Clone LD47536 Report

Search the DGRC for LD47536

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:475
Well:36
Vector:pOT2
Associated Gene/TranscriptGs1-RB
Protein status:LD47536.pep: gold
Preliminary Size:1808
Sequenced Size:1715

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2718 2001-01-01 Release 2 assignment
CG2718 2001-09-19 Blastp of sequenced clone
Gs1 2008-04-29 Release 5.5 accounting
Gs1 2008-08-15 Release 5.9 accounting
Gs1 2008-12-18 5.12 accounting

Clone Sequence Records

LD47536.complete Sequence

1715 bp (1715 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058730

> LD47536.complete
CACAAGACTTCCAAACATCGAATTGGTCGGGTGTCCCCAACAGTCGCTCC
GCAGCCCCTGACAGAAACAGAAACGAAAACCGAAAGTACCGCAATCCAAA
ATTACCAAAAGACCTGTCCAACCAGCGACTGTTTAACCAATCATATAACT
GTAAAGTGGAAAAACGAGCAGAGCACGAACCAAGATGGCACTACGCGTGG
CAGGACTCTTCCTGAAGAAGGAGCTGGTGGCTCCCGCAACACAGCAGCTG
CGTCTGCTGCGTACTGGCAATACCACCCGCTCCCAGTTCTTGGCCAACTC
CCCCAACACGGCTCTAGACAAGAGCATTCTGCAGAGGTACCGCAACCTGG
AAACGCCGGCCAATCGAGTGCAGGCTACTTACTTATGGATCGACGGTACC
GGCGAGAACATTCGCCTCAAGGATCGCGTTTTGGACAAAGTACCCAGCTC
CGTGGAGGACTTGCCGGATTGGCAGTACGACGGCAGTTCCACCTACCAGG
CCCATGGCGAGAACTCGGACACCACGCTCAAGCCACGCGCCATATATCGC
GATCCCTTTAAGCCGGGAAAGAACGACGTAATTGTCCTGTGCGACACCTA
CAGCGCCGACGGCAAGCCGACGGCGTCCAACAAGCGTGCCGCGTTCCAGG
CAGCCATTGACCTAATTAGCGATCAGGAGCCCTGGTTCGGCATTGAGCAA
GAATACACTTTATTAGACGTGGACGGACGTCCCTTCGGCTGGCCGGAGAA
CGGTTTCCCAGCCCCACAAGGTCCTTACTACTGCGGCGTGGGAGCTGACC
GTGTGTACGCTCGCGATCTTGTGGAGGCCCACGTCGTGGCCTGCCTGTAT
GCTGGGATCGACTTCGCCGGCACCAATGCCGAGGTAATGCCCGCGCAGTG
GGAGTTCCAAATTGGTCCAGCCGGGATTAAGGCATGTGACGATTTATGGG
TGTCGCGATATATTTTGCAGCGCATAGCTGAGGAGTATGGCGTAGTGGTC
ACCTTTGACCCCAAACCGATGGAGGGTCAGTGGAACGGAGCCGGCGCGCA
TACCAACTTTTCCACAAAGGAGATGCGTGCTGATGGCGGAATCAAGGCCA
TCGAGGAAGCTATCGAGAAGCTGAGCAAGCGCCACGAGCGGCACATCAAG
GCATACGACCCCAAGGAAGGCAAAGACAATGAACGGCGCCTCGTGGGACG
TCTTGAGACTTCTAGCATCGATAAGTTTTCTTGGGGCGTGGCCAACCGGG
CCGTAAGTGTGCGAGTGCCGCGTGGCGTTGCGACGGCCGGCAAAGGATAC
CTCGAAGACCGGCGGCCAAGCTCCAACTGTGATCCCTACGCCGTGTGCAA
CGCCATTGTTCGCACCTGCCTGCTCAACGAGTAGGCTGTGAGCGGTGCAA
CAGATGTTTAATTTTTTGTACATTATGTTTTATGGAACTGTGAAGCGTAT
CCGATCATTTGGTTATATTTACATTGAACTGAAGCAAAATTTAGTTTGCT
TGTGCAAAAAAGACAGGAGACCGAGGCACGAAAAGCGTGCGCTTAGAATT
TAAGAACGTGGGTGGGTGGCAAGAAGAACTAAGCTAAAGCGAAATTTCCT
TAAAGCGATGGGGCCTCATGAATACTTTGCCATATATCTCACAAACTACG
TATATCTATCATTGCTTTAATCTAAATAATAAAAAACATTGTACTCTAAA
AAAAAAAAAAAAAAA

LD47536.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-RB 2610 Gs1-RB 156..1853 1..1698 8490 100 Plus
Gs1.a 2610 Gs1.a 156..1853 1..1698 8490 100 Plus
Gs1-RC 2413 Gs1-RC 416..1937 177..1698 7610 100 Plus
Gs1-RC 2413 Gs1-RC 20..196 1..177 885 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 132512..134032 177..1697 7590 99.9 Plus
chr2L 23010047 chr2L 132116..132292 1..177 885 100 Plus
chrX 22417052 chrX 11320170..11320273 806..909 205 79.8 Plus
chrX 22417052 chrX 11319927..11320041 675..789 200 78.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 132475..133996 177..1698 7610 100 Plus
2L 23513712 2L 132079..132255 1..177 885 100 Plus
X 23542271 X 11428742..11428856 675..789 215 79.1 Plus
X 23542271 X 11428985..11429088 806..909 205 79.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 132475..133996 177..1698 7610 100 Plus
2L 23513712 2L 132079..132255 1..177 885 100 Plus
X 23527363 X 11436840..11436954 675..789 215 79.1 Plus
X 23527363 X 11437116..11437186 839..909 190 84.5 Plus
Blast to na_te.dros performed on 2019-03-15 19:57:05 has no hits.

LD47536.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:58:03 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 132116..132292 1..177 100 -> Plus
chr2L 132513..134032 178..1697 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:35 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 1..1200 185..1384 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:45 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RD 1..1200 185..1384 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:03:58 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 1..1200 185..1384 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:28:57 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 1..1200 185..1384 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:10 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 1..1200 185..1384 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:40 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 20..1716 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:45 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 20..1716 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:58 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 3..1699 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:28:57 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 20..1716 1..1697 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:10 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 3..1699 1..1697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:03 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
2L 132079..132255 1..177 100 -> Plus
2L 132476..133995 178..1697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:03 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
2L 132079..132255 1..177 100 -> Plus
2L 132476..133995 178..1697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:03 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
2L 132079..132255 1..177 100 -> Plus
2L 132476..133995 178..1697 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:58 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 132079..132255 1..177 100 -> Plus
arm_2L 132476..133995 178..1697 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:24 Download gff for LD47536.complete
Subject Subject Range Query Range Percent Splice Strand
2L 132476..133995 178..1697 100   Plus
2L 132079..132255 1..177 100 -> Plus

LD47536.pep Sequence

Translation from 184 to 1383

> LD47536.pep
MALRVAGLFLKKELVAPATQQLRLLRTGNTTRSQFLANSPNTALDKSILQ
RYRNLETPANRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDG
SSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNK
RAAFQAAIDLISDQEPWFGIEQEYTLLDVDGRPFGWPENGFPAPQGPYYC
GVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPAGIKA
CDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRAD
GGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSW
GVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLLNE*

LD47536.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14864-PA 400 GF14864-PA 1..400 1..399 2025 93.2 Plus
Dana\GF22546-PA 299 GF22546-PA 3..298 33..328 1063 64.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24698-PA 399 GG24698-PA 1..399 1..399 2099 97.7 Plus
Dere\GG18416-PA 369 GG18416-PA 3..369 33..399 1308 64.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10061-PA 400 GH10061-PA 1..400 1..399 1960 89.2 Plus
Dgri\GH12401-PA 369 GH12401-PA 3..369 33..399 1333 65.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-PD 399 CG2718-PD 1..399 1..399 2117 100 Plus
Gs1-PB 399 CG2718-PB 1..399 1..399 2117 100 Plus
Gs1-PC 399 CG2718-PC 1..399 1..399 2117 100 Plus
Gs2-PB 369 CG1743-PB 3..369 33..399 1303 64.9 Plus
Gs2-PF 369 CG1743-PF 3..369 33..399 1302 64.7 Plus
Gs2-PE 369 CG1743-PE 3..369 33..399 1302 64.7 Plus
Gs2-PC 369 CG1743-PC 3..369 33..399 1302 64.7 Plus
Gs2-PD 373 CG1743-PD 7..373 33..399 1302 64.7 Plus
Gs2-PA 266 CG1743-PA 1..266 135..399 997 67.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16461-PA 400 GI16461-PA 1..400 1..399 1966 89.8 Plus
Dmoj\GI15717-PA 369 GI15717-PA 3..369 33..399 1324 64.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13945-PA 400 GL13945-PA 1..400 1..399 2003 93 Plus
Dper\GL14860-PA 369 GL14860-PA 3..369 33..399 1313 64.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15446-PA 400 GA15446-PA 1..400 1..399 2003 93 Plus
Dpse\GA14508-PA 369 GA14508-PA 3..369 33..399 1313 64.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16716-PA 399 GM16716-PA 1..399 1..399 2122 99.2 Plus
Dsec\GM13079-PA 369 GM13079-PA 2..369 32..399 1313 64.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23002-PA 399 GD23002-PA 1..399 1..399 2116 99 Plus
Dsim\GD17021-PA 310 GD17021-PA 4..310 93..399 1143 67.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16218-PA 400 GJ16218-PA 1..400 1..399 1988 90.8 Plus
Dvir\GJ15245-PA 369 GJ15245-PA 3..369 33..399 1330 65.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24607-PA 397 GK24607-PA 1..397 1..399 1940 90.2 Plus
Dwil\GK16230-PA 369 GK16230-PA 3..369 33..399 1310 64.9 Plus
Dwil\GK24485-PA 367 GK24485-PA 3..367 33..399 1218 60.6 Plus
Dwil\GK24614-PA 367 GK24614-PA 5..367 35..399 1122 57.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16593-PA 399 GE16593-PA 1..399 1..399 2085 96.5 Plus
Dyak\GE15935-PA 369 GE15935-PA 3..369 33..399 1310 64.7 Plus

LD47536.hyp Sequence

Translation from 184 to 1383

> LD47536.hyp
MALRVAGLFLKKELVAPATQQLRLLRTGNTTRSQFLANSPNTALDKSILQ
RYRNLETPANRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDG
SSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNK
RAAFQAAIDLISDQEPWFGIEQEYTLLDVDGRPFGWPENGFPAPQGPYYC
GVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPAGIKA
CDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRAD
GGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSW
GVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLLNE*

LD47536.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-PD 399 CG2718-PD 1..399 1..399 2117 100 Plus
Gs1-PB 399 CG2718-PB 1..399 1..399 2117 100 Plus
Gs1-PC 399 CG2718-PC 1..399 1..399 2117 100 Plus
Gs2-PB 369 CG1743-PB 3..369 33..399 1303 64.9 Plus
Gs2-PF 369 CG1743-PF 3..369 33..399 1302 64.7 Plus