Clone LD47553 Report

Search the DGRC for LD47553

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:475
Well:53
Vector:pOT2
Associated Gene/Transcriptmats-RA
Protein status:LD47553.pep: gold
Preliminary Size:1351
Sequenced Size:1268

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13852 2001-10-10 Blastp of sequenced clone
mats 2008-04-29 Release 5.5 accounting
mats 2008-08-15 Release 5.9 accounting
mats 2008-12-18 5.12 accounting

Clone Sequence Records

LD47553.complete Sequence

1268 bp (1268 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061520

> LD47553.complete
TCCCTCTCGCACTTTCATCAACTGTCTCTGTGTGTGAAAGCAATTTTATT
TTTATTTATAACAAATTTTTTGCGTTTATAAACACAACAGAATTAACTAG
TTGGCTCGGCACACTTCCTGGAACCGCTCGCATCAGCTGTTGGGCTACGG
CACTAGTTAACAGACCGACCAACTGGAGGCCAGATACAGATACCATCATT
GTCATTTCCCAATTGACCAGAGAAAGAAACCTGCTGCGAATTCCAGTCAC
TTTTCTTTAATTATTATTCGGCGCTAATTGTGTAAAAATCGGCGGAATAA
AGCTGCTGACACGACACAGAAGAGCCGAAAAAGCGGTGTGGCACTCGCCG
GAAAAGTCTACGCATAGGAAAATTCCATTGGAGGCTCAGTGAAAGGCGAA
GCACAGCAATTGCATGCCATGGACTTCTTGTTCGGTTCCCGTTCCAGCAA
GACCTTCAAGCCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATC
TCATGAAGCATGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCA
GTGGCCCTTCCAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACAC
CGTGGACTTTTTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGT
TCTGCACCGAGGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAG
TACCACTGGGCCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGC
GCCCAAGTATATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACG
ACGAGACCCTGTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTT
CACTCCTCCGCCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCA
CATCTACCACCAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCC
ATCTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAAT
CTGATTGAGCGGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCT
GACGGCTAAGGATGAGCGGCAGATATAGGAATCACTGCATGGAGCCGCGA
ATTTTCGCGATTCCGGCGGCGGTGGTGGTGGTCTGCGCTTGCAGTTGGAC
TTGTGATGAAAGCGCTCTGGCAGACTCGTGTATTACGCTTTAGTTAGTTA
CCGCCAATACTTTTATGTTTCGTTCATTGCTTCATGGGGTGCCTCCCACT
AAAAAAAAAAAAAAAAAA

LD47553.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
mats-RA 1501 mats-RA 45..1312 1..1268 6295 99.7 Plus
mats.b 1501 mats.b 45..1312 1..1268 6295 99.7 Plus
mats.a 1750 mats.a 45..1312 1..1268 6295 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18245744..18246394 600..1250 3240 99.8 Plus
chr3R 27901430 chr3R 18244710..18245141 1..432 2130 99.5 Plus
chr3R 27901430 chr3R 18245516..18245682 433..599 820 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22422196..22422864 600..1268 3300 99.6 Plus
3R 32079331 3R 22421171..22421602 1..432 2160 100 Plus
3R 32079331 3R 22421968..22422134 433..599 835 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22163027..22163695 600..1268 3300 99.5 Plus
3R 31820162 3R 22162002..22162433 1..432 2160 100 Plus
3R 31820162 3R 22162799..22162965 433..599 835 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:48:31 has no hits.

LD47553.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:49:23 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18244710..18245141 1..432 92 -> Plus
chr3R 18245516..18245682 433..599 99 -> Plus
chr3R 18245744..18246394 600..1250 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:40 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 1..660 419..1078 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:50:14 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 1..660 419..1078 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:43 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 1..660 419..1078 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:19:12 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 1..660 419..1078 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:42:30 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 1..660 419..1078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:34:52 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 17..1266 1..1250 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:50:14 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 17..1266 1..1250 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:43 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 11..1260 1..1250 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:19:12 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 17..1266 1..1250 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:42:30 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 11..1260 1..1250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:23 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22421171..22421602 1..432 100 -> Plus
3R 22421968..22422134 433..599 100 -> Plus
3R 22422196..22422846 600..1250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:23 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22421171..22421602 1..432 100 -> Plus
3R 22421968..22422134 433..599 100 -> Plus
3R 22422196..22422846 600..1250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:23 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22421171..22421602 1..432 100 -> Plus
3R 22421968..22422134 433..599 100 -> Plus
3R 22422196..22422846 600..1250 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:43 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18246893..18247324 1..432 100 -> Plus
arm_3R 18247690..18247856 433..599 100 -> Plus
arm_3R 18247918..18248568 600..1250 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:55:58 Download gff for LD47553.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22162002..22162433 1..432 100 -> Plus
3R 22162799..22162965 433..599 100 -> Plus
3R 22163027..22163677 600..1250 100   Plus

LD47553.pep Sequence

Translation from 418 to 1077

> LD47553.pep
MDFLFGSRSSKTFKPKKNIPEGTHQYDLMKHAAATLGSGNLRNAVALPDG
EDLNEWVAVNTVDFFNQINMLYGTITEFCTEETCGIMSAGPKYEYHWADG
LTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFHSSAKT
ILKRLFRVYAHIYHQHFTEVVTLGEEAHLNTSFKHFIFFVQEFNLIERRE
LAPLQELIDKLTAKDERQI*

LD47553.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18448-PA 221 GF18448-PA 3..221 1..219 1174 98.6 Plus
Dana\GF15759-PA 220 GF15759-PA 6..215 3..211 622 52.4 Plus
Dana\GF24543-PA 545 GF24543-PA 135..313 36..216 371 40.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11134-PA 219 GG11134-PA 1..219 1..219 1184 99.5 Plus
Dere\GG10099-PA 220 GG10099-PA 6..215 3..211 626 52.9 Plus
Dere\GG13915-PA 542 GG13915-PA 131..309 36..216 371 40.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13388-PA 219 GH13388-PA 1..219 1..219 1169 98.2 Plus
Dgri\GH13517-PA 220 GH13517-PA 15..215 12..211 608 53.2 Plus
Dgri\GH16639-PA 504 GH16639-PA 63..241 36..216 368 40.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
mats-PC 219 CG13852-PC 1..219 1..219 1169 100 Plus
mats-PB 219 CG13852-PB 1..219 1..219 1169 100 Plus
mats-PA 219 CG13852-PA 1..219 1..219 1169 100 Plus
Mob3-PA 220 CG4946-PA 6..215 3..211 612 52.9 Plus
Mob2-PC 431 CG11711-PC 31..209 36..216 360 40.3 Plus
Mob2-PE 537 CG11711-PE 137..315 36..216 360 40.3 Plus
Mob2-PB 537 CG11711-PB 137..315 36..216 360 40.3 Plus
Mob2-PD 566 CG11711-PD 166..344 36..216 360 40.3 Plus
Mob2-PA 728 CG11711-PA 328..506 36..216 360 40.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22385-PA 219 GI22385-PA 1..219 1..219 1159 97.3 Plus
Dmoj\GI18135-PA 221 GI18135-PA 7..221 1..218 619 51.6 Plus
Dmoj\GI11596-PA 1030 GI11596-PA 138..319 36..219 365 39.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24215-PA 219 GL24215-PA 1..219 1..219 1169 98.2 Plus
Dper\GL18994-PA 220 GL18994-PA 11..216 8..212 613 51 Plus
Dper\GL22820-PA 395 GL22820-PA 17..125 105..216 213 40.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26541-PA 219 GA26541-PA 1..219 1..219 1169 98.2 Plus
Dpse\GA11155-PA 562 GA11155-PA 127..305 36..216 371 40.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26432-PA 219 GM26432-PA 1..219 1..219 1187 100 Plus
Dsec\GM18081-PA 220 GM18081-PA 6..215 3..211 625 52.9 Plus
Dsec\GM24744-PA 564 GM24744-PA 130..308 36..216 370 40.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20949-PA 219 GD20949-PA 1..219 1..219 1187 100 Plus
Dsim\GD23671-PA 220 GD23671-PA 6..216 3..212 623 52.6 Plus
Dsim\GD12801-PA 540 GD12801-PA 137..315 36..216 371 40.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24418-PA 221 GJ24418-PA 3..221 1..219 1166 97.7 Plus
Dvir\GJ14867-PA 220 GJ14867-PA 7..220 1..216 610 50.7 Plus
Dvir\GJ11275-PA 560 GJ11275-PA 137..318 36..219 371 39.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13074-PA 221 GK13074-PA 3..221 1..219 1133 95 Plus
Dwil\GK17021-PA 597 GK17021-PA 148..326 36..216 366 40.3 Plus
Dwil\GK18525-PA 106 GK18525-PA 13..104 10..100 290 55.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10299-PA 219 GE10299-PA 1..219 1..219 1187 100 Plus
Dyak\GE18913-PA 220 GE18913-PA 6..215 3..211 626 52.9 Plus
Dyak\GE20209-PA 539 GE20209-PA 129..307 36..216 371 40.3 Plus

LD47553.hyp Sequence

Translation from 418 to 1077

> LD47553.hyp
MDFLFGSRSSKTFKPKKNIPEGTHQYDLMKHAAATLGSGNLRNAVALPDG
EDLNEWVAVNTVDFFNQINMLYGTITEFCTEETCGIMSAGPKYEYHWADG
LTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFHSSAKT
ILKRLFRVYAHIYHQHFTEVVTLGEEAHLNTSFKHFIFFVQEFNLIERRE
LAPLQELIDKLTAKDERQI*

LD47553.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
mats-PC 219 CG13852-PC 1..219 1..219 1169 100 Plus
mats-PB 219 CG13852-PB 1..219 1..219 1169 100 Plus
mats-PA 219 CG13852-PA 1..219 1..219 1169 100 Plus
Mob3-PA 220 CG4946-PA 6..215 3..211 612 52.9 Plus
Mob2-PC 431 CG11711-PC 31..209 36..216 360 40.3 Plus