Clone LD47477 Report

Search the DGRC for LD47477

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:474
Well:77
Vector:pOT2
Associated Gene/Transcriptdgt5-RA
Protein status:LD47477.pep: gold
Preliminary Size:2331
Sequenced Size:2207

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8828 2001-07-04 Blastp of sequenced clone
CG8828 2003-01-01 Sim4 clustering to Release 3
dgt5 2008-04-29 Release 5.5 accounting
dgt5 2008-08-15 Release 5.9 accounting
dgt5 2008-12-18 5.12 accounting

Clone Sequence Records

LD47477.complete Sequence

2207 bp (2207 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052018

> LD47477.complete
AATGGCTGGTTCAAACGACTGCGCCTTTTTGCGAAAAATTTAATTAGTTG
CAAATCATGGCATACCAGGAGAAAATAACAGAATTTAAGAACTGGGCCAC
TAATCTTGGCTGCCCGCCCACTGCCCTGCCCACCGATGATGCACTCCGAA
GAATTTTTAAGTCCGGCTCCAGTTTACTTTTGAACCAGCTGCAATCCCGC
ATCCAGCCGGTGGATTACGTGCGGGAGGTGCGCGAGAACCTGCTGATTGC
CCAAGTGGCTCGCTACAAGGACAAAATGGTGCCGCTGGCCTCTAGGAGTT
TCCAGCCACCGGAGCTCCAGAGGTACCAAAAAATACAGGAGCTAAAGAAG
CACAAGGAGAAGGCGAACCAACAGCTTACGGAGGCCCGAAAAGAGTACCA
AAAGCTATCTGCCGGCATCAAGACCAAGAACATTCAAACCATCAGTGCTG
AGAACCGGAAGCAACTACTTGAATCCAAATGCAATATCCTTGACCTGAAG
CTGGAGTCGCTGAATAAGAACTACGACCAGGAGTTGAAGAACAAGATCCA
AATCTTGGGCACCACGCCCGTGAAGCTGAGTGCTAGAAATGCCAGCGAGG
CGCAGGCAACAAGGGCTGTGGAGCAGGCTCTCAAGCAGCTGGAGACCTTC
TATGGAATGTGTGACGATGGCAATGCGGTGAACAATTTAGCCGAGGCCAA
GCAGCGATTATGGGATCAGATGCGGAGCACCTTTGCGGATATTCCCAACT
CCCTGCTTCTGAACGTGGTAATGAAGATCAAAGAGGAGCAGCTGCAGCAC
ATCATGAAGCTGAATGAATCCAGAGGCGAATGCACAAATGATAAGCCACC
GCTGAATAACTATGAGGTCAAGTTACTAAAGACCAAGGCCGATATGCTGG
GTCTGGCGGCCAAATATTTCGCGGCCCAAAAGGAGCTGGAACTGAAGGAG
GAACGCTTTTGCCAAGACTACAGCGTCTTTGTGGACAAACTGCAATCAAA
GGTATACAGATTTAATGGCATAAGTTTGGGCGACGAGGAAAATGCGGATG
AACTGATTAGCGACTATCTGGTGCAGTACAACATGCGCAATTTTAATCGC
TCCCAAAACGAATTCCTTCGTGAGCAGATTGAGCAACTGCGTCTGGAGCT
AGATGCGGGCGCCAAGCAGCTGGAGAATCACGATCTAAAGCTAGGCTCTG
TGAAACAAGTATACGGCGACATTAACTCCAGCATCAATCGCATCCAGCAA
GATATGGTGCAGCTGTCACAGATCAAGGAGAAGATCCTGTTTTCGCGAAA
TATGATGAAGAACCTGCTGGACGATATGCAAGCGGCCACACAGAAACAAA
ACGCCAAGTCCCAGCTGATGAGCACTAAGCTAAAAGTCAGCAATATGTCC
ATGTTGGGTGCGGAGAGTTTTTGCCTGGCCAATGATAGTGTGTTCTCCAG
CACCAAGGTGGAGTTCGATGGCAACTGCAGCGCAATAAACTCAACGATGC
GTCGCAGTTTTGACAACAAAACGCTAGTGCCGGGCGGAGCAGCATCTACC
ACACTGATGGCTGCATCCGGAGCCACGCTACCATCGCATTTGCTGGAATT
CAATACATTTTTGGAAATACCGCTGGAAAAATTTAGCTGTACGCCGCGCG
CCTGCTCCTTCCTGTTGTCGGCCAATCCACTCATCGTCGAGGCCCAGGAG
TTGGCCTCCACCGTTCAACTGGCACCAGGCTATTTGCTAACACCCTTCGG
CGCTCTGCAGGAAGTCCGAAAACGCATTTTGTGGGCGTCAGCAATTGCCG
CACACACGTCTGAGTTGAAATTGAATTTGCAGCCGTTAATTGTTGATCCG
CACGATTTGAGACTGAAGGCGAGTCGTCAGCACGAGGAAATTGACCAATT
GCTGGACAACCTGATGGCCATTGGGGTGAAGACTCAGTTGCAGCTGGAAA
AGGCCGAGCGCATCTATCAGTTCCTGCTTGAGAATCCATTGCGACGCTAC
GTTCCACCCAGTAAACGATACAACAATGGCAGTTTCGCGGACTACGAGTC
CGAATTCAATCTCTACTATCGCATGACCACCAATGGAAGTTCGATGCGAG
CGCCACCTAATTAAGTACGTTATTTGTGTTGTGAATACTGTAGCCCTTTT
CAATTTTAAATTATATGAATATCCTGTACTGTTAGAATGAAAAAAAAAAA
AAAAAAA

LD47477.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
dgt5-RA 2307 dgt5-RA 112..2306 1..2195 10975 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8353631..8354855 1654..430 6050 99.6 Minus
chr2R 21145070 chr2R 8352964..8353311 2189..1842 1665 98.6 Minus
chr2R 21145070 chr2R 8354919..8355198 429..150 1400 100 Minus
chr2R 21145070 chr2R 8353377..8353565 1842..1654 930 99.5 Minus
chr2R 21145070 chr2R 8355263..8355413 151..1 740 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12466345..12467569 1654..430 6125 100 Minus
2R 25286936 2R 12465672..12466025 2195..1842 1770 100 Minus
2R 25286936 2R 12467633..12467912 429..150 1400 100 Minus
2R 25286936 2R 12466091..12466279 1842..1654 945 100 Minus
2R 25286936 2R 12467978..12468128 151..1 755 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12467544..12468768 1654..430 6125 100 Minus
2R 25260384 2R 12466871..12467224 2195..1842 1770 100 Minus
2R 25260384 2R 12468832..12469111 429..150 1400 100 Minus
2R 25260384 2R 12467290..12467478 1842..1654 945 100 Minus
2R 25260384 2R 12469177..12469327 151..1 755 100 Minus
Blast to na_te.dros performed 2019-03-16 11:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1224..1384 487..646 136 57.3 Plus
rooA 7621 rooA ROOA_LTR 7621bp 3303..3402 947..1046 122 60.8 Plus

LD47477.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:29:57 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8352964..8353310 1843..2189 98 <- Minus
chr2R 8353377..8353564 1655..1842 99 <- Minus
chr2R 8353631..8354855 430..1654 99 <- Minus
chr2R 8354919..8355196 152..429 100 <- Minus
chr2R 8355263..8355413 1..151 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:26 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 1..2058 57..2114 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:23 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 1..2058 57..2114 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:50:48 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 1..2058 57..2114 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:43 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 1..2058 57..2114 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:32 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 1..2058 57..2114 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:07:31 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 112..2300 1..2189 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:23 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 112..2300 1..2189 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:50:48 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 112..2300 1..2189 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:43 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 112..2300 1..2189 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:32 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
dgt5-RA 112..2300 1..2189 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:57 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12465678..12466024 1843..2189 100 <- Minus
2R 12466091..12466278 1655..1842 100 <- Minus
2R 12466345..12467569 430..1654 100 <- Minus
2R 12467633..12467910 152..429 100 <- Minus
2R 12467978..12468128 1..151 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:57 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12465678..12466024 1843..2189 100 <- Minus
2R 12466091..12466278 1655..1842 100 <- Minus
2R 12466345..12467569 430..1654 100 <- Minus
2R 12467633..12467910 152..429 100 <- Minus
2R 12467978..12468128 1..151 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:57 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12465678..12466024 1843..2189 100 <- Minus
2R 12466091..12466278 1655..1842 100 <- Minus
2R 12466345..12467569 430..1654 100 <- Minus
2R 12467633..12467910 152..429 100 <- Minus
2R 12467978..12468128 1..151 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:50:48 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8355483..8355633 1..151 100   Minus
arm_2R 8353183..8353529 1843..2189 100 <- Minus
arm_2R 8353596..8353783 1655..1842 100 <- Minus
arm_2R 8353850..8355074 430..1654 100 <- Minus
arm_2R 8355138..8355415 152..429 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:32 Download gff for LD47477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12467290..12467477 1655..1842 100 <- Minus
2R 12466877..12467223 1843..2189 100 <- Minus
2R 12467544..12468768 430..1654 100 <- Minus
2R 12468832..12469109 152..429 100 <- Minus
2R 12469177..12469327 1..151 100   Minus

LD47477.pep Sequence

Translation from 56 to 2113

> LD47477.pep
MAYQEKITEFKNWATNLGCPPTALPTDDALRRIFKSGSSLLLNQLQSRIQ
PVDYVREVRENLLIAQVARYKDKMVPLASRSFQPPELQRYQKIQELKKHK
EKANQQLTEARKEYQKLSAGIKTKNIQTISAENRKQLLESKCNILDLKLE
SLNKNYDQELKNKIQILGTTPVKLSARNASEAQATRAVEQALKQLETFYG
MCDDGNAVNNLAEAKQRLWDQMRSTFADIPNSLLLNVVMKIKEEQLQHIM
KLNESRGECTNDKPPLNNYEVKLLKTKADMLGLAAKYFAAQKELELKEER
FCQDYSVFVDKLQSKVYRFNGISLGDEENADELISDYLVQYNMRNFNRSQ
NEFLREQIEQLRLELDAGAKQLENHDLKLGSVKQVYGDINSSINRIQQDM
VQLSQIKEKILFSRNMMKNLLDDMQAATQKQNAKSQLMSTKLKVSNMSML
GAESFCLANDSVFSSTKVEFDGNCSAINSTMRRSFDNKTLVPGGAASTTL
MAASGATLPSHLLEFNTFLEIPLEKFSCTPRACSFLLSANPLIVEAQELA
STVQLAPGYLLTPFGALQEVRKRILWASAIAAHTSELKLNLQPLIVDPHD
LRLKASRQHEEIDQLLDNLMAIGVKTQLQLEKAERIYQFLLENPLRRYVP
PSKRYNNGSFADYESEFNLYYRMTTNGSSMRAPPN*

LD47477.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12450-PA 687 GF12450-PA 1..685 1..685 2927 79.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22576-PA 684 GG22576-PA 1..684 1..685 3396 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19917-PA 688 GH19917-PA 1..688 1..682 2119 59.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
dgt5-PB 685 CG8828-PB 1..685 1..685 3464 100 Plus
dgt5-PA 685 CG8828-PA 1..685 1..685 3464 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19874-PA 689 GI19874-PA 1..689 1..682 2129 61.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17348-PA 673 GL17348-PA 1..671 1..682 2349 66.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21351-PA 678 GA21351-PA 1..676 1..682 2393 67 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20358-PA 645 GM20358-PA 1..645 1..685 3115 88.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25837-PA 685 GD25837-PA 1..685 1..685 3592 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15044-PA 695 GJ15044-PA 1..695 1..682 2348 63.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22108-PA 672 GK22108-PA 1..669 1..678 2182 60.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13445-PA 685 GE13445-PA 1..685 1..685 3415 92.6 Plus

LD47477.hyp Sequence

Translation from 56 to 2113

> LD47477.hyp
MAYQEKITEFKNWATNLGCPPTALPTDDALRRIFKSGSSLLLNQLQSRIQ
PVDYVREVRENLLIAQVARYKDKMVPLASRSFQPPELQRYQKIQELKKHK
EKANQQLTEARKEYQKLSAGIKTKNIQTISAENRKQLLESKCNILDLKLE
SLNKNYDQELKNKIQILGTTPVKLSARNASEAQATRAVEQALKQLETFYG
MCDDGNAVNNLAEAKQRLWDQMRSTFADIPNSLLLNVVMKIKEEQLQHIM
KLNESRGECTNDKPPLNNYEVKLLKTKADMLGLAAKYFAAQKELELKEER
FCQDYSVFVDKLQSKVYRFNGISLGDEENADELISDYLVQYNMRNFNRSQ
NEFLREQIEQLRLELDAGAKQLENHDLKLGSVKQVYGDINSSINRIQQDM
VQLSQIKEKILFSRNMMKNLLDDMQAATQKQNAKSQLMSTKLKVSNMSML
GAESFCLANDSVFSSTKVEFDGNCSAINSTMRRSFDNKTLVPGGAASTTL
MAASGATLPSHLLEFNTFLEIPLEKFSCTPRACSFLLSANPLIVEAQELA
STVQLAPGYLLTPFGALQEVRKRILWASAIAAHTSELKLNLQPLIVDPHD
LRLKASRQHEEIDQLLDNLMAIGVKTQLQLEKAERIYQFLLENPLRRYVP
PSKRYNNGSFADYESEFNLYYRMTTNGSSMRAPPN*

LD47477.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
dgt5-PB 685 CG8828-PB 1..685 1..685 3464 100 Plus
dgt5-PA 685 CG8828-PA 1..685 1..685 3464 100 Plus