Clone LD47425 Report

Search the DGRC for LD47425

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:474
Well:25
Vector:pOT2
Associated Gene/TranscriptFsn-RA
Protein status:LD47425.pep: gold
Preliminary Size:1393
Sequenced Size:1278

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4643 2001-01-01 Release 2 assignment
CG4643 2002-05-17 Blastp of sequenced clone
CG4643 2003-01-01 Sim4 clustering to Release 3
CG4643 2008-04-29 Release 5.5 accounting
CG4643 2008-08-15 Release 5.9 accounting
CG4643 2008-12-18 5.12 accounting

Clone Sequence Records

LD47425.complete Sequence

1278 bp (1278 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118594

> LD47425.complete
GCCAACGGTCACCCTGAATCGCAGAATATTAAAGTTTTCGAGTTTTATTT
TTACCCATTTGGTTGGTGTGGGAAAATGACAATCAACAGGAACGGGTAAA
TCCAAGCAGCTATCTACACGAGCCCAGCAGCGGAGCGCACACGCACACAA
TGGTCGATCCGGTGGCGGCGCTGTGCAATTACAATGTGCTGGAGGTAATC
TTCTCCTACCTGGAGCTGGACGACCTCAGTCATTGCTCGCAGGTGTGCAA
AAGTTGGTACCACTTCCTCAACGACGAGAACAGCGACGTCTGGCGCTGGC
ACTGCCTGAACAAGCTGCCCAAGGAGTCCCTCAAATCGGACCTGCTGGCC
TCCGTCTCCACGTACAAGACGAAGCTGCGGGCCTATTTTCACGCCTGGAG
CCCCAACGACTGTTCGAGGAATGTGTACATTAAGCCGAACGGATTCACCC
TGCATCGCAATCCCGTGGCGCAGAGCACAGACGCGGCCCGGGGCAAGATA
GGATTCCGCCACGGTCGTCACACCTGGGAGGTGATATGGGAGGGACCGCT
GGGCACTGTGGCCGTCATCGGCATATCTACCAAGGAGGCGGCTCTACAGT
GTCACGGCTATGTGGCTCTGCTCGGCTCCGACGACCAGAGCTGGGGCTGG
AATCTGGTCGAGAACCACCTGCTGCACAACGGCGACATGCAGGGCAGTTA
CCCGCTGCTGAACAATGCTCCCAAGTACCAAGTGGGCGAGCGGATACGCG
TCATTCTCGACTGCGAGGACAACACCTTGTCGTTCGAGAAGAACTACGAG
TTCCTCGGTGTGGCCTTCCGGGGCCTGCCGGACAAAAAGCTCTATCCCAC
AGTATCCGCTGTCTACGGCAATACCGAGGTCTCGATGGTCTATCTGGGCA
CGCCGTTGGACGGATAGCTTTGCAGAGGGCCTACAACTTGGTTAACAACT
TCCACGGATCCATTAGGTTATTGTGTACATTTGTATTTATCTCAATTATG
ATTGCTTCATTCCACCTGAAACTCAGTTCGATAAATTTAGTTAATAGTTT
CGTTTTTTTGTACAAAATTATGCATTTTGTTGATTTACGCTAAGCCAAAG
TTCATATCCACCTCGGCACTATCTCACATGGCAATTTACCTTAGTTATAC
GAACCAAATGAATATAATAAGCGATTAAACAATAGTTGAAGCAATTTTTT
ATACACCAATGATCGCTGATTGTGCAAGTAAAATTACAGACAGAAGAACG
AGTCGCGAATAAAAAAAAAAAAAAAAAA

LD47425.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Fsn-RB 1317 Fsn-RB 30..1294 1..1265 6310 99.9 Plus
Fsn-RA 1342 Fsn-RA 115..1342 33..1260 6140 100 Plus
Fsn.a 1347 Fsn.a 146..1324 87..1265 5880 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9109206..9109662 457..1 2285 100 Minus
chr2R 21145070 chr2R 9108283..9108721 1260..822 2195 100 Minus
chr2R 21145070 chr2R 9108783..9109149 823..457 1835 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13221862..13222318 457..1 2285 100 Minus
2R 25286936 2R 13220934..13221377 1265..822 2205 99.8 Minus
2R 25286936 2R 13221439..13221805 823..457 1835 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13223061..13223517 457..1 2285 100 Minus
2R 25260384 2R 13222133..13222576 1265..822 2205 99.7 Minus
2R 25260384 2R 13222638..13223004 823..457 1835 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:16:49 has no hits.

LD47425.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:18:00 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9108283..9108720 823..1260 100 <- Minus
chr2R 9108784..9109148 458..822 100 <- Minus
chr2R 9109206..9109662 1..457 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:17 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
CG4643-RA 1..768 150..917 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:41 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
Fsn-RA 1..768 150..917 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:46:44 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 1..768 150..917 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:12 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
CG4643-RA 1..768 150..917 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:14 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 1..768 150..917 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:25:23 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
CG4643-RB 20..1279 1..1260 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:41 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 20..1279 1..1260 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:46:44 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 21..1280 1..1260 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:12 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
CG4643-RB 20..1279 1..1260 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:14 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 21..1280 1..1260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:00 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13220939..13221376 823..1260 100 <- Minus
2R 13221440..13221804 458..822 100 <- Minus
2R 13221862..13222318 1..457 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:00 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13220939..13221376 823..1260 100 <- Minus
2R 13221440..13221804 458..822 100 <- Minus
2R 13221862..13222318 1..457 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:00 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13220939..13221376 823..1260 100 <- Minus
2R 13221440..13221804 458..822 100 <- Minus
2R 13221862..13222318 1..457 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:46:44 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9108444..9108881 823..1260 100 <- Minus
arm_2R 9108945..9109309 458..822 100 <- Minus
arm_2R 9109367..9109823 1..457 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:31 Download gff for LD47425.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13222138..13222575 823..1260 100 <- Minus
2R 13222639..13223003 458..822 100 <- Minus
2R 13223061..13223517 1..457 100   Minus

LD47425.pep Sequence

Translation from 149 to 916

> LD47425.pep
MVDPVAALCNYNVLEVIFSYLELDDLSHCSQVCKSWYHFLNDENSDVWRW
HCLNKLPKESLKSDLLASVSTYKTKLRAYFHAWSPNDCSRNVYIKPNGFT
LHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPLGTVAVIGISTKEAALQ
CHGYVALLGSDDQSWGWNLVENHLLHNGDMQGSYPLLNNAPKYQVGERIR
VILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYLG
TPLDG*

LD47425.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12960-PA 255 GF12960-PA 1..255 1..255 1334 96.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22511-PA 255 GG22511-PA 1..255 1..255 1363 98.8 Plus
Dere\GG23140-PA 349 GG23140-PA 126..300 81..250 389 46.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21169-PA 252 GH21169-PA 1..252 1..255 1285 93.3 Plus
Dgri\GH13013-PA 349 GH13013-PA 126..300 81..250 387 45.1 Plus
Dgri\GH11484-PA 283 GH11484-PA 51..215 82..246 161 29.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Fsn-PA 255 CG4643-PA 1..255 1..255 1395 100 Plus
Fsn-PB 255 CG4643-PB 1..255 1..255 1395 100 Plus
gus-PM 279 CG2944-PM 56..230 81..250 394 45.7 Plus
gus-PL 279 CG2944-PL 56..230 81..250 394 45.7 Plus
gus-PK 279 CG2944-PK 56..230 81..250 394 45.7 Plus
gus-PJ 279 CG2944-PJ 56..230 81..250 394 45.7 Plus
gus-PI 279 CG2944-PI 56..230 81..250 394 45.7 Plus
gus-PH 279 CG2944-PH 56..230 81..250 394 45.7 Plus
gus-PG 279 CG2944-PG 56..230 81..250 394 45.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18764-PA 252 GI18764-PA 1..252 1..255 1280 93.3 Plus
Dmoj\GI18267-PA 349 GI18267-PA 126..300 81..250 390 45.1 Plus
Dmoj\GI16979-PA 316 GI16979-PA 85..249 82..246 160 29.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10506-PA 255 GL10506-PA 1..255 1..255 1262 90.6 Plus
Dper\GL15433-PA 349 GL15433-PA 126..300 81..250 393 46.3 Plus
Dper\GL26545-PA 292 GL26545-PA 65..229 82..246 168 30.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18323-PA 255 GA18323-PA 1..255 1..255 1262 90.6 Plus
Dpse\GA23998-PA 349 GA23998-PA 126..300 81..250 393 46.3 Plus
Dpse\GA12721-PA 292 GA12721-PA 65..229 82..246 168 30.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20297-PA 255 GM20297-PA 1..255 1..255 1362 99.2 Plus
Dsec\GM26734-PA 349 GM26734-PA 126..300 81..250 387 45.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25778-PA 245 GD25778-PA 1..245 1..255 1294 95.7 Plus
Dsim\GD16681-PA 349 GD16681-PA 126..300 81..250 387 45.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21788-PA 252 GJ21788-PA 1..252 1..255 1290 94.5 Plus
Dvir\GJ21895-PA 349 GJ21895-PA 126..300 81..250 387 44.6 Plus
Dvir\GJ17226-PA 299 GJ17226-PA 67..231 82..246 155 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22006-PA 255 GK22006-PA 1..255 1..255 1312 94.1 Plus
Dwil\GK14868-PA 349 GK14868-PA 126..300 81..250 375 44.6 Plus
Dwil\GK24858-PA 301 GK24858-PA 74..235 82..246 176 31 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13381-PA 255 GE13381-PA 1..255 1..255 1357 98.4 Plus
Dyak\gus-PA 349 GE11348-PA 126..300 81..250 387 45.7 Plus

LD47425.hyp Sequence

Translation from 149 to 916

> LD47425.hyp
MVDPVAALCNYNVLEVIFSYLELDDLSHCSQVCKSWYHFLNDENSDVWRW
HCLNKLPKESLKSDLLASVSTYKTKLRAYFHAWSPNDCSRNVYIKPNGFT
LHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPLGTVAVIGISTKEAALQ
CHGYVALLGSDDQSWGWNLVENHLLHNGDMQGSYPLLNNAPKYQVGERIR
VILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYLG
TPLDG*

LD47425.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Fsn-PA 255 CG4643-PA 1..255 1..255 1395 100 Plus
Fsn-PB 255 CG4643-PB 1..255 1..255 1395 100 Plus
gus-PM 279 CG2944-PM 56..230 81..250 394 45.7 Plus
gus-PL 279 CG2944-PL 56..230 81..250 394 45.7 Plus
gus-PK 279 CG2944-PK 56..230 81..250 394 45.7 Plus