Minus
Blast to na_te.dros performed 2019-03-16 01:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 2652..2701 1859..1909 117 72.5 Plus

LD47413.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:46:01 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11053648..11053701 1814..1867 100 <- Minus
chr3L 11053781..11054001 1593..1813 99 <- Minus
chr3L 11054065..11054279 1378..1592 100 <- Minus
chr3L 11054340..11055339 378..1377 99 <- Minus
chr3L 11055399..11055775 1..377 94   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:15 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 1..1626 238..1863 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:26 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 1..1626 238..1863 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:22 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 1..1626 238..1863 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:36 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 1..1626 238..1863 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:41:07 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 1..1626 238..1863 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:48 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 41..1951 1..1911 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:26 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 41..1951 1..1911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:22 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 45..1955 1..1911 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:36 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 41..1951 1..1911 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:41:07 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
CG32075-RA 45..1955 1..1911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:46:01 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11062726..11062823 1814..1911 100 <- Minus
3L 11062903..11063123 1593..1813 100 <- Minus
3L 11063187..11063401 1378..1592 100 <- Minus
3L 11063462..11064461 378..1377 100 <- Minus
3L 11064521..11064897 1..377 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:46:01 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11062726..11062823 1814..1911 100 <- Minus
3L 11062903..11063123 1593..1813 100 <- Minus
3L 11063187..11063401 1378..1592 100 <- Minus
3L 11063462..11064461 378..1377 100 <- Minus
3L 11064521..11064897 1..377 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:46:01 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11062726..11062823 1814..1911 100 <- Minus
3L 11062903..11063123 1593..1813 100 <- Minus
3L 11063187..11063401 1378..1592 100 <- Minus
3L 11063462..11064461 378..1377 100 <- Minus
3L 11064521..11064897 1..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:22 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11055826..11055923 1814..1911 100 <- Minus
arm_3L 11056003..11056223 1593..1813 100 <- Minus
arm_3L 11056287..11056501 1378..1592 100 <- Minus
arm_3L 11056562..11057561 378..1377 100 <- Minus
arm_3L 11057621..11057997 1..377 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:57 Download gff for LD47413.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11056003..11056223 1593..1813 100 <- Minus
3L 11056287..11056501 1378..1592 100 <- Minus
3L 11056562..11057561 378..1377 100 <- Minus
3L 11057621..11057997 1..377 100   Minus
3L 11055826..11055923 1814..1911 100 <- Minus

LD47413.pep Sequence

Translation from 237 to 1862

> LD47413.pep
MAVAKKEKFEAKKKSPEKGKQQKAKVVPVTPPPNVKQRTVVTPWRDTLEF
NTTYKWLFGKSNTPATWRQALSKIRIWCLRRGSLCPAAVLATSVLVQAHL
EDQEGSAKIQDTYASAFTRFYNFMSSIIQGHNMSSMYETAKELGLQSFIV
DLRHLCAHGQELPPVEVLRNTSNHCLEWLRTYYWLPHMETMSNLDAGKLH
RKDKLKFEKAVTDLLEIYDLTLECHIKGAEKLKAISKLKSSGEFNKIRVY
SSSKKAKTSKEILSAVLGDLSALVKKESSSMKDLLDIYTKCLLKMKYFLG
VGLEIDDNEDVIIAATQGLFRLLAVQGYIEKVFLALVQLSENQNESEQRR
LGASYWAKKMLETFGMLFRMKRMYKAELDLNDKLKPADFATLNTDKISKT
MRSLLVHSNADLSVTLIFGDNPKKSRSLIFDRDFIMQRVDAFSNYSAPIL
KGLLPLADPPYTKTQIEDLTKLCDAQLEEFYEEEAMEEDSSSEESNNLDR
LERFLEQAAQSKEHTSDWGVWKLDKHTDWPKCALGVLPWAQ*

LD47413.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23807-PA 545 GF23807-PA 1..545 1..541 1869 64.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13947-PA 541 GG13947-PA 1..541 1..541 2435 88 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16572-PA 501 GH16572-PA 1..499 27..538 1680 60.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-PB 541 CG32075-PB 1..541 1..541 2798 100 Plus
CG32075-PA 541 CG32075-PA 1..541 1..541 2798 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13863-PA 526 GI13863-PA 4..522 11..538 1671 59.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15742-PA 381 GL15742-PA 2..381 70..452 1070 53 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16659-PA 492 GA16659-PA 9..480 29..480 1220 49.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24782-PA 537 GM24782-PA 22..537 22..541 2470 92.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12833-PA 537 GD12833-PA 1..537 1..541 2466 92.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11724-PA 527 GJ11724-PA 1..523 1..538 1707 58.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11450-PA 537 GK11450-PA 25..537 31..539 1458 53 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20245-PA 541 GE20245-PA 1..541 1..541 2468 86.3 Plus

LD47413.hyp Sequence

Translation from 237 to 1862

> LD47413.hyp
MAVAKKEKFEAKKKSPEKGKQQKAKVVPVTPPPNVKQRTVVTPWRDTLEF
NTTYKWLFGKSNTPATWRQALSKIRIWCLRRGSLCPAAVLATSVLVQAHL
EDQEGSAKIQDTYASAFTRFYNFMSSIIQGHNMSSMYETAKELGLQSFIV
DLRHLCAHGQELPPVEVLRNTSNHCLEWLRTYYWLPHMETMSNLDAGKLH
RKDKLKFEKAVTDLLEIYDLTLECHIKGAEKLKAISKLKSSGEFNKIRVY
SSSKKAKTSKEILSAVLGDLSALVKKESSSMKDLLDIYTKCLLKMKYFLG
VGLEIDDNEDVIIAATQGLFRLLAVQGYIEKVFLALVQLSENQNESEQRR
LGASYWAKKMLETFGMLFRMKRMYKAELDLNDKLKPADFATLNTDKISKT
MRSLLVHSNADLSVTLIFGDNPKKSRSLIFDRDFIMQRVDAFSNYSAPIL
KGLLPLADPPYTKTQIEDLTKLCDAQLEEFYEEEAMEEDSSSEESNNLDR
LERFLEQAAQSKEHTSDWGVWKLDKHTDWPKCALGVLPWAQ*

LD47413.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32075-PB 541 CG32075-PB 1..541 1..541 2798 100 Plus
CG32075-PA 541 CG32075-PA 1..541 1..541 2798 100 Plus