BDGP Sequence Production Resources |
Search the DGRC for LD47433
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 474 |
Well: | 33 |
Vector: | pOT2 |
Associated Gene/Transcript | CG17724-RA |
Protein status: | LD47433.pep: gold |
Preliminary Size: | 3377 |
Sequenced Size: | 3433 |
Gene | Date | Evidence |
---|---|---|
CG17724 | 2001-07-04 | Blastp of sequenced clone |
CG17724 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17724 | 2008-04-29 | Release 5.5 accounting |
CG17724 | 2008-08-15 | Release 5.9 accounting |
seq | 2008-08-15 | Release 5.9 accounting |
CG17724 | 2008-12-18 | 5.12 accounting |
seq | 2008-12-18 | 5.12 accounting |
3433 bp (3433 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060442
> LD47433.complete CACAACACCACCAGCAGATGGCGGAGGAGATGCCAAAAAGGAGCGACAGT CGCTGCAGTTTATGCAACAATCGCGTAAATTTGAGGGCAAGATACCAAAA CTAAGTCAAACGAGTGCAGCAACAGGAGGAGCAACGGCAGCCGCAGAAGC ATCCACATCCAAGTCTAGTCAAGGGCAGCAGCAACAGATTGTCTACGTCA ACATGTTGCCCGCGGCCAATACCCTGAATGGCATTCCACAGCAGCAGCAG CAGCAACAATATGCGAGCACGGATGGAAATGTCTATCAGCTGCAAAATGA AATACTCTGTGATGCAAATGGACATGCCGTGACTGCCGCCACGGCCTCAT ATCAAACTACGGCCAGTAGTCCGCAGCAGCAGCAACAGCAGCAGCAGCAG CAACAGAATGTTGCAACTAGTGTTGCCGCTACGATATATCAGAGGCAGTG CTATTAGCTCTCTGAATAAAACGATCCACACAGAAAGCTGCAGCCAAAGT ACCAAAAATTCTATTTAACGAATACAAGACTCAACACCGAGTTCGCAATG AATACGATAGCTAAACGAATCGAGTTTAAAAGTGAATACCACCCAATCAT AATCCCCAAACGAAAGCAACGCAAATGGAAGACATTTTCAATGTTTGCCC AGATCAACGGACAAGCATATAAATAAATAATCCACCAAACTAACTTAGCG AAGCATTTGTGTACTTACATCCGACACATCACATACTCATAATAGTCGGT TGCTTGAGGAGATCTCGTCTCGTCTCGCCTTATTCATTGATTCATTCACT ATTCCATCGTCACTTGTTGTGTGTGCGTGTGTGCAAGAGCAGCAACGAGC AAATACCAAAAAAATCGAAAGAAACAAGCAAATAATGATCTCTCCATGAA ACATAAAAAATAAATTAAACATATAAAAAAATATTGGACAATTAGTGAAA GGTTCTTCTAAACACGACAACCACCAGAAACAAATGTTCAAGAGGCCATA CAACACCACACCAAGCAACAACAACAGAACCCAGAACACCATCACCAATC CAAGTCCGAACTCGAATTCGAATCCGAATCAGAATCAGAATCGGATTCAG AGTCAGATCAATAACACCACACAAGATGATTCGCAACGCCGGCAAGTGGA AGCGTATCGCATTTACTACGAAGAAATCGTCGTCAAGCAGGCTAATGCCC GTGCTCGTCTTGGCGACAGCAGCACACGTTGCAGCAACAGCATCACCAGC CGCAATACCAGCAGCAGTGGCCGCGGCAGCAGTTTCGTCGACAAGTTCGC TGACTTTGTGACCCACTCGAGCCGAACTTCTCCCATGCCCAATCCCCCTG CCCAGTCCCATGTGCCGCCAACCACAAGAAATGCGACTAATGCAATCCTT CCTCCCAAAACAAACAGCAGCAGCAGCAGCAGCGGCGGCAACAGCAGCAG CAGCGGAGCCACTAGCAACAATGCATCCACCGTGGTGAGCAGCAGTGCGA GCAATGGCCTCAAGCCGGCGGCCAAGAAGACACCAGTCATTCTGCTGGCC GCTCGTGGTGCCGCCAAGCAGCCGCAGCTCAGCATTCTTAATGGCAACAC CAAGGCCGGAACCGGAAATGCAAGCGGAGGCGGCGGCGGTGTTACATTGG TGCGCGTCAATGCAACCAATCGCAATCAGCGCCAAGTTATCGTCGCTCCG GAGGCAACACCTGTGGAACACCAGCAGCCAGTGGTCGAGGAGGAGATGTT GGCCGAGGACGATGAGCTCGACGAGGACATGGATGAGGATGCAGTTGCCC TGTCCGGGCTCTCCTCCTCGACTGCCCAGATCCTGCGAAAGTTCCGCATA CCCAAGGGGACGGCCGTGACGGCCAAGTCGGGGGAGAACTACCTGGCCAT GCCGACACCAACACCCTCGCCGCCGGGTGTCGTCAATTTGGTTAGCTCCG GCGTTGAGGCTTCCGGCTACATAGAGAACGACGACGACATCATCGAGGAG CTCAACGAGGACGACCTGGTCGAGGAGATCATCGACGAGGAGCCCAGTCA GGAGCAGCCGGAGTTGCAAGAGACGACGACCGCCAATGGCCTAGATCTGA GCAGCACGAACAATGCGACTGCCACAACGACTGGCACCGCCATGCTGCTG GCCCCACAACCGCCTCCGCTTCAGCTGCAGACTGTGGCCTCCAACGGCAC CGTGACCTGCTTCAACCTGCCGGCCAACACCATCCTGCTGCAGTCGCCCG ATGGCAGCATAATCGCCGCCACCCAGGTGCCGCATCCCAGCAAGGCGGGT CAGCAGCAGCTGATTGCGTTGCCGGGCAACGTGGCCCTGGCCACCGAACA GGCGTCGCAGTCTCAAGCCACATCGGCTCCACAGGCCACGCAGACCCTGA TCCTGACCGCCGACGGCACGGCCATTCCCATCCTGGCCACAAATCCCCAA CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAACA GGCTGCCGCTGCTGCTGCTGCTCAGTTGTTCGCCGCGTAGGGTCTAATGG GTGGCCAAATGGGTCGATTTTTGAACAGTGCCACCATAATGCCGACCACA TACTTCTTTTAGAAATCTCAAAAATGTTCCGCGCAGATTCGGTTGCCCAT GGCGCAAAGCTGGGAACGCAGCTCTGTGCCGTCGGCAACGTTTAAATGTT TTTAGGGTTTTAGAATACTTCAAAAATCGTCACATTTGGCCACCAAAATG CGGGGAGAAATGCAACAGGAGCGTTTGCTGTAAAGAAACGAATGAAATGG AAGGAATATTAACTCAAACTTAAGCCAAGCTAACTCATTGATATTACCAC ACTGTTGGATGTGCATACGAAATTTATTTTTTTACTCAAAAACCAAATGC CTACAAGAATATAAATCAAATGTTGTTCAACACACAGAAACAAACACACA CACGCGAATGGATTTGAGGCGGAATCAAATGCATTCGGTTCACGGCAAAC TTAAGAGCATCGTAAATTAAAATAATTTTTACGCCTAAGATAAATTTTAA ATGTTTAAGTGCAAAACACGAGACACACACCCCAAACCAGATGTAACAAT TTCACCTGCCTACAGTGCGGGCAGAATATGTTTAGCGTAATTTAGTTTTG CAAGAACGATTCCGTTTCGATGAAAAGGATAGCTCACTTTTGTAACTACC GGGAGCGTTCTCAAGAAATATACTTATAAATATAATTTGTTCCTTGCATA ATGAGAGATAGACAGCTAGAGCGACTATGCAACGTATTTCATGTAGTATT TATTCGATAAGTTCTCGATCTATTTATTTATTTTTGTTAACTATTTCCAT TCGTGTGACCCGCCGCCACCTTTGTCATTACACTTTCTTTTGCCATGTTG TATATTCTTTACAATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9063866..9066328 | 3412..950 | 12240 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 9066899..9067424 | 953..428 | 2630 | 100 | Minus |
chr2R | 21145070 | chr2R | 9072102..9072502 | 428..28 | 2005 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13176553..13179015 | 3412..950 | 12315 | 100 | Minus |
2R | 25286936 | 2R | 13179586..13180111 | 953..428 | 2630 | 100 | Minus |
2R | 25286936 | 2R | 13184777..13185177 | 428..28 | 2005 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13177752..13180214 | 3412..950 | 12315 | 100 | Minus |
2R | 25260384 | 2R | 13180785..13181310 | 953..428 | 2630 | 100 | Minus |
2R | 25260384 | 2R | 13185976..13186376 | 428..28 | 2005 | 100 | Minus |
2R | 25260384 | 2R | 13186983..13187011 | 29..1 | 145 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2984 | 961..1603 | 234 | 54.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2560 | 1210..1477 | 175 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6822 | 1213..1293 | 171 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6853 | 1213..1282 | 170 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6844 | 1213..1294 | 167 | 67.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1158 | 1214..1293 | 166 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6866 | 1217..1283 | 164 | 71.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2439 | 1213..1289 | 160 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6790 | 1217..1282 | 159 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2423 | 1214..1294 | 153 | 65.4 | Plus |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 377..606 | 835..1052 | 146 | 58.4 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3252..3345 | 1185..1277 | 134 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2425 | 1213..1281 | 129 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1482..1552 | 983..1047 | 126 | 67.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 1214..1265 | 125 | 71.2 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 514..705 | 999..1191 | 125 | 58.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2350..2527 | 315..496 | 123 | 57.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1109..1163 | 1211..1265 | 122 | 69.1 | Plus |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2532..2567 | 1098..1063 | 117 | 80.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9063863..9064776 | 2502..3415 | 99 | == | Minus |
chr2R | 9064831..9065995 | 1283..2447 | 96 | == | Minus |
chr2R | 9066066..9066182 | 1096..1212 | 100 | == | Minus |
chr2R | 9066252..9066326 | 952..1026 | 100 | <- | Minus |
chr2R | 9066901..9067438 | 407..951 | 92 | -> | Minus |
chr2R | 9069301..9069334 | 369..406 | 81 | <- | Minus |
chr2R | 9072162..9072500 | 30..368 | 100 | <- | Minus |
chr2R | 9073109..9073137 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17724-RA | 1..1557 | 984..2540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17724-RA | 1..1557 | 984..2540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17724-RE | 1..1629 | 984..2612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17724-RA | 1..1557 | 984..2540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17724-RE | 1..1629 | 984..2612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17724-RA | 1..3414 | 1..3415 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17724-RA | 1..3414 | 1..3415 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Kdm4B-RE | 2307..5720 | 1..3415 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17724-RA | 1..3414 | 1..3415 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17724-RA | 1..3412 | 1..3412 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13184777..13185175 | 30..428 | 100 | <- | Minus |
2R | 13185784..13185812 | 1..29 | 100 | Minus | |
2R | 13176549..13179013 | 952..3415 | 99 | <- | Minus |
2R | 13179588..13180110 | 429..951 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13184777..13185175 | 30..428 | 100 | <- | Minus |
2R | 13185784..13185812 | 1..29 | 100 | Minus | |
2R | 13176549..13179013 | 952..3415 | 99 | <- | Minus |
2R | 13179588..13180110 | 429..951 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13184777..13185175 | 30..428 | 100 | <- | Minus |
2R | 13185784..13185812 | 1..29 | 100 | Minus | |
2R | 13176549..13179013 | 952..3415 | 99 | <- | Minus |
2R | 13179588..13180110 | 429..951 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9064054..9066518 | 952..3415 | 99 | <- | Minus |
arm_2R | 9067093..9067615 | 429..951 | 100 | <- | Minus |
arm_2R | 9072282..9072680 | 30..428 | 100 | <- | Minus |
arm_2R | 9073289..9073317 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13177748..13180212 | 952..3415 | 99 | <- | Minus |
2R | 13180787..13181309 | 429..951 | 100 | <- | Minus |
2R | 13185976..13186374 | 30..428 | 100 | <- | Minus |
2R | 13186983..13187011 | 1..29 | 100 | Minus |
Translation from 983 to 2539
> LD47433.pep MFKRPYNTTPSNNNRTQNTITNPSPNSNSNPNQNQNRIQSQINNTTQDDS QRRQVEAYRIYYEEIVVKQANARARLGDSSTRCSNSITSRNTSSSGRGSS FVDKFADFVTHSSRTSPMPNPPAQSHVPPTTRNATNAILPPKTNSSSSSS GGNSSSSGATSNNASTVVSSSASNGLKPAAKKTPVILLAARGAAKQPQLS ILNGNTKAGTGNASGGGGGVTLVRVNATNRNQRQVIVAPEATPVEHQQPV VEEEMLAEDDELDEDMDEDAVALSGLSSSTAQILRKFRIPKGTAVTAKSG ENYLAMPTPTPSPPGVVNLVSSGVEASGYIENDDDIIEELNEDDLVEEII DEEPSQEQPELQETTTANGLDLSSTNNATATTTGTAMLLAPQPPPLQLQT VASNGTVTCFNLPANTILLQSPDGSIIAATQVPHPSKAGQQQLIALPGNV ALATEQASQSQATSAPQATQTLILTADGTAIPILATNPQQQQQQQQQQQQ QQQQQQAAAAAAAQLFAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19823-PA | 435 | GF19823-PA | 4..411 | 48..488 | 1135 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22522-PA | 547 | GG22522-PA | 23..519 | 1..488 | 1789 | 85.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24960-PA | 525 | GH24960-PA | 12..498 | 48..485 | 738 | 45.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17724-PE | 542 | CG17724-PE | 1..518 | 1..518 | 2597 | 100 | Plus |
CG17724-PD | 518 | CG17724-PD | 1..518 | 1..518 | 2597 | 100 | Plus |
CG17724-PB | 518 | CG17724-PB | 1..518 | 1..518 | 2597 | 100 | Plus |
CG17724-PF | 518 | CG17724-PF | 1..518 | 1..518 | 2597 | 100 | Plus |
CG17724-PA | 518 | CG17724-PA | 1..518 | 1..518 | 2597 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18399-PA | 535 | GI18399-PA | 10..501 | 49..485 | 629 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17675-PA | 504 | GL17675-PA | 41..472 | 48..485 | 970 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14627-PA | 504 | GA14627-PA | 1..470 | 1..485 | 976 | 57.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20308-PA | 507 | GM20308-PA | 1..480 | 1..488 | 1907 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25787-PA | 516 | GD25787-PA | 1..489 | 1..488 | 1803 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21477-PA | 529 | GJ21477-PA | 17..493 | 49..485 | 606 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21398-PA | 536 | GK21398-PA | 1..518 | 1..489 | 649 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13394-PA | 530 | GE13394-PA | 1..504 | 1..488 | 1627 | 79.8 | Plus |
Translation from 983 to 2539
> LD47433.hyp MFKRPYNTTPSNNNRTQNTITNPSPNSNSNPNQNQNRIQSQINNTTQDDS QRRQVEAYRIYYEEIVVKQANARARLGDSSTRCSNSITSRNTSSSGRGSS FVDKFADFVTHSSRTSPMPNPPAQSHVPPTTRNATNAILPPKTNSSSSSS GGNSSSSGATSNNASTVVSSSASNGLKPAAKKTPVILLAARGAAKQPQLS ILNGNTKAGTGNASGGGGGVTLVRVNATNRNQRQVIVAPEATPVEHQQPV VEEEMLAEDDELDEDMDEDAVALSGLSSSTAQILRKFRIPKGTAVTAKSG ENYLAMPTPTPSPPGVVNLVSSGVEASGYIENDDDIIEELNEDDLVEEII DEEPSQEQPELQETTTANGLDLSSTNNATATTTGTAMLLAPQPPPLQLQT VASNGTVTCFNLPANTILLQSPDGSIIAATQVPHPSKAGQQQLIALPGNV ALATEQASQSQATSAPQATQTLILTADGTAIPILATNPQQQQQQQQQQQQ QQQQQQAAAAAAAQLFAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17724-PE | 542 | CG17724-PE | 1..518 | 1..518 | 2597 | 100 | Plus |
CG17724-PD | 518 | CG17724-PD | 1..518 | 1..518 | 2597 | 100 | Plus |
CG17724-PB | 518 | CG17724-PB | 1..518 | 1..518 | 2597 | 100 | Plus |
CG17724-PF | 518 | CG17724-PF | 1..518 | 1..518 | 2597 | 100 | Plus |
CG17724-PA | 518 | CG17724-PA | 1..518 | 1..518 | 2597 | 100 | Plus |