BDGP Sequence Production Resources |
Search the DGRC for LD47579
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 475 |
Well: | 79 |
Vector: | pOT2 |
Associated Gene/Transcript | stg-RA |
Protein status: | LD47579.pep: gold |
Preliminary Size: | 2648 |
Sequenced Size: | 2745 |
Gene | Date | Evidence |
---|---|---|
CG1395 | 2001-01-01 | Release 2 assignment |
CG1395 | 2001-11-29 | Blastp of sequenced clone |
CG1395 | 2003-01-01 | Sim4 clustering to Release 3 |
stg | 2008-04-29 | Release 5.5 accounting |
stg | 2008-08-15 | Release 5.9 accounting |
stg | 2008-12-18 | 5.12 accounting |
2745 bp (2745 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069704
> LD47579.complete ACCACCAAGGCGCCAGATTCTCCTCGTTTCTCGGGACATTGGTATTCGGT GCGGGATTTTGCGATAGGGGAAGTGCAGGGGAAAGGATTCTACCTGTTGC CGGCACTCTTGTGCTCCACATGAGCAGAGATTTCCAAAACTGAGTCCATA TGATCCTGATTCTCCCATTTTCCCAGTTTTCCTTTTCGCATCGCACATGG CTCTGGCCCCGTCCCCGTTATGTGTGTTGGTGTCGCTCGTTGCCCGTCTC CCTTCCTCTTCTATTGGCACTTCTGGGAAGGATAGGAAGGAAAGGATAGG ATGGGAAGGCAAAGGAAAGGAGCTGAGAACTAAGAGCTAAAGAGCGAAGC AGAGAGAACAAAAAACGCGCGCCATCTCGCTCGCGCCCATTAGCTCATCA GCTGATCGTGATCGGCCGGGGTGCGGTTATAAAAACCAGCTGCTCGGCAT ATTCAGCACATTCGTTCTCAGTTCGTCGTCGAGTCAACAGCTCTTCTTGT TCAGCCTTTCGGTTCCTCGTTCGGTGAATTGAGATTGTGCGGTTCAAATT ATTGAAGAAAAAGAAAAACCTCGCACAACCACACTCCGAAATACAAAACA AAAAATCATGCTCAAACGGACACATTAACAAAAAAAAAAAACAAAAAAAC CTAAATTAACTAAAATGCAATACTAGCCAAAAACCAAGGACTACCATCTC AAATTCTAAAAACAAACTGTAAATGAGTGCAGAGTGACCAAGAACAAATT GTGTTTTAGCAATTTCTTCGGCTTCAGACTCGCCAGCGAAATCAAACATC TTCGGCTCTTCGAAGCAACCAACGCAACACATAACACAACAAAACCAACA AAATGCTGTGGGAAACTATTGTGGAGGAAAACAACTGCAGCATGGATTGC AATATCAGTAATAACACCAGCAGTTCGAGTAGCATCAACAAAATGAGTGG ATCTCGTCGTGCTCGCCGTTCCCTGGAACTGATGAGCATGGACCAGGAGG AGCTGTCGTTCTACGACGACGACGTTGTGCCCCAGGATCAGCAGCGATCG GCCAGTCCGGAGCTGATGGGTCTGCTCTCGCCGGAGGGCTCGCCCCAGCG CTTCCAGATCGTCCGCCAGCCGAAAATTCTGCCAGCTATGGGAGTATCAA GTGATCACACGCCGGCGCGCAGCTTCCGCATCTTCAACAGCCTGTCCTCC ACATGCTCCATGGAGTCCTCCATGGACGATGAGTACATGGAGCTCTTCGA GATGGAGTCGCAGAGCCAACAGACCGCCCTGGGCTTCCCCAGTGGCCTAA ACTCGCTGATCAGCGGCCAGATCAAGGAGCAGCCTGCTGCCAAATCGCCA GCGGGTCTGTCCATGCGCCGCCCTTCGGTCAGAAGGTGCCTCAGCATGAC GGAGAGCAACACCAACAGCACCACCACCCCACCACCAAAGACCCCAGAGA CTGCCCGGGATTGCTTCAAGCGCCCGGAACCGCCAGCATCGGCCAACTGC TCGCCCATCCAGAGCAAACGCCATCGCTGCGCCGCCGTTGAGAAGGAGAA CTGCCCCGCACCCAGCCCACTCAGCCAGGTCACGATTAGCCACCCCCCTC CACTGAGGAAGTGCATGTCCCTGAACGACGCCGAGATCATGTCCGCCCTG GCCCGCTCCGAGAACCGCAACGAGCCCGAGCTAATCGGCGACTTCAGCAA AGCCTATGCCCTGCCCCTGATGGAGGGTCGTCATCGGGATCTGAAGAGCA TCTCCAGCGAAACAGTGGCTCGCCTGCTTAAGGGCGAGTTCAGCGATAAG GTGGCCAGCTACCGCATCATCGACTGCCGCTACCCCTACGAATTCGAGGG CGGCCACATCGAGGGAGCCAAGAACCTGTACACCACCGAGCAGATCCTCG ATGAGTTCCTCACCGTCCAACAGACTGAGCTGCAGCAGCAGCAGAACGCC GAATCGGGACACAAGCGCAACATCATTATCTTCCACTGCGAATTCTCCTC GGAGCGTGGACCGAAAATGTCCCGCTTCCTGCGTAATCTGGATCGCGAGA GGAATACCAACGCCTATCCGGCGTTGCACTATCCCGAGATCTATCTGCTG CACAACGGCTACAAGGAGTTCTTCGAGTCGCACGTTGAGCTGTGCGAACC ACATGCCTACCGCACCATGCTGGATCCCGCCTACAACGAGGCCTATCGCC ACTTTCGCGCCAAGTCCAAGTCCTGGAACGGCGATGGCCTGGGCGGTGCC ACCGGGCGGCTAAAGAAGTCGCGCTCGCGACTGATGCTGTAGGTTGTGGG ATGATCGTGCAGTTCGTTATCTAAGTTTGGGTGTTATCGTATTGTATATA TAGACGTATAGGGGTATTTATTTCATGCTGCTTTTAAGTTGATTTTTGTT GATTTTCATTTGTTAATCCGTAGACTAAGTTTCTCGCACACGACGCAGAC ACACACCCGACACTCGCATTCATGCAAAACAGACAATTTCATTTGGAATT TAACGCTTTTGTTTAGTTATTATTGTTTTTATGGTTTCGGCTTTAGTTCA ATTATTTAAGCACTCTAGTTCAAATTTTAAAGATAACCAACGAACAAGCA AACGAAAAATGTGCATTATAATCTAAAAACGTGAGGAACCATGTCATTTA AATTTAAGAGGCCGATCCCGAAATCAGACCCCTTAATCATTTGTAGATGA TAAGCAGAACAAAAAATGGCTAAAAACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TAHRE | 10463 | TAHRE OSV 10463bp | 7668..7787 | 599..718 | 122 | 59 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25074926..25076744 | 909..2727 | 99 | <- | Minus |
chr3R | 25077649..25078551 | 1..908 | 93 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RA | 1..1440 | 853..2292 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RA | 1..1440 | 853..2292 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RA | 1..1440 | 853..2292 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RA | 1..1440 | 853..2292 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RA | 1..1440 | 853..2292 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RA | 1..2727 | 1..2727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RA | 1..2727 | 1..2727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RA | 21..2747 | 1..2727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RA | 1..2727 | 1..2727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stg-RB | 21..2747 | 1..2727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29252143..29253961 | 909..2727 | 100 | <- | Minus |
3R | 29254873..29255780 | 1..908 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29252143..29253961 | 909..2727 | 100 | <- | Minus |
3R | 29254873..29255780 | 1..908 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29252143..29253961 | 909..2727 | 100 | <- | Minus |
3R | 29254873..29255780 | 1..908 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25077865..25079683 | 909..2727 | 100 | <- | Minus |
arm_3R | 25080595..25081502 | 1..908 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 28992974..28994792 | 909..2727 | 100 | <- | Minus |
3R | 28995704..28996611 | 1..908 | 100 | Minus |
Translation from 852 to 2291
> LD47579.pep MLWETIVEENNCSMDCNISNNTSSSSSINKMSGSRRARRSLELMSMDQEE LSFYDDDVVPQDQQRSASPELMGLLSPEGSPQRFQIVRQPKILPAMGVSS DHTPARSFRIFNSLSSTCSMESSMDDEYMELFEMESQSQQTALGFPSGLN SLISGQIKEQPAAKSPAGLSMRRPSVRRCLSMTESNTNSTTTPPPKTPET ARDCFKRPEPPASANCSPIQSKRHRCAAVEKENCPAPSPLSQVTISHPPP LRKCMSLNDAEIMSALARSENRNEPELIGDFSKAYALPLMEGRHRDLKSI SSETVARLLKGEFSDKVASYRIIDCRYPYEFEGGHIEGAKNLYTTEQILD EFLTVQQTELQQQQNAESGHKRNIIIFHCEFSSERGPKMSRFLRNLDRER NTNAYPALHYPEIYLLHNGYKEFFESHVELCEPHAYRTMLDPAYNEAYRH FRAKSKSWNGDGLGGATGRLKKSRSRLML*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22894-PA | 482 | GF22894-PA | 1..482 | 1..479 | 2027 | 82.6 | Plus |
Dana\GF14942-PA | 441 | GF14942-PA | 120..407 | 122..458 | 685 | 46.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12021-PA | 478 | GG12021-PA | 1..478 | 1..479 | 2512 | 97.9 | Plus |
Dere\GG24180-PA | 425 | GG24180-PA | 22..422 | 48..478 | 682 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14002-PA | 529 | GH14002-PA | 1..529 | 1..479 | 1593 | 66.5 | Plus |
Dgri\GH13414-PA | 374 | GH13414-PA | 105..371 | 210..478 | 639 | 48.9 | Plus |
Dgri\GH24474-PA | 284 | GH24474-PA | 67..267 | 273..476 | 449 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stg-PB | 479 | CG1395-PB | 1..479 | 1..479 | 2504 | 100 | Plus |
stg-PA | 479 | CG1395-PA | 1..479 | 1..479 | 2504 | 100 | Plus |
twe-PD | 426 | CG4965-PD | 101..423 | 107..478 | 711 | 45.1 | Plus |
twe-PC | 426 | CG4965-PC | 101..423 | 107..478 | 711 | 45.1 | Plus |
twe-PB | 426 | CG4965-PB | 101..423 | 107..478 | 711 | 45.1 | Plus |
twe-PA | 426 | CG4965-PA | 101..423 | 107..478 | 711 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22346-PA | 508 | GI22346-PA | 1..508 | 1..479 | 1586 | 70.3 | Plus |
Dmoj\GI17651-PA | 416 | GI17651-PA | 100..412 | 124..478 | 694 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25772-PA | 430 | GL25772-PA | 79..396 | 95..458 | 703 | 43.7 | Plus |
Dper\GL13601-PA | 238 | GL13601-PA | 1..232 | 1..220 | 693 | 68.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12648-PA | 497 | GA12648-PA | 1..497 | 1..479 | 1893 | 76.6 | Plus |
Dpse\GA18558-PA | 430 | GA18558-PA | 79..396 | 95..458 | 702 | 43.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12247-PA | 472 | GM12247-PA | 1..472 | 1..479 | 2485 | 97.1 | Plus |
Dsec\GM17918-PA | 426 | GM17918-PA | 91..423 | 105..478 | 683 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17842-PA | 479 | GD17842-PA | 1..479 | 1..479 | 2552 | 99.2 | Plus |
Dsim\GD21927-PA | 426 | GD21927-PA | 22..423 | 48..478 | 682 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18216-PA | 435 | GJ18216-PA | 91..392 | 107..458 | 730 | 47.3 | Plus |
Dvir\GJ14225-PA | 372 | GJ14225-PA | 1..264 | 1..224 | 705 | 61.2 | Plus |
Dvir\GJ14225-PA | 372 | GJ14225-PA | 274..372 | 382..479 | 418 | 82.8 | Plus |
Translation from 852 to 2291
> LD47579.hyp MLWETIVEENNCSMDCNISNNTSSSSSINKMSGSRRARRSLELMSMDQEE LSFYDDDVVPQDQQRSASPELMGLLSPEGSPQRFQIVRQPKILPAMGVSS DHTPARSFRIFNSLSSTCSMESSMDDEYMELFEMESQSQQTALGFPSGLN SLISGQIKEQPAAKSPAGLSMRRPSVRRCLSMTESNTNSTTTPPPKTPET ARDCFKRPEPPASANCSPIQSKRHRCAAVEKENCPAPSPLSQVTISHPPP LRKCMSLNDAEIMSALARSENRNEPELIGDFSKAYALPLMEGRHRDLKSI SSETVARLLKGEFSDKVASYRIIDCRYPYEFEGGHIEGAKNLYTTEQILD EFLTVQQTELQQQQNAESGHKRNIIIFHCEFSSERGPKMSRFLRNLDRER NTNAYPALHYPEIYLLHNGYKEFFESHVELCEPHAYRTMLDPAYNEAYRH FRAKSKSWNGDGLGGATGRLKKSRSRLML*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stg-PB | 479 | CG1395-PB | 1..479 | 1..479 | 2504 | 100 | Plus |
stg-PA | 479 | CG1395-PA | 1..479 | 1..479 | 2504 | 100 | Plus |
twe-PD | 426 | CG4965-PD | 101..423 | 107..478 | 711 | 45.1 | Plus |
twe-PC | 426 | CG4965-PC | 101..423 | 107..478 | 711 | 45.1 | Plus |
twe-PB | 426 | CG4965-PB | 101..423 | 107..478 | 711 | 45.1 | Plus |