Clone LD47579 Report

Search the DGRC for LD47579

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:475
Well:79
Vector:pOT2
Associated Gene/Transcriptstg-RA
Protein status:LD47579.pep: gold
Preliminary Size:2648
Sequenced Size:2745

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1395 2001-01-01 Release 2 assignment
CG1395 2001-11-29 Blastp of sequenced clone
CG1395 2003-01-01 Sim4 clustering to Release 3
stg 2008-04-29 Release 5.5 accounting
stg 2008-08-15 Release 5.9 accounting
stg 2008-12-18 5.12 accounting

Clone Sequence Records

LD47579.complete Sequence

2745 bp (2745 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069704

> LD47579.complete
ACCACCAAGGCGCCAGATTCTCCTCGTTTCTCGGGACATTGGTATTCGGT
GCGGGATTTTGCGATAGGGGAAGTGCAGGGGAAAGGATTCTACCTGTTGC
CGGCACTCTTGTGCTCCACATGAGCAGAGATTTCCAAAACTGAGTCCATA
TGATCCTGATTCTCCCATTTTCCCAGTTTTCCTTTTCGCATCGCACATGG
CTCTGGCCCCGTCCCCGTTATGTGTGTTGGTGTCGCTCGTTGCCCGTCTC
CCTTCCTCTTCTATTGGCACTTCTGGGAAGGATAGGAAGGAAAGGATAGG
ATGGGAAGGCAAAGGAAAGGAGCTGAGAACTAAGAGCTAAAGAGCGAAGC
AGAGAGAACAAAAAACGCGCGCCATCTCGCTCGCGCCCATTAGCTCATCA
GCTGATCGTGATCGGCCGGGGTGCGGTTATAAAAACCAGCTGCTCGGCAT
ATTCAGCACATTCGTTCTCAGTTCGTCGTCGAGTCAACAGCTCTTCTTGT
TCAGCCTTTCGGTTCCTCGTTCGGTGAATTGAGATTGTGCGGTTCAAATT
ATTGAAGAAAAAGAAAAACCTCGCACAACCACACTCCGAAATACAAAACA
AAAAATCATGCTCAAACGGACACATTAACAAAAAAAAAAAACAAAAAAAC
CTAAATTAACTAAAATGCAATACTAGCCAAAAACCAAGGACTACCATCTC
AAATTCTAAAAACAAACTGTAAATGAGTGCAGAGTGACCAAGAACAAATT
GTGTTTTAGCAATTTCTTCGGCTTCAGACTCGCCAGCGAAATCAAACATC
TTCGGCTCTTCGAAGCAACCAACGCAACACATAACACAACAAAACCAACA
AAATGCTGTGGGAAACTATTGTGGAGGAAAACAACTGCAGCATGGATTGC
AATATCAGTAATAACACCAGCAGTTCGAGTAGCATCAACAAAATGAGTGG
ATCTCGTCGTGCTCGCCGTTCCCTGGAACTGATGAGCATGGACCAGGAGG
AGCTGTCGTTCTACGACGACGACGTTGTGCCCCAGGATCAGCAGCGATCG
GCCAGTCCGGAGCTGATGGGTCTGCTCTCGCCGGAGGGCTCGCCCCAGCG
CTTCCAGATCGTCCGCCAGCCGAAAATTCTGCCAGCTATGGGAGTATCAA
GTGATCACACGCCGGCGCGCAGCTTCCGCATCTTCAACAGCCTGTCCTCC
ACATGCTCCATGGAGTCCTCCATGGACGATGAGTACATGGAGCTCTTCGA
GATGGAGTCGCAGAGCCAACAGACCGCCCTGGGCTTCCCCAGTGGCCTAA
ACTCGCTGATCAGCGGCCAGATCAAGGAGCAGCCTGCTGCCAAATCGCCA
GCGGGTCTGTCCATGCGCCGCCCTTCGGTCAGAAGGTGCCTCAGCATGAC
GGAGAGCAACACCAACAGCACCACCACCCCACCACCAAAGACCCCAGAGA
CTGCCCGGGATTGCTTCAAGCGCCCGGAACCGCCAGCATCGGCCAACTGC
TCGCCCATCCAGAGCAAACGCCATCGCTGCGCCGCCGTTGAGAAGGAGAA
CTGCCCCGCACCCAGCCCACTCAGCCAGGTCACGATTAGCCACCCCCCTC
CACTGAGGAAGTGCATGTCCCTGAACGACGCCGAGATCATGTCCGCCCTG
GCCCGCTCCGAGAACCGCAACGAGCCCGAGCTAATCGGCGACTTCAGCAA
AGCCTATGCCCTGCCCCTGATGGAGGGTCGTCATCGGGATCTGAAGAGCA
TCTCCAGCGAAACAGTGGCTCGCCTGCTTAAGGGCGAGTTCAGCGATAAG
GTGGCCAGCTACCGCATCATCGACTGCCGCTACCCCTACGAATTCGAGGG
CGGCCACATCGAGGGAGCCAAGAACCTGTACACCACCGAGCAGATCCTCG
ATGAGTTCCTCACCGTCCAACAGACTGAGCTGCAGCAGCAGCAGAACGCC
GAATCGGGACACAAGCGCAACATCATTATCTTCCACTGCGAATTCTCCTC
GGAGCGTGGACCGAAAATGTCCCGCTTCCTGCGTAATCTGGATCGCGAGA
GGAATACCAACGCCTATCCGGCGTTGCACTATCCCGAGATCTATCTGCTG
CACAACGGCTACAAGGAGTTCTTCGAGTCGCACGTTGAGCTGTGCGAACC
ACATGCCTACCGCACCATGCTGGATCCCGCCTACAACGAGGCCTATCGCC
ACTTTCGCGCCAAGTCCAAGTCCTGGAACGGCGATGGCCTGGGCGGTGCC
ACCGGGCGGCTAAAGAAGTCGCGCTCGCGACTGATGCTGTAGGTTGTGGG
ATGATCGTGCAGTTCGTTATCTAAGTTTGGGTGTTATCGTATTGTATATA
TAGACGTATAGGGGTATTTATTTCATGCTGCTTTTAAGTTGATTTTTGTT
GATTTTCATTTGTTAATCCGTAGACTAAGTTTCTCGCACACGACGCAGAC
ACACACCCGACACTCGCATTCATGCAAAACAGACAATTTCATTTGGAATT
TAACGCTTTTGTTTAGTTATTATTGTTTTTATGGTTTCGGCTTTAGTTCA
ATTATTTAAGCACTCTAGTTCAAATTTTAAAGATAACCAACGAACAAGCA
AACGAAAAATGTGCATTATAATCTAAAAACGTGAGGAACCATGTCATTTA
AATTTAAGAGGCCGATCCCGAAATCAGACCCCTTAATCATTTGTAGATGA
TAAGCAGAACAAAAAATGGCTAAAAACAAAAAAAAAAAAAAAAAA

LD47579.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
stg.a 3238 stg.a 7..2751 1..2745 13710 99.9 Plus
stg-RA 3238 stg-RA 7..2751 1..2745 13710 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25074926..25076747 2727..906 8960 99.5 Minus
chr3R 27901430 chr3R 25077649..25078551 908..1 4355 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29252125..29253964 2745..906 9185 99.9 Minus
3R 32079331 3R 29254873..29255780 908..1 4540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28992956..28994795 2745..906 9185 99.9 Minus
3R 31820162 3R 28995704..28996611 908..1 4540 100 Minus
Blast to na_te.dros performed 2019-03-15 13:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 7668..7787 599..718 122 59 Plus

LD47579.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:36 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25074926..25076744 909..2727 99 <- Minus
chr3R 25077649..25078551 1..908 93   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:44 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RA 1..1440 853..2292 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:25:06 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RA 1..1440 853..2292 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:15:59 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RA 1..1440 853..2292 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:52:10 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RA 1..1440 853..2292 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:44:03 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RA 1..1440 853..2292 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:00:51 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RA 1..2727 1..2727 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:25:06 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RA 1..2727 1..2727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:15:59 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RA 21..2747 1..2727 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:52:10 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RA 1..2727 1..2727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:44:03 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
stg-RB 21..2747 1..2727 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:36 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29252143..29253961 909..2727 100 <- Minus
3R 29254873..29255780 1..908 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:36 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29252143..29253961 909..2727 100 <- Minus
3R 29254873..29255780 1..908 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:36 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29252143..29253961 909..2727 100 <- Minus
3R 29254873..29255780 1..908 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:15:59 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25077865..25079683 909..2727 100 <- Minus
arm_3R 25080595..25081502 1..908 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:23 Download gff for LD47579.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28992974..28994792 909..2727 100 <- Minus
3R 28995704..28996611 1..908 100   Minus

LD47579.pep Sequence

Translation from 852 to 2291

> LD47579.pep
MLWETIVEENNCSMDCNISNNTSSSSSINKMSGSRRARRSLELMSMDQEE
LSFYDDDVVPQDQQRSASPELMGLLSPEGSPQRFQIVRQPKILPAMGVSS
DHTPARSFRIFNSLSSTCSMESSMDDEYMELFEMESQSQQTALGFPSGLN
SLISGQIKEQPAAKSPAGLSMRRPSVRRCLSMTESNTNSTTTPPPKTPET
ARDCFKRPEPPASANCSPIQSKRHRCAAVEKENCPAPSPLSQVTISHPPP
LRKCMSLNDAEIMSALARSENRNEPELIGDFSKAYALPLMEGRHRDLKSI
SSETVARLLKGEFSDKVASYRIIDCRYPYEFEGGHIEGAKNLYTTEQILD
EFLTVQQTELQQQQNAESGHKRNIIIFHCEFSSERGPKMSRFLRNLDRER
NTNAYPALHYPEIYLLHNGYKEFFESHVELCEPHAYRTMLDPAYNEAYRH
FRAKSKSWNGDGLGGATGRLKKSRSRLML*

LD47579.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22894-PA 482 GF22894-PA 1..482 1..479 2027 82.6 Plus
Dana\GF14942-PA 441 GF14942-PA 120..407 122..458 685 46.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12021-PA 478 GG12021-PA 1..478 1..479 2512 97.9 Plus
Dere\GG24180-PA 425 GG24180-PA 22..422 48..478 682 40.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14002-PA 529 GH14002-PA 1..529 1..479 1593 66.5 Plus
Dgri\GH13414-PA 374 GH13414-PA 105..371 210..478 639 48.9 Plus
Dgri\GH24474-PA 284 GH24474-PA 67..267 273..476 449 46.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
stg-PB 479 CG1395-PB 1..479 1..479 2504 100 Plus
stg-PA 479 CG1395-PA 1..479 1..479 2504 100 Plus
twe-PD 426 CG4965-PD 101..423 107..478 711 45.1 Plus
twe-PC 426 CG4965-PC 101..423 107..478 711 45.1 Plus
twe-PB 426 CG4965-PB 101..423 107..478 711 45.1 Plus
twe-PA 426 CG4965-PA 101..423 107..478 711 45.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22346-PA 508 GI22346-PA 1..508 1..479 1586 70.3 Plus
Dmoj\GI17651-PA 416 GI17651-PA 100..412 124..478 694 44.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25772-PA 430 GL25772-PA 79..396 95..458 703 43.7 Plus
Dper\GL13601-PA 238 GL13601-PA 1..232 1..220 693 68.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12648-PA 497 GA12648-PA 1..497 1..479 1893 76.6 Plus
Dpse\GA18558-PA 430 GA18558-PA 79..396 95..458 702 43.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12247-PA 472 GM12247-PA 1..472 1..479 2485 97.1 Plus
Dsec\GM17918-PA 426 GM17918-PA 91..423 105..478 683 43 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17842-PA 479 GD17842-PA 1..479 1..479 2552 99.2 Plus
Dsim\GD21927-PA 426 GD21927-PA 22..423 48..478 682 40 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18216-PA 435 GJ18216-PA 91..392 107..458 730 47.3 Plus
Dvir\GJ14225-PA 372 GJ14225-PA 1..264 1..224 705 61.2 Plus
Dvir\GJ14225-PA 372 GJ14225-PA 274..372 382..479 418 82.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11032-PA 503 GK11032-PA 1..503 1..479 1848 76.7 Plus
Dwil\GK18093-PA 426 GK18093-PA 10..423 47..478 722 40.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10458-PA 478 GE10458-PA 1..478 1..479 2502 97.3 Plus
Dyak\GE19373-PA 425 GE19373-PA 118..422 122..478 686 44 Plus

LD47579.hyp Sequence

Translation from 852 to 2291

> LD47579.hyp
MLWETIVEENNCSMDCNISNNTSSSSSINKMSGSRRARRSLELMSMDQEE
LSFYDDDVVPQDQQRSASPELMGLLSPEGSPQRFQIVRQPKILPAMGVSS
DHTPARSFRIFNSLSSTCSMESSMDDEYMELFEMESQSQQTALGFPSGLN
SLISGQIKEQPAAKSPAGLSMRRPSVRRCLSMTESNTNSTTTPPPKTPET
ARDCFKRPEPPASANCSPIQSKRHRCAAVEKENCPAPSPLSQVTISHPPP
LRKCMSLNDAEIMSALARSENRNEPELIGDFSKAYALPLMEGRHRDLKSI
SSETVARLLKGEFSDKVASYRIIDCRYPYEFEGGHIEGAKNLYTTEQILD
EFLTVQQTELQQQQNAESGHKRNIIIFHCEFSSERGPKMSRFLRNLDRER
NTNAYPALHYPEIYLLHNGYKEFFESHVELCEPHAYRTMLDPAYNEAYRH
FRAKSKSWNGDGLGGATGRLKKSRSRLML*

LD47579.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
stg-PB 479 CG1395-PB 1..479 1..479 2504 100 Plus
stg-PA 479 CG1395-PA 1..479 1..479 2504 100 Plus
twe-PD 426 CG4965-PD 101..423 107..478 711 45.1 Plus
twe-PC 426 CG4965-PC 101..423 107..478 711 45.1 Plus
twe-PB 426 CG4965-PB 101..423 107..478 711 45.1 Plus