Clone LD47549 Report

Search the DGRC for LD47549

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:475
Well:49
Vector:pOT2
Associated Gene/TranscriptCG4572-RA
Protein status:LD47549.pep: gold
Preliminary Size:1952
Sequenced Size:1830

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4572 2001-01-01 Release 2 assignment
CG4572 2001-07-04 Blastp of sequenced clone
CG4572 2003-01-01 Sim4 clustering to Release 3
CG4572 2008-04-29 Release 5.5 accounting
CG4572 2008-08-15 Release 5.9 accounting
CG4572 2008-12-18 5.12 accounting

Clone Sequence Records

LD47549.complete Sequence

1830 bp (1830 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052022

> LD47549.complete
GCAAGTGAGAGAACTGATTTAAACCCCTTATCGGCCGATTCGTGAGCAGG
TCGGGGCGATAATAAGAATATAAGAATACATATACATAAGCTGAATAAGC
AAAGCAACCACTGACAATTCGATCGCTTTTCAGTCGAATCAGCGCAGTTG
AACAATGAAAACTGCAACTCATTGCGCATTTTTAATTATCGCGACTATAG
TCGCAATAAGCGGAGCAAAAGGAGTAGAGGGGGAACGCCCCTACAGGCGG
AGCTTCATCAATCCGTATCCACGCTACCAGTTCTTTGACGATGGTGTCGA
TCCCGGGGAGCCCCTGTTCCTGACGCCCCTGATCAACAATGCTTCGATGA
GCAAGCAAGAGGTTCAAAAGCTGGCCCGCGTCGTAGGCTCCCAGTTCCAT
GGCGTTGAGAGCTACTCCGGCTATTTGACCGTGGACCCTGGCTTCAAATC
CAACATGTTCTTCTGGTACTTCCCCGCCGAGCAGGAGCCGGAATATGCGC
CAGTGGTCCTGTGGCTTCAGGGTGGACCAGGTGCCTCCTCGCTCTTCGGT
TTGTTCACAGAGAATGGACCACTAGAGTTGGATGGTCATGGGAAGCTTCA
GAAACGCAACTATACCTGGAGCAAGACACACAATCTCATCTACATTGACA
ATCCCGTGGGCACTGGCTTTAGTTTTACAGAGAACGATGCCGGCTATGCT
ACGAACGAGAAGGATGTGGGCCGCAATCTGCACGAGGCTGTGATGCAGCT
GTACGAACTCTTCGAGTGGAGCAACTCCTCTGGTTTCTGGGTCACCGGCG
AGTCCTATGCCGGAAAATACGTTCCCGCCCTGGCTTACCACATCCACAAG
GTACAAAATGCCATAGAGACCCGCGTCTATGTGCCGCTCAAGGGCGTGGC
CATCGGAAATGGTCTCTCGGATCCGCTGCATCAGCTGAAGTACGGTGACT
ATCTCTACCAGCTGGGCCTGATCGACGAGCACGGACTGCAGAGTTTCCAC
GATGCCGAGGCAAAGGGTGCTGAATGCATTAAGAGTCACGACATGGAGTG
CGCCTTCGACGTATTTGATTCCCTAATCAACGGGGACCTTACCAATGGCT
CACTGTTCAGCAACCTTACTGGATACAACTGGTACTACAACTACTTGAAG
ACGCATGATGATGATGGCGCCAACTTGGGCGAATTTCTGCAGGCGGGCGC
CACTCGGCGGGCAATTCATGTGGGCAATAAGACATTCCATGATCTGGACA
AGGAGAACAAGGTGGAACTTCACTTGAAGAAGGATATCATGGACTCGGTG
GCCCCGTGGATAGCCGAACTGCTGGCCCACTATACTGTGTGCATCTACAG
CGGGCAGCTAGACATTATTGTTGCCTATCCACTGACGCGCAATTATCTCA
ACCAACTAAAGTTCCCCGGCTCGGACAAGTACAAGGTGGCTCCCCGCGAA
GTGTGGCGCGTTGGGAAGGAAGTGGCCGGCTATGTCAAGCACGCCGGACA
TCTTGTGGAGATCATGGTCCGCAATGCCGGGCACATGGCTCCTCACGATC
AGCCCAAGTGGCTGTACATGATGATTGATCACCTTACTCATTACAAGCAC
TAGGAAATGCGTACTTAAACTATTCAGTACAATTTGGAGACCAAATTTAA
GCCTTTGTTTTTAAAATTAATCATGAATAATTTGGTGTGAGTTTTGAATG
CATAAATATGTTGATGAGAGCATTGGGTTGTTAATACTCAACTAAATTCA
TATAATTTGTTACAGAACTGTATATAACAACAAAGATTAAAACATCAAAA
AGAAAATCAAAAAAAAAAAAAAAAAAAAAA

LD47549.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-RB 1876 CG4572-RB 69..1876 1..1808 9040 100 Plus
CG4572-RD 1796 CG4572-RD 111..1795 132..1816 8410 99.9 Plus
CG4572-RA 1820 CG4572-RA 143..1820 131..1808 8390 100 Plus
CG4572-RA 1820 CG4572-RA 97..145 1..49 245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15686430..15688237 1808..1 9040 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19862509..19864324 1816..1 9065 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19603340..19605155 1816..1 9065 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 20:45:56 has no hits.

LD47549.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:47:09 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15686430..15688237 1..1808 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:38 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RC 1..1449 155..1603 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:48 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RD 1..1449 155..1603 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:40 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 1..1449 155..1603 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:10 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RC 1..1449 155..1603 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:52:48 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 1..1449 155..1603 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:08:08 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RB 69..1876 1..1808 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:48 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RB 69..1876 1..1808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:40 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RB 70..1877 1..1808 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:10 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RB 69..1876 1..1808 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:48 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
CG4572-RB 70..1877 1..1808 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:09 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19862517..19864324 1..1808 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:09 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19862517..19864324 1..1808 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:09 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19862517..19864324 1..1808 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:40 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15688239..15690046 1..1808 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:01 Download gff for LD47549.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19603348..19605155 1..1808 100   Minus

LD47549.pep Sequence

Translation from 154 to 1602

> LD47549.pep
MKTATHCAFLIIATIVAISGAKGVEGERPYRRSFINPYPRYQFFDDGVDP
GEPLFLTPLINNASMSKQEVQKLARVVGSQFHGVESYSGYLTVDPGFKSN
MFFWYFPAEQEPEYAPVVLWLQGGPGASSLFGLFTENGPLELDGHGKLQK
RNYTWSKTHNLIYIDNPVGTGFSFTENDAGYATNEKDVGRNLHEAVMQLY
ELFEWSNSSGFWVTGESYAGKYVPALAYHIHKVQNAIETRVYVPLKGVAI
GNGLSDPLHQLKYGDYLYQLGLIDEHGLQSFHDAEAKGAECIKSHDMECA
FDVFDSLINGDLTNGSLFSNLTGYNWYYNYLKTHDDDGANLGEFLQAGAT
RRAIHVGNKTFHDLDKENKVELHLKKDIMDSVAPWIAELLAHYTVCIYSG
QLDIIVAYPLTRNYLNQLKFPGSDKYKVAPREVWRVGKEVAGYVKHAGHL
VEIMVRNAGHMAPHDQPKWLYMMIDHLTHYKH*

LD47549.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17355-PA 478 GF17355-PA 1..478 1..482 2318 88.4 Plus
Dana\GF24074-PA 439 GF24074-PA 30..438 89..480 378 27.6 Plus
Dana\GF14968-PA 428 GF14968-PA 40..427 90..480 376 27.2 Plus
Dana\GF14967-PA 430 GF14967-PA 35..424 89..480 362 30 Plus
Dana\GF24075-PA 446 GF24075-PA 37..445 93..480 355 28.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15819-PA 482 GG15819-PA 1..482 1..482 2499 95.2 Plus
Dere\GG14645-PA 439 GG14645-PA 30..438 89..480 408 28.9 Plus
Dere\GG24186-PA 427 GG24186-PA 33..426 83..480 360 26.5 Plus
Dere\GG24185-PA 425 GG24185-PA 30..419 89..480 351 29.2 Plus
Dere\GG14646-PA 446 GG14646-PA 35..445 89..480 350 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21639-PA 479 GH21639-PA 1..479 1..482 2091 80.5 Plus
Dgri\GH16039-PA 442 GH16039-PA 33..428 89..467 379 28.6 Plus
Dgri\GH11350-PA 665 GH11350-PA 277..664 89..480 372 29 Plus
Dgri\GH16040-PA 446 GH16040-PA 36..445 89..480 340 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-PD 482 CG4572-PD 1..482 1..482 2612 100 Plus
CG4572-PB 482 CG4572-PB 1..482 1..482 2612 100 Plus
CG4572-PA 482 CG4572-PA 1..482 1..482 2612 100 Plus
CG32483-PA 439 CG32483-PA 17..438 82..480 414 29 Plus
CG31821-PB 427 CG31821-PB 32..421 89..480 393 30.7 Plus
CG31821-PA 427 CG31821-PA 32..421 89..480 393 30.7 Plus
CG31823-PA 427 CG31823-PA 33..426 83..480 391 27.7 Plus
hiro-PA 446 CG3344-PA 35..445 89..480 366 28.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20092-PA 478 GI20092-PA 1..477 1..481 2031 78.8 Plus
Dmoj\GI19272-PA 470 GI19272-PA 1..467 1..479 1605 61.9 Plus
Dmoj\GI12303-PA 442 GI12303-PA 34..441 89..480 390 29.7 Plus
Dmoj\GI12302-PA 442 GI12302-PA 33..441 89..480 388 28.1 Plus
Dmoj\GI12304-PA 450 GI12304-PA 34..442 89..480 382 29.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15326-PA 426 GL15326-PA 65..425 116..480 377 28.2 Plus
Dper\GL20838-PA 445 GL20838-PA 35..444 89..480 367 28.1 Plus
Dper\GL20837-PA 439 GL20837-PA 30..438 89..480 364 27.5 Plus
Dper\GL15319-PA 415 GL15319-PA 33..414 89..480 363 27 Plus
Dper\GL15325-PA 426 GL15325-PA 11..421 70..480 353 29.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18267-PA 483 GA18267-PA 1..483 1..482 2328 89 Plus
Dpse\GA16505-PA 426 GA16505-PA 65..425 116..480 377 28.2 Plus
Dpse\GA16937-PA 439 GA16937-PA 30..438 89..480 364 27.5 Plus
Dpse\GA17392-PA 445 GA17392-PA 35..444 89..480 362 27.9 Plus
Dpse\GA16504-PA 426 GA16504-PA 11..421 70..480 353 29.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26891-PA 482 GM26891-PA 1..482 1..482 2534 97.1 Plus
Dsec\GM17924-PA 427 GM17924-PA 33..426 83..480 385 27.8 Plus
Dsec\GM14261-PA 446 GM14261-PA 35..445 89..480 375 29.4 Plus
Dsec\GM17923-PA 425 GM17923-PA 30..419 89..480 364 29.5 Plus
Dsec\GM14260-PA 262 GM14260-PA 30..160 89..221 219 40.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20098-PA 482 GD20098-PA 1..482 1..482 2542 97.7 Plus
Dsim\GD13517-PA 439 GD13517-PA 30..438 89..480 409 29.2 Plus
Dsim\GD13518-PA 446 GD13518-PA 35..445 89..480 378 29.1 Plus
Dsim\GD11968-PA 285 GD11968-PA 18..284 213..480 235 27.2 Plus
Dsim\GD21932-PA 123 GD21932-PA 37..122 395..480 154 37.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19859-PA 479 GJ19859-PA 1..479 1..482 2134 80.7 Plus
Dvir\GJ22150-PA 481 GJ22150-PA 1..479 1..480 1892 71.1 Plus
Dvir\GJ13239-PA 442 GJ13239-PA 33..441 89..480 398 28.6 Plus
Dvir\GJ13240-PA 444 GJ13240-PA 34..443 89..480 367 29.5 Plus
Dvir\GJ18041-PA 478 GJ18041-PA 90..477 89..480 347 28.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22811-PA 481 GK22811-PA 1..481 1..482 2224 83.9 Plus
Dwil\GK16683-PA 445 GK16683-PA 34..444 89..480 408 29.4 Plus
Dwil\GK24263-PA 426 GK24263-PA 35..425 90..480 384 29.3 Plus
Dwil\GK16682-PA 442 GK16682-PA 33..441 89..480 362 27.4 Plus
Dwil\GK24262-PA 428 GK24262-PA 15..420 73..480 345 28.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25110-PA 482 GE25110-PA 1..482 1..482 2471 94.2 Plus
Dyak\GE21005-PA 439 GE21005-PA 30..438 89..480 411 28.9 Plus
Dyak\GE19379-PA 427 GE19379-PA 66..426 116..480 391 28.6 Plus
Dyak\GE19378-PA 425 GE19378-PA 30..419 89..480 363 30.1 Plus
Dyak\GE21006-PA 446 GE21006-PA 35..445 89..480 355 28.4 Plus

LD47549.hyp Sequence

Translation from 154 to 1602

> LD47549.hyp
MKTATHCAFLIIATIVAISGAKGVEGERPYRRSFINPYPRYQFFDDGVDP
GEPLFLTPLINNASMSKQEVQKLARVVGSQFHGVESYSGYLTVDPGFKSN
MFFWYFPAEQEPEYAPVVLWLQGGPGASSLFGLFTENGPLELDGHGKLQK
RNYTWSKTHNLIYIDNPVGTGFSFTENDAGYATNEKDVGRNLHEAVMQLY
ELFEWSNSSGFWVTGESYAGKYVPALAYHIHKVQNAIETRVYVPLKGVAI
GNGLSDPLHQLKYGDYLYQLGLIDEHGLQSFHDAEAKGAECIKSHDMECA
FDVFDSLINGDLTNGSLFSNLTGYNWYYNYLKTHDDDGANLGEFLQAGAT
RRAIHVGNKTFHDLDKENKVELHLKKDIMDSVAPWIAELLAHYTVCIYSG
QLDIIVAYPLTRNYLNQLKFPGSDKYKVAPREVWRVGKEVAGYVKHAGHL
VEIMVRNAGHMAPHDQPKWLYMMIDHLTHYKH*

LD47549.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-PD 482 CG4572-PD 1..482 1..482 2612 100 Plus
CG4572-PB 482 CG4572-PB 1..482 1..482 2612 100 Plus
CG4572-PA 482 CG4572-PA 1..482 1..482 2612 100 Plus
CG32483-PA 439 CG32483-PA 17..438 82..480 414 29 Plus
CG31821-PB 427 CG31821-PB 32..421 89..480 393 30.7 Plus