Clone LD47433 Report

Search the DGRC for LD47433

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:474
Well:33
Vector:pOT2
Associated Gene/TranscriptCG17724-RA
Protein status:LD47433.pep: gold
Preliminary Size:3377
Sequenced Size:3433

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17724 2001-07-04 Blastp of sequenced clone
CG17724 2003-01-01 Sim4 clustering to Release 3
CG17724 2008-04-29 Release 5.5 accounting
CG17724 2008-08-15 Release 5.9 accounting
seq 2008-08-15 Release 5.9 accounting
CG17724 2008-12-18 5.12 accounting
seq 2008-12-18 5.12 accounting

Clone Sequence Records

LD47433.complete Sequence

3433 bp (3433 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060442

> LD47433.complete
CACAACACCACCAGCAGATGGCGGAGGAGATGCCAAAAAGGAGCGACAGT
CGCTGCAGTTTATGCAACAATCGCGTAAATTTGAGGGCAAGATACCAAAA
CTAAGTCAAACGAGTGCAGCAACAGGAGGAGCAACGGCAGCCGCAGAAGC
ATCCACATCCAAGTCTAGTCAAGGGCAGCAGCAACAGATTGTCTACGTCA
ACATGTTGCCCGCGGCCAATACCCTGAATGGCATTCCACAGCAGCAGCAG
CAGCAACAATATGCGAGCACGGATGGAAATGTCTATCAGCTGCAAAATGA
AATACTCTGTGATGCAAATGGACATGCCGTGACTGCCGCCACGGCCTCAT
ATCAAACTACGGCCAGTAGTCCGCAGCAGCAGCAACAGCAGCAGCAGCAG
CAACAGAATGTTGCAACTAGTGTTGCCGCTACGATATATCAGAGGCAGTG
CTATTAGCTCTCTGAATAAAACGATCCACACAGAAAGCTGCAGCCAAAGT
ACCAAAAATTCTATTTAACGAATACAAGACTCAACACCGAGTTCGCAATG
AATACGATAGCTAAACGAATCGAGTTTAAAAGTGAATACCACCCAATCAT
AATCCCCAAACGAAAGCAACGCAAATGGAAGACATTTTCAATGTTTGCCC
AGATCAACGGACAAGCATATAAATAAATAATCCACCAAACTAACTTAGCG
AAGCATTTGTGTACTTACATCCGACACATCACATACTCATAATAGTCGGT
TGCTTGAGGAGATCTCGTCTCGTCTCGCCTTATTCATTGATTCATTCACT
ATTCCATCGTCACTTGTTGTGTGTGCGTGTGTGCAAGAGCAGCAACGAGC
AAATACCAAAAAAATCGAAAGAAACAAGCAAATAATGATCTCTCCATGAA
ACATAAAAAATAAATTAAACATATAAAAAAATATTGGACAATTAGTGAAA
GGTTCTTCTAAACACGACAACCACCAGAAACAAATGTTCAAGAGGCCATA
CAACACCACACCAAGCAACAACAACAGAACCCAGAACACCATCACCAATC
CAAGTCCGAACTCGAATTCGAATCCGAATCAGAATCAGAATCGGATTCAG
AGTCAGATCAATAACACCACACAAGATGATTCGCAACGCCGGCAAGTGGA
AGCGTATCGCATTTACTACGAAGAAATCGTCGTCAAGCAGGCTAATGCCC
GTGCTCGTCTTGGCGACAGCAGCACACGTTGCAGCAACAGCATCACCAGC
CGCAATACCAGCAGCAGTGGCCGCGGCAGCAGTTTCGTCGACAAGTTCGC
TGACTTTGTGACCCACTCGAGCCGAACTTCTCCCATGCCCAATCCCCCTG
CCCAGTCCCATGTGCCGCCAACCACAAGAAATGCGACTAATGCAATCCTT
CCTCCCAAAACAAACAGCAGCAGCAGCAGCAGCGGCGGCAACAGCAGCAG
CAGCGGAGCCACTAGCAACAATGCATCCACCGTGGTGAGCAGCAGTGCGA
GCAATGGCCTCAAGCCGGCGGCCAAGAAGACACCAGTCATTCTGCTGGCC
GCTCGTGGTGCCGCCAAGCAGCCGCAGCTCAGCATTCTTAATGGCAACAC
CAAGGCCGGAACCGGAAATGCAAGCGGAGGCGGCGGCGGTGTTACATTGG
TGCGCGTCAATGCAACCAATCGCAATCAGCGCCAAGTTATCGTCGCTCCG
GAGGCAACACCTGTGGAACACCAGCAGCCAGTGGTCGAGGAGGAGATGTT
GGCCGAGGACGATGAGCTCGACGAGGACATGGATGAGGATGCAGTTGCCC
TGTCCGGGCTCTCCTCCTCGACTGCCCAGATCCTGCGAAAGTTCCGCATA
CCCAAGGGGACGGCCGTGACGGCCAAGTCGGGGGAGAACTACCTGGCCAT
GCCGACACCAACACCCTCGCCGCCGGGTGTCGTCAATTTGGTTAGCTCCG
GCGTTGAGGCTTCCGGCTACATAGAGAACGACGACGACATCATCGAGGAG
CTCAACGAGGACGACCTGGTCGAGGAGATCATCGACGAGGAGCCCAGTCA
GGAGCAGCCGGAGTTGCAAGAGACGACGACCGCCAATGGCCTAGATCTGA
GCAGCACGAACAATGCGACTGCCACAACGACTGGCACCGCCATGCTGCTG
GCCCCACAACCGCCTCCGCTTCAGCTGCAGACTGTGGCCTCCAACGGCAC
CGTGACCTGCTTCAACCTGCCGGCCAACACCATCCTGCTGCAGTCGCCCG
ATGGCAGCATAATCGCCGCCACCCAGGTGCCGCATCCCAGCAAGGCGGGT
CAGCAGCAGCTGATTGCGTTGCCGGGCAACGTGGCCCTGGCCACCGAACA
GGCGTCGCAGTCTCAAGCCACATCGGCTCCACAGGCCACGCAGACCCTGA
TCCTGACCGCCGACGGCACGGCCATTCCCATCCTGGCCACAAATCCCCAA
CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAACA
GGCTGCCGCTGCTGCTGCTGCTCAGTTGTTCGCCGCGTAGGGTCTAATGG
GTGGCCAAATGGGTCGATTTTTGAACAGTGCCACCATAATGCCGACCACA
TACTTCTTTTAGAAATCTCAAAAATGTTCCGCGCAGATTCGGTTGCCCAT
GGCGCAAAGCTGGGAACGCAGCTCTGTGCCGTCGGCAACGTTTAAATGTT
TTTAGGGTTTTAGAATACTTCAAAAATCGTCACATTTGGCCACCAAAATG
CGGGGAGAAATGCAACAGGAGCGTTTGCTGTAAAGAAACGAATGAAATGG
AAGGAATATTAACTCAAACTTAAGCCAAGCTAACTCATTGATATTACCAC
ACTGTTGGATGTGCATACGAAATTTATTTTTTTACTCAAAAACCAAATGC
CTACAAGAATATAAATCAAATGTTGTTCAACACACAGAAACAAACACACA
CACGCGAATGGATTTGAGGCGGAATCAAATGCATTCGGTTCACGGCAAAC
TTAAGAGCATCGTAAATTAAAATAATTTTTACGCCTAAGATAAATTTTAA
ATGTTTAAGTGCAAAACACGAGACACACACCCCAAACCAGATGTAACAAT
TTCACCTGCCTACAGTGCGGGCAGAATATGTTTAGCGTAATTTAGTTTTG
CAAGAACGATTCCGTTTCGATGAAAAGGATAGCTCACTTTTGTAACTACC
GGGAGCGTTCTCAAGAAATATACTTATAAATATAATTTGTTCCTTGCATA
ATGAGAGATAGACAGCTAGAGCGACTATGCAACGTATTTCATGTAGTATT
TATTCGATAAGTTCTCGATCTATTTATTTATTTTTGTTAACTATTTCCAT
TCGTGTGACCCGCCGCCACCTTTGTCATTACACTTTCTTTTGCCATGTTG
TATATTCTTTACAATAAAAAAAAAAAAAAAAAA

LD47433.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17724-RA 3873 CG17724-RA 1..3412 1..3412 17060 100 Plus
seq-RA 3587 seq-RA 3158..3587 428..857 2150 100 Plus
seq-RA 3587 seq-RA 515..913 30..428 1995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9063866..9066328 3412..950 12240 99.8 Minus
chr2R 21145070 chr2R 9066899..9067424 953..428 2630 100 Minus
chr2R 21145070 chr2R 9072102..9072502 428..28 2005 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13176553..13179015 3412..950 12315 100 Minus
2R 25286936 2R 13179586..13180111 953..428 2630 100 Minus
2R 25286936 2R 13184777..13185177 428..28 2005 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13177752..13180214 3412..950 12315 100 Minus
2R 25260384 2R 13180785..13181310 953..428 2630 100 Minus
2R 25260384 2R 13185976..13186376 428..28 2005 100 Minus
2R 25260384 2R 13186983..13187011 29..1 145 100 Minus
Blast to na_te.dros performed 2019-03-16 20:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2984 961..1603 234 54.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2303..2560 1210..1477 175 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6822 1213..1293 171 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6853 1213..1282 170 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6844 1213..1294 167 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1079..1158 1214..1293 166 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6866 1217..1283 164 71.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2439 1213..1289 160 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6790 1217..1282 159 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2423 1214..1294 153 65.4 Plus
gypsy9 5349 gypsy9 GYPSY9 5349bp 377..606 835..1052 146 58.4 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3252..3345 1185..1277 134 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2357..2425 1213..1281 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1482..1552 983..1047 126 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1587 1214..1265 125 71.2 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 514..705 999..1191 125 58.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 2350..2527 315..496 123 57.1 Plus
roo 9092 roo DM_ROO 9092bp 1109..1163 1211..1265 122 69.1 Plus
transib2 2844 transib2 TRANSIB2 2844bp 2532..2567 1098..1063 117 80.6 Minus

LD47433.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:16:46 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9063863..9064776 2502..3415 99 == Minus
chr2R 9064831..9065995 1283..2447 96 == Minus
chr2R 9066066..9066182 1096..1212 100 == Minus
chr2R 9066252..9066326 952..1026 100 <- Minus
chr2R 9066901..9067438 407..951 92 -> Minus
chr2R 9069301..9069334 369..406 81 <- Minus
chr2R 9072162..9072500 30..368 100 <- Minus
chr2R 9073109..9073137 1..29 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:18 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 1..1557 984..2540 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:51 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 1..1557 984..2540 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:41:25 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RE 1..1629 984..2612 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:13 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 1..1557 984..2540 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:18 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RE 1..1629 984..2612 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:08:12 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 1..3414 1..3415 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:51 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 1..3414 1..3415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:25 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
Kdm4B-RE 2307..5720 1..3415 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:13 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 1..3414 1..3415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:18 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17724-RA 1..3412 1..3412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:46 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13184777..13185175 30..428 100 <- Minus
2R 13185784..13185812 1..29 100   Minus
2R 13176549..13179013 952..3415 99 <- Minus
2R 13179588..13180110 429..951 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:46 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13184777..13185175 30..428 100 <- Minus
2R 13185784..13185812 1..29 100   Minus
2R 13176549..13179013 952..3415 99 <- Minus
2R 13179588..13180110 429..951 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:46 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13184777..13185175 30..428 100 <- Minus
2R 13185784..13185812 1..29 100   Minus
2R 13176549..13179013 952..3415 99 <- Minus
2R 13179588..13180110 429..951 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:25 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9064054..9066518 952..3415 99 <- Minus
arm_2R 9067093..9067615 429..951 100 <- Minus
arm_2R 9072282..9072680 30..428 100 <- Minus
arm_2R 9073289..9073317 1..29 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:04 Download gff for LD47433.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13177748..13180212 952..3415 99 <- Minus
2R 13180787..13181309 429..951 100 <- Minus
2R 13185976..13186374 30..428 100 <- Minus
2R 13186983..13187011 1..29 100   Minus

LD47433.pep Sequence

Translation from 983 to 2539

> LD47433.pep
MFKRPYNTTPSNNNRTQNTITNPSPNSNSNPNQNQNRIQSQINNTTQDDS
QRRQVEAYRIYYEEIVVKQANARARLGDSSTRCSNSITSRNTSSSGRGSS
FVDKFADFVTHSSRTSPMPNPPAQSHVPPTTRNATNAILPPKTNSSSSSS
GGNSSSSGATSNNASTVVSSSASNGLKPAAKKTPVILLAARGAAKQPQLS
ILNGNTKAGTGNASGGGGGVTLVRVNATNRNQRQVIVAPEATPVEHQQPV
VEEEMLAEDDELDEDMDEDAVALSGLSSSTAQILRKFRIPKGTAVTAKSG
ENYLAMPTPTPSPPGVVNLVSSGVEASGYIENDDDIIEELNEDDLVEEII
DEEPSQEQPELQETTTANGLDLSSTNNATATTTGTAMLLAPQPPPLQLQT
VASNGTVTCFNLPANTILLQSPDGSIIAATQVPHPSKAGQQQLIALPGNV
ALATEQASQSQATSAPQATQTLILTADGTAIPILATNPQQQQQQQQQQQQ
QQQQQQAAAAAAAQLFAA*

LD47433.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19823-PA 435 GF19823-PA 4..411 48..488 1135 63.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22522-PA 547 GG22522-PA 23..519 1..488 1789 85.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24960-PA 525 GH24960-PA 12..498 48..485 738 45.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17724-PE 542 CG17724-PE 1..518 1..518 2597 100 Plus
CG17724-PD 518 CG17724-PD 1..518 1..518 2597 100 Plus
CG17724-PB 518 CG17724-PB 1..518 1..518 2597 100 Plus
CG17724-PF 518 CG17724-PF 1..518 1..518 2597 100 Plus
CG17724-PA 518 CG17724-PA 1..518 1..518 2597 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18399-PA 535 GI18399-PA 10..501 49..485 629 46.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17675-PA 504 GL17675-PA 41..472 48..485 970 59.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14627-PA 504 GA14627-PA 1..470 1..485 976 57.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20308-PA 507 GM20308-PA 1..480 1..488 1907 93 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25787-PA 516 GD25787-PA 1..489 1..488 1803 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21477-PA 529 GJ21477-PA 17..493 49..485 606 46.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21398-PA 536 GK21398-PA 1..518 1..489 649 44.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13394-PA 530 GE13394-PA 1..504 1..488 1627 79.8 Plus

LD47433.hyp Sequence

Translation from 983 to 2539

> LD47433.hyp
MFKRPYNTTPSNNNRTQNTITNPSPNSNSNPNQNQNRIQSQINNTTQDDS
QRRQVEAYRIYYEEIVVKQANARARLGDSSTRCSNSITSRNTSSSGRGSS
FVDKFADFVTHSSRTSPMPNPPAQSHVPPTTRNATNAILPPKTNSSSSSS
GGNSSSSGATSNNASTVVSSSASNGLKPAAKKTPVILLAARGAAKQPQLS
ILNGNTKAGTGNASGGGGGVTLVRVNATNRNQRQVIVAPEATPVEHQQPV
VEEEMLAEDDELDEDMDEDAVALSGLSSSTAQILRKFRIPKGTAVTAKSG
ENYLAMPTPTPSPPGVVNLVSSGVEASGYIENDDDIIEELNEDDLVEEII
DEEPSQEQPELQETTTANGLDLSSTNNATATTTGTAMLLAPQPPPLQLQT
VASNGTVTCFNLPANTILLQSPDGSIIAATQVPHPSKAGQQQLIALPGNV
ALATEQASQSQATSAPQATQTLILTADGTAIPILATNPQQQQQQQQQQQQ
QQQQQQAAAAAAAQLFAA*

LD47433.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17724-PE 542 CG17724-PE 1..518 1..518 2597 100 Plus
CG17724-PD 518 CG17724-PD 1..518 1..518 2597 100 Plus
CG17724-PB 518 CG17724-PB 1..518 1..518 2597 100 Plus
CG17724-PF 518 CG17724-PF 1..518 1..518 2597 100 Plus
CG17724-PA 518 CG17724-PA 1..518 1..518 2597 100 Plus