Clone LD47422 Report

Search the DGRC for LD47422

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:474
Well:22
Vector:pOT2
Associated Gene/TranscriptCtf4-RA
Protein status:LD47422.pep: gold
Sequenced Size:2931

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13350 2003-01-01 Sim4 clustering to Release 3
CG13350 2008-04-29 Release 5.5 accounting
CG13350 2008-08-15 Release 5.9 accounting
CG13350 2008-12-18 5.12 accounting

Clone Sequence Records

LD47422.complete Sequence

2931 bp (2931 high quality bases) assembled on 2005-08-02

GenBank Submission: BT023774

> LD47422.complete
CGAGAGATCAATTGAAATTAAGCATTAAATCACATCATGAGCTTCTTGCG
CAGTGCCCTGCGCTATGCCCACACCAATGGCTACACGGGACTCCTTTACA
CTCCGCGCGGCGAGTTCATCATCACGTGCGGCACAGATGGAGACATCCGG
CACTGGACCTGCATTAGTGACGACGATCCACGCTCAAGTTGCCTGGGCGA
GTTCGTCATGTGCATAGCCCACACGGGAACCCGTTTGCTGGCCTCGACGG
ATCGGAATACGATCCATGCCTACACCTTTCCCGAGATGGACAGCGATGGC
ATCCTCATGCGATTCACGGCACCGGCTACGTGCCTCAAGGTATCCGGTGG
CTATACTGCTGCCGGCAGCGAGGATACCACTATAAAGGTGCTTAAGGGAG
ATACAGCTGGCAACGAAACGGTGCTGGAGGGGCACACTGGTCCCATTCTG
GCACTGGACTTGTTTGCGGAGCGAAAGCTGCTGGTTTCCGTGGCCGGGGA
TGGCCAACTGAAGGTGTGGAACTTCGAGGAGGGCAAGGAGCTGAAGACCA
TTGGGGGCTTGCCAAAGGTCAACAGTTTCGAGAGCGCCAGCCTGTATGGC
ACTCCGCATTTCGAGCCACAAAGCGGTGAACTTCTGGCCTATGCCGTTGA
CAACGAGATTGTGGTCCTCAACACGGCCAACTGGGAAGTGGCCTTTAAGC
TGCGCGACGACTCGGTGTCCAGTAACTACAGCTGCTGCCAGTTCTCGCCC
AATGGTGAGCGCCTGGCCGCCGGAACAACCAAGGGCGAGGTGAGCATCTT
CGATGTAAAGAAACGGAAGGCAGTAACAGTGGAGATTCCGCCAAGCGACT
GCAATGCCATAACATGCCTTGCCTGGAATCTGTCCGGAGAGGTGGAGGTG
GCCTTCTGCGATGCCACTGGCCAGCTGGGAACCGTATTTCTTGGCGATGC
AGTCGACACAGGCAACGGCGATGGATTGGTGGACGACCAAGCCGAGCTGT
TGGGCGATGACTATGAGTTTGAGGCCGGCGATGACGTGGACACTGCAGCA
GACGACGGCGATGGCGTTAGTCTGGAACAGCTTAAGCGCAAGGTGATGAA
CTTTGCGGATCCCGTAGATCACGATGACGCCTCCAACCAATCCCTGGACA
GCAGTAGCCGAACTGTACCTGCACCCGTTGCCCCGCAAATCAAGCTCTTC
AAGCAGCAGACGGCCTTTCAGCCCAGTGCCACACCGGCCGATCTAGAGCA
TCGCTACATGGCATGGAATGATGTGGGCATTGTTACCGCCCATGTGGAGC
CCTCAGGCGATAGCTCCATCGATGTGGAGTTCCACGACGCTAGTATTCAC
CACGCTCTACACATTAGTAACTACAATCAGCACAATTTGGCCAGTGTGAG
CAGTGGAGCTTTGGCATTGGCCTCCAACGAATCCAGCAAGTTAGTAGTCA
TTGCTCTGGCCGCCGCCGGAAACAAAGAGTGGTCACTCAGCCTCCCGGAT
TGCGAGAGTGCAGAGGCTGTTGTGGCCACGCGATTTCTAGTGGCTGTGGC
CACCAGCTCCAGTTTTCTGCGTATCTTCACCGTGATGGGTACACAGCGTG
AGGTGCTAACCATACCAGGACCAATGGTGGCTATTGCTGGACACGAGCAC
AGCCTAATGGTTGTTTACCACAGTTCCGCGCCCAGTCAGACGCAGCAGCA
TCTCGCCGCGATGTTGGTGAACATAAATGGATTGAGTTTGCGACAAGAAT
ATCTGCCCGTTCCGCTGACTCCAGGCCGGCAGCTCACCTGGTTTGGGTAC
AGCGACACCGGATCGCCGAGTATTGCCGACAACATGGGTCTGCTGCAGTT
GTATCGCCGGAGCAGCAACGCCTGGTTCCCCATCTGCGACACCATGAAGC
AAAGCACCAGTGTGTCGCACAACTTCTTTGTGGTCGCTGTATCCGAGAAA
CGTCAGATAGTCCAGGCGGTCCTGTGCCGCGGTACCTCCTATCCCATGAC
CAATCCGCGTCCCATGCTCCAGGAACTGCGTATGCAGATCCCGCTCTGCG
ACGTCGAAGTGGAAAAGTCCGAGCTGGAGGATGCACTGCTGCGGTCCAGT
CTGATGCAAATGGATGGGGCAGAGAAGATGCAAAAGGAGACGGCCATCAA
GCTGTTTGCATTGGCCTGCAGCAGCGAGTGCGAGACGCGAGCTAGGGAAT
TGATCGAATCGATTGCCTGCACTGATCTGCTTCAACTGGCCGTGAAATAC
GCCACGAAACGTGGACGCATCCACCTGTCCGACCGTCTGTGCGAACTGCT
ACCTCAATTGGAGGCGGTCCAGGAGGCACGCAAGCAGCAGACTTTGTTGG
GTGCCAGCGGCATTGCGGCCACCATTGTTCTGCCAATGACTCCCACATCG
GCCTCACAAAGCGGCCCAAAACCCAAGGCCATCGAGCTGAGCTCGGCCAA
ACGGGGCACCCTGAAGAGATTGGTCAATTCACCCAATATGTTTAAAGCAG
CAGCAGCATCGGCAGCATCCCGGCCCTCGACTCCGGATATCACACCCTCT
CCGCTGGACACCCAGGAAAACATATTCGGCGAATCGGAATCCGAGGTTCC
CATGGGTAAAGCCACCGATCACCGGTCCCCTTTGAATTCGGTTAATCCCT
TTGCTATGAAGCGCAAACTGGGCGACACTGGAGTCATCTTTGGATCCGAA
AAGCTGAAGCTGGCAAAGAAATAGTCTGTTTGTAGATTGATAAGTAGGTT
TAAGATAAATATATTATATAAATAATGTGTAACGTTTATCCCATTCTGTG
AGCTACATGTAAAATAACAAATTTTTATTTGAGCTTTTTATGGAACAGAA
TTGTTAAGGATTAATTTGCTTATTTAAATTTAAAGAATAAAATATACTTT
TATTTATATTAAAAAAAAAAAAAAAAAAAAA

LD47422.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13350-RA 3113 CG13350-RA 204..3113 1..2910 14550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9867676..9870585 2910..1 14460 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13980358..13983271 2914..1 14570 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13981557..13984470 2914..1 14570 100 Minus
Blast to na_te.dros performed 2019-03-15 19:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1314..1486 2901..2725 155 58.3 Minus
TART-C 11124 TART-C TARTC 11124bp 9131..9220 2444..2536 116 60.2 Plus

LD47422.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:58:00 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9867719..9870585 1..2867 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:16 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
CG13350-RA 1..2688 37..2724 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:56:00 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
CG13350-RA 1..2688 37..2724 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:03:55 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
Ctf4-RA 1..2688 37..2724 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:36:43 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
CG13350-RA 1..2688 37..2724 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:06 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
Ctf4-RA 1..2688 37..2724 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:33:12 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
CG13350-RA 204..3110 1..2907 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:56:00 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
CG13350-RA 204..3113 1..2910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:55 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
Ctf4-RA 47..2956 1..2910 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:43 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
CG13350-RA 204..3110 1..2907 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:06 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
Ctf4-RA 47..2956 1..2910 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:00 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13980362..13983271 1..2910 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:00 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13980362..13983271 1..2910 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:00 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13980362..13983271 1..2910 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:55 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9867867..9870776 1..2910 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:17 Download gff for LD47422.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13981561..13984470 1..2910 100   Minus

LD47422.pep Sequence

Translation from 36 to 2723

> LD47422.pep
MSFLRSALRYAHTNGYTGLLYTPRGEFIITCGTDGDIRHWTCISDDDPRS
SCLGEFVMCIAHTGTRLLASTDRNTIHAYTFPEMDSDGILMRFTAPATCL
KVSGGYTAAGSEDTTIKVLKGDTAGNETVLEGHTGPILALDLFAERKLLV
SVAGDGQLKVWNFEEGKELKTIGGLPKVNSFESASLYGTPHFEPQSGELL
AYAVDNEIVVLNTANWEVAFKLRDDSVSSNYSCCQFSPNGERLAAGTTKG
EVSIFDVKKRKAVTVEIPPSDCNAITCLAWNLSGEVEVAFCDATGQLGTV
FLGDAVDTGNGDGLVDDQAELLGDDYEFEAGDDVDTAADDGDGVSLEQLK
RKVMNFADPVDHDDASNQSLDSSSRTVPAPVAPQIKLFKQQTAFQPSATP
ADLEHRYMAWNDVGIVTAHVEPSGDSSIDVEFHDASIHHALHISNYNQHN
LASVSSGALALASNESSKLVVIALAAAGNKEWSLSLPDCESAEAVVATRF
LVAVATSSSFLRIFTVMGTQREVLTIPGPMVAIAGHEHSLMVVYHSSAPS
QTQQHLAAMLVNINGLSLRQEYLPVPLTPGRQLTWFGYSDTGSPSIADNM
GLLQLYRRSSNAWFPICDTMKQSTSVSHNFFVVAVSEKRQIVQAVLCRGT
SYPMTNPRPMLQELRMQIPLCDVEVEKSELEDALLRSSLMQMDGAEKMQK
ETAIKLFALACSSECETRARELIESIACTDLLQLAVKYATKRGRIHLSDR
LCELLPQLEAVQEARKQQTLLGASGIAATIVLPMTPTSASQSGPKPKAIE
LSSAKRGTLKRLVNSPNMFKAAAASAASRPSTPDITPSPLDTQENIFGES
ESEVPMGKATDHRSPLNSVNPFAMKRKLGDTGVIFGSEKLKLAKK*

LD47422.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11148-PA 892 GF11148-PA 1..892 1..895 4123 85.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22452-PA 893 GG22452-PA 1..893 1..895 4634 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22947-PA 902 GH22947-PA 1..902 1..895 3589 73.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ctf4-PA 895 CG13350-PA 1..895 1..895 4596 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18438-PA 897 GI18438-PA 1..897 1..895 3611 76.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20084-PA 886 GL20084-PA 1..886 1..895 3967 82.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12225-PA 886 GA12225-PA 1..886 1..895 3953 82.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20238-PA 893 GM20238-PA 1..893 1..895 4722 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25724-PA 893 GD25724-PA 1..893 1..895 4723 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21522-PA 899 GJ21522-PA 1..899 1..895 3703 76.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19526-PA 899 GK19526-PA 1..899 1..895 3624 75.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13323-PA 893 GE13323-PA 1..893 1..895 4551 96.1 Plus

LD47422.hyp Sequence

Translation from 36 to 2723

> LD47422.hyp
MSFLRSALRYAHTNGYTGLLYTPRGEFIITCGTDGDIRHWTCISDDDPRS
SCLGEFVMCIAHTGTRLLASTDRNTIHAYTFPEMDSDGILMRFTAPATCL
KVSGGYTAAGSEDTTIKVLKGDTAGNETVLEGHTGPILALDLFAERKLLV
SVAGDGQLKVWNFEEGKELKTIGGLPKVNSFESASLYGTPHFEPQSGELL
AYAVDNEIVVLNTANWEVAFKLRDDSVSSNYSCCQFSPNGERLAAGTTKG
EVSIFDVKKRKAVTVEIPPSDCNAITCLAWNLSGEVEVAFCDATGQLGTV
FLGDAVDTGNGDGLVDDQAELLGDDYEFEAGDDVDTAADDGDGVSLEQLK
RKVMNFADPVDHDDASNQSLDSSSRTVPAPVAPQIKLFKQQTAFQPSATP
ADLEHRYMAWNDVGIVTAHVEPSGDSSIDVEFHDASIHHALHISNYNQHN
LASVSSGALALASNESSKLVVIALAAAGNKEWSLSLPDCESAEAVVATRF
LVAVATSSSFLRIFTVMGTQREVLTIPGPMVAIAGHEHSLMVVYHSSAPS
QTQQHLAAMLVNINGLSLRQEYLPVPLTPGRQLTWFGYSDTGSPSIADNM
GLLQLYRRSSNAWFPICDTMKQSTSVSHNFFVVAVSEKRQIVQAVLCRGT
SYPMTNPRPMLQELRMQIPLCDVEVEKSELEDALLRSSLMQMDGAEKMQK
ETAIKLFALACSSECETRARELIESIACTDLLQLAVKYATKRGRIHLSDR
LCELLPQLEAVQEARKQQTLLGASGIAATIVLPMTPTSASQSGPKPKAIE
LSSAKRGTLKRLVNSPNMFKAAAASAASRPSTPDITPSPLDTQENIFGES
ESEVPMGKATDHRSPLNSVNPFAMKRKLGDTGVIFGSEKLKLAKK*

LD47422.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ctf4-PA 895 CG13350-PA 1..895 1..895 4596 100 Plus