Clone LD47601 Report

Search the DGRC for LD47601

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:476
Well:1
Vector:pOT2
Associated Gene/Transcriptcorto-RA
Protein status:LD47601.pep: gold
Sequenced Size:3009

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2530 2003-01-01 Sim4 clustering to Release 3
corto 2008-04-29 Release 5.5 accounting
corto 2008-08-15 Release 5.9 accounting
corto 2008-12-18 5.12 accounting

Clone Sequence Records

LD47601.complete Sequence

3009 bp (3009 high quality bases) assembled on 2005-07-07

GenBank Submission: BT023771

> LD47601.complete
ATAAAGCGTGGTCTGTGGCACGTAATTAACGAAGAAGAGAGTTAAGAAGA
TTCAACGTCGCGTCGAAGGTGAACACGCAGTTAAAACCCAAAAACAAACG
CAACGCAGCCAATTGTGATACGAAAAATAAGTAAATCGGCAGACAATCAA
CAAAAACAATAAAAGCAAAGCCTACACACAGGCGTAGGCGTCTAGCCAAC
AGCTGTTTTTCGTGCGCGCTCCGTATTCAGCATACTCGCTGCGCTTACAA
ACGTCGGCAGAGACCGCGGCAGAGAAGCAAGCGGCGGCAGCAAAACTACA
AAGCAGAAACTACAATTCAGATCGCGTTTTTCTTCGGAGTGGATGAGACG
TTCGTTCGGCAGTTCTATTGCGCATAGAACTAACAAGTTACCTACTCCGC
GAACTCACCCCCGCGAGAAAAGAACAGAACAGAGCATAACCGAATGGAAA
GAAGACAAGGAGTAGCTAAAAAGCAACGGTTAAGTTAGCCAGCAAAAACG
GGCAAAAAGACTGAAAACACACGTGGATTGTTCACTCACCCCGACACGCG
CACCCACTCGCACTCACACTCACCCAGCAGCTCCAACTGTTCGCTGCATT
TATGTAAAACCAAACAAAGACTGACTAAAACGCTAATAAATATACAATAA
ACGTAACGAAACAAAGTTAAACACGCGAACAGCAGCTAATATTATACGGG
TTAAAGCGAATTCCAAAGCAAAGCAAACACACATATGGATTAAGGTTCCT
CCTATCTCAAAACACAAAAACAAAAGCAACAACCAACTCACGGATTACCT
GCAGCGGCAAATTTACCGTTAGCCGCTCTTTTTGGATTACCAGTGCCAAT
AAAACCACAAAAGTGAATTTTTTCGAAAGTGAAGAAAGCGAAAAACATCC
GCAAAATGATAAAAATCTAAATCTAAGTAAATAAGCAAACCAAAAGCGAA
TTCTGTGTTACCGAAACGAGAGCAAAAGCTAAAAGATCCCCTGAATACAG
CAATGACGATGGCCGCCTGTTATGCCAACTACGACATGTCGTCCCTGTCG
CACGGCATGTCGGCCCTGTCCGCCCTGCAGCAGCAACAGCAGCAGCAACA
GCAGCAGCACAGCCAGACGCAGCAGCAGCATCATCACCAGCAGCAGCAGC
AACACATGTACCACGCCGCCGTGGCTGCCCACCAGCAGCAGTTGCTGCAA
CAGCAGCAGCAGCAGCAACACCACCGCCATCACCACCAGCCCGCCAACAC
CAGCAGCAGCAGCAACTCGCGCCACAGCCATGCGGCGGCGACCCAAACGC
AGGTCGCCGCCGCGGTTGCCAACAGCAGACAACAACAACAACAGCAACAA
CAGCAGCAACAGCAGCAGCAGCAGCAGCAGACTGCCAGCAGCAACAGCAA
CGCAGCCCCCGCTCCATCGCCGCAGAAGGACTACAGCATCCCGCTGCACG
TGGACTGCAGCGTGGAGTACGAGCTGCCCAACCAGCCCAAGCCGCCGGCG
GGCCAGAGAGTGGAGCCCCTGCTGATGATCCACCCGTGCTACTTCCGCAA
GATGGAGTCGCAGCGGCGCAGCCCGTTCGTGAACAACATGCATGCGACCG
CGCGGGCGGTGAGCAGCAGCTCGCTGAGCAGCGGAGCGGCCCTGGGCGGA
GGCGGAAGCGGTGCGGCGGTGGCCACGGCGCCCAGCAGTAGTGCCGCGCG
GCGTGGAGCCCGGGCGGCTACGAGCGCCCAGCAGCAGCAACAACAGCAGC
AACGCTACCAACAGCAACAGCAGCAACTGCGGCAACAGCACCAGCAGATG
TCGCAGATGTCGCAGCAGGCCCACTATCCCCAGCAACAGTCTAGTCTGGT
CCGCCAGCACCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACGTGCCA
GCAGCAACCAAAGCCAACGCCAAAGCCAAAGTCAGAGCCAGAGCCAGAGC
CATGCAGCCAACTCAGCGGCGGCAGCTGCGGCCCAGGCCTCGATAGCCGC
CGCAGCCGCCGGCCAGTGGGATCAACTGGCTGCGCTGGCCGCCCGCACCG
CCCTCACGCCGCACCACATGCTGCATCCCCACAGCCACTACGCGGCCAAG
GGTAGTGGCGGCGGAGCAGGGGGCGGGAAGCGGGACGCCATGATCTCCGG
CAGCTACGGACAGACGGCGGTCGCCTCGGGGAAGCTGCAACAGTCGCAGG
TGCAGCAGCAGCAGCCACAGCAGCAACAGCAACACTGCCTGCCTCCGCCG
CCGTGGGACGCGACGTCCATGCTGATGGACCGCTCGCCGATGGCCACAGT
TCCTAGCAATTATCAGGCCGGCCCTGACACCAATCCCATGCGCCTCTACT
CGGCCACGCCCACCGCCGGAGCGGCCTCGGGCGGGTCGGCGTCGGTGGGC
GGAGGCGGGGCGGTGAGTGGTGCGGGGGCGACGGGAGCAGTGAACACGGC
CACCGACAAGTTGAGCGGAAAGTACCGCCAGTACTTGCGGTCCCAGCGGA
TGCACCCGTACGCGGCGGCCGCCTCGCTCAACTTGGCAGCCGCCGCCGCT
GCCGCCGGCCAGACCTCGTTTGTGCCGTTCAGTTCGGCGGCCACGGCGGT
GGCGGCCACGCCCACATTCCAGCACCTGCCGCAGATCTCCTGCTACAACG
TGTGATGCAGCACCAGCAGCAACCAGGACAACGGCAACATCAGCAGCAGC
AACAGCAACTTGCAACACATGAGACAGGCGCCTACCAAGTACGCGTCGAT
GAAATAGCCGCCTCAAGGAATAATTAATAGATCCTCCCCTAAAACAGTAC
TATATATACACACCCATCAAAGCTTTTAGAATCAAAAGTAATTAACTCTA
AAAATATTAAGAGATGAAACAAAATTCTGTCTAGCTGCTATGAGAAATTG
TTGTCCGACGGTGAGAAAAGAGGAAATGAGCGATCTTTTTTTCTTTTAGT
AATGGTAGTAATTGATAAACGATACAAAAACAAACAACAACAAAAAAAAA
AAAAAAAAA

LD47601.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
corto-RA 3407 corto-RA 1..3003 1..3003 15015 100 Plus
srp.e 3037 srp.e 308..369 1201..1262 190 87 Plus
srp.d 3278 srp.d 549..610 1201..1262 190 87 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 909706..912696 2991..1 14955 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5084025..5087027 3003..1 15015 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4824856..4827858 3003..1 15015 100 Minus
Blast to na_te.dros performed 2019-03-16 12:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6954 1078..1241 333 70.8 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 7598..7681 1408..1496 118 62.9 Plus

LD47601.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:11:59 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 910969..911290 1407..1728 100 == Minus
chr3R 910041..910900 1797..2656 91 == Minus
chr3R 911381..911542 1155..1316 76 == Minus
chr3R 909706..909987 2710..2991 100 == Minus
chr3R 911621..912696 1..1076 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:45 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RA 1..1653 1003..2655 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:56:31 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RA 1..1653 1003..2655 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:02:03 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RB 1..1653 1003..2655 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:37:15 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RA 1..1653 1003..2655 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:20 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RB 1..1653 1003..2655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:34:40 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RA 1..2650 342..2991 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:56:31 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RA 1..2650 342..2991 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:02:03 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RB 1..2991 1..2991 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:37:16 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RA 1..2650 342..2991 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:20 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
corto-RA 46..3036 1..2991 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:59 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5084037..5087027 1..2991 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:59 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5084037..5087027 1..2991 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:59 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5084037..5087027 1..2991 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:02:03 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 909759..912749 1..2991 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:52 Download gff for LD47601.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4824868..4827858 1..2991 100   Minus

LD47601.pep Sequence

Translation from 1002 to 2654

> LD47601.pep
MTMAACYANYDMSSLSHGMSALSALQQQQQQQQQQHSQTQQQHHHQQQQQ
HMYHAAVAAHQQQLLQQQQQQQHHRHHHQPANTSSSSNSRHSHAAATQTQ
VAAAVANSRQQQQQQQQQQQQQQQQQTASSNSNAAPAPSPQKDYSIPLHV
DCSVEYELPNQPKPPAGQRVEPLLMIHPCYFRKMESQRRSPFVNNMHATA
RAVSSSSLSSGAALGGGGSGAAVATAPSSSAARRGARAATSAQQQQQQQQ
RYQQQQQQLRQQHQQMSQMSQQAHYPQQQSSLVRQHQQQQQQQQQQQRAS
SNQSQRQSQSQSQSQSHAANSAAAAAAQASIAAAAAGQWDQLAALAARTA
LTPHHMLHPHSHYAAKGSGGGAGGGKRDAMISGSYGQTAVASGKLQQSQV
QQQQPQQQQQHCLPPPPWDATSMLMDRSPMATVPSNYQAGPDTNPMRLYS
ATPTAGAASGGSASVGGGGAVSGAGATGAVNTATDKLSGKYRQYLRSQRM
HPYAAAASLNLAAAAAAAGQTSFVPFSSAATAVAATPTFQHLPQISCYNV
*

LD47601.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16075-PA 586 GF16075-PA 1..249 1..237 464 76.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11222-PA 555 GG11222-PA 1..555 1..550 2532 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22809-PA 570 GH22809-PA 1..205 1..200 368 58.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
corto-PD 550 CG2530-PD 1..550 1..550 2817 100 Plus
corto-PC 550 CG2530-PC 1..550 1..550 2817 100 Plus
corto-PB 550 CG2530-PB 1..550 1..550 2817 100 Plus
corto-PE 550 CG2530-PE 1..550 1..550 2817 100 Plus
corto-PA 550 CG2530-PA 1..550 1..550 2817 100 Plus
Smr-PF 3601 CG4013-PF 56..416 67..468 358 32.4 Plus
Smr-PE 3601 CG4013-PE 56..416 67..468 358 32.4 Plus
Smr-PD 3601 CG4013-PD 56..416 67..468 358 32.4 Plus
Smr-PF 3601 CG4013-PF 77..535 21..418 351 28.8 Plus
Smr-PE 3601 CG4013-PE 77..535 21..418 351 28.8 Plus
Smr-PD 3601 CG4013-PD 77..535 21..418 351 28.8 Plus
Smr-PG 3607 CG4013-PG 55..422 59..468 348 30.8 Plus
Smr-PG 3607 CG4013-PG 77..541 21..418 345 28.5 Plus
velo-PC 1833 CG10107-PC 74..596 15..475 341 28.6 Plus
velo-PA 1833 CG10107-PA 74..596 15..475 341 28.6 Plus
Smr-PG 3607 CG4013-PG 56..518 67..518 314 26.7 Plus
sr-PE 906 CG7847-PE 309..708 28..483 310 29.1 Plus
sr-PB 906 CG7847-PB 309..708 28..483 310 29.1 Plus
sr-PA 1186 CG7847-PA 589..988 28..483 310 29.1 Plus
sr-PD 1271 CG7847-PD 589..988 28..483 310 29.1 Plus
CG15740-PB 975 CG15740-PB 171..679 27..537 306 28 Plus
CG10543-PD 1631 CG10543-PD 1185..1564 26..416 300 29.2 Plus
CG10543-PE 1634 CG10543-PE 1188..1567 26..416 300 29.2 Plus
CG10543-PA 1634 CG10543-PA 1188..1567 26..416 300 29.2 Plus
CG10543-PF 1635 CG10543-PF 1189..1568 26..416 300 29.2 Plus
dikar-PG 3080 CG42799-PG 2459..3060 26..529 288 27.3 Plus
dikar-PC 3080 CG42799-PC 2459..3060 26..529 288 27.3 Plus
dikar-PD 3222 CG42799-PD 2601..3202 26..529 288 27.3 Plus
dikar-PF 3261 CG42799-PF 2601..3202 26..529 288 27.3 Plus
Ptip-PA 2294 CG32133-PA 579..1035 25..413 282 26.2 Plus
Ptip-PA 2294 CG32133-PA 1081..1568 27..473 278 26.7 Plus
sr-PE 906 CG7847-PE 332..706 26..338 276 30 Plus
sr-PB 906 CG7847-PB 332..706 26..338 276 30 Plus
sr-PA 1186 CG7847-PA 612..986 26..338 276 30 Plus
sr-PD 1271 CG7847-PD 612..986 26..338 276 30 Plus
dikar-PG 3080 CG42799-PG 2284..2781 24..439 275 26.9 Plus
dikar-PC 3080 CG42799-PC 2284..2781 24..439 275 26.9 Plus
dikar-PD 3222 CG42799-PD 2426..2923 24..439 275 26.9 Plus
dikar-PF 3261 CG42799-PF 2426..2923 24..439 275 26.9 Plus
Ptip-PA 2294 CG32133-PA 792..1177 13..410 275 28.3 Plus
MED25-PA 863 CG12254-PA 228..470 13..302 272 33 Plus
CG43689-PF 1251 CG43689-PF 505..891 5..372 271 28.6 Plus
CG43689-PD 1309 CG43689-PD 563..949 5..372 271 28.6 Plus
CG43689-PC 1332 CG43689-PC 586..972 5..372 271 28.6 Plus
CG43689-PH 1618 CG43689-PH 475..861 5..372 271 28.6 Plus
CG43689-PI 1648 CG43689-PI 505..891 5..372 271 28.6 Plus
CG43689-PG 1648 CG43689-PG 505..891 5..372 271 28.6 Plus
CG43689-PE 1706 CG43689-PE 563..949 5..372 271 28.6 Plus
Smr-PF 3601 CG4013-PF 153..699 12..482 266 26.3 Plus
Smr-PE 3601 CG4013-PE 153..699 12..482 266 26.3 Plus
Smr-PD 3601 CG4013-PD 153..699 12..482 266 26.3 Plus
MED25-PA 863 CG12254-PA 402..851 22..456 266 27.1 Plus
kis-PF 5191 CG3696-PF 296..726 22..415 264 27.7 Plus
kis-PE 5252 CG3696-PE 296..726 22..415 264 27.7 Plus
kis-PA 5322 CG3696-PA 296..726 22..415 264 27.7 Plus
kis-PD 5343 CG3696-PD 296..726 22..415 264 27.7 Plus
kis-PC 5517 CG3696-PC 296..726 22..415 264 27.7 Plus
fs(1)h-PB 2038 CG2252-PB 1493..1849 25..489 261 25.6 Plus
fs(1)h-PG 2046 CG2252-PG 1501..1857 25..489 261 25.6 Plus
ctrip-PA 3140 CG17735-PB 597..1064 31..507 261 27.9 Plus
ctrip-PB 3140 CG42574-PB 597..1064 31..507 261 27.9 Plus
ctrip-PK 3111 CG42574-PK 597..1035 31..507 260 28.1 Plus
ctrip-PF 3139 CG42574-PF 597..1063 31..507 256 28 Plus
Ptip-PA 2294 CG32133-PA 498..862 25..454 248 25.3 Plus
CG43736-PL 1367 CG43736-PL 428..888 41..480 243 26.5 Plus
CG43736-PI 1367 CG43736-PI 428..888 41..480 243 26.5 Plus
Smr-PF 3601 CG4013-PF 90..578 26..411 242 25 Plus
Smr-PE 3601 CG4013-PE 90..578 26..411 242 25 Plus
Smr-PD 3601 CG4013-PD 90..578 26..411 242 25 Plus
Eip74EF-PD 883 CG32180-PD 336..770 8..410 240 25.2 Plus
Eip74EF-PB 883 CG32180-PB 336..770 8..410 240 25.2 Plus
Ptip-PA 2294 CG32133-PA 887..1339 26..416 239 27.1 Plus
Ptip-PA 2294 CG32133-PA 200..523 26..408 237 27.6 Plus
CG3638-PG 1472 CG3638-PG 903..1387 18..520 237 23.1 Plus
Smr-PG 3607 CG4013-PG 200..584 27..411 236 26.7 Plus
SoxN-PB 761 CG18024-PB 505..752 15..327 236 30.2 Plus
Clk-PH 895 CG7391-PH 381..709 14..314 236 29.1 Plus
dikar-PG 3080 CG42799-PG 2100..2480 30..427 234 26.3 Plus
dikar-PC 3080 CG42799-PC 2100..2480 30..427 234 26.3 Plus
dikar-PD 3222 CG42799-PD 2242..2622 30..427 234 26.3 Plus
dikar-PF 3261 CG42799-PF 2242..2622 30..427 234 26.3 Plus
kis-PF 5191 CG3696-PF 546..938 16..392 234 27.4 Plus
kis-PE 5252 CG3696-PE 546..938 16..392 234 27.4 Plus
kis-PA 5322 CG3696-PA 546..938 16..392 234 27.4 Plus
kis-PD 5343 CG3696-PD 546..938 16..392 234 27.4 Plus
kis-PC 5517 CG3696-PC 546..938 16..392 234 27.4 Plus
Ptip-PA 2294 CG32133-PA 701..1138 22..433 232 25.4 Plus
kis-PF 5191 CG3696-PF 294..744 44..453 230 24.8 Plus
kis-PE 5252 CG3696-PE 294..744 44..453 230 24.8 Plus
kis-PA 5322 CG3696-PA 294..744 44..453 230 24.8 Plus
kis-PD 5343 CG3696-PD 294..744 44..453 230 24.8 Plus
kis-PC 5517 CG3696-PC 294..744 44..453 230 24.8 Plus
kis-PF 5191 CG3696-PF 110..496 4..482 229 25.2 Plus
kis-PE 5252 CG3696-PE 110..496 4..482 229 25.2 Plus
kis-PA 5322 CG3696-PA 110..496 4..482 229 25.2 Plus
kis-PD 5343 CG3696-PD 110..496 4..482 229 25.2 Plus
kis-PC 5517 CG3696-PC 110..496 4..482 229 25.2 Plus
fs(1)h-PB 2038 CG2252-PB 1513..1959 26..522 226 24.7 Plus
fs(1)h-PG 2046 CG2252-PG 1521..1967 26..522 226 24.7 Plus
CG43689-PF 1251 CG43689-PF 284..821 17..501 225 23.7 Plus
CG43689-PH 1618 CG43689-PH 254..791 17..501 225 23.7 Plus
CG43689-PI 1648 CG43689-PI 284..821 17..501 225 23.7 Plus
CG43689-PG 1648 CG43689-PG 284..821 17..501 225 23.7 Plus
Ptip-PA 2294 CG32133-PA 209..576 25..315 220 28.3 Plus
fs(1)h-PB 2038 CG2252-PB 1379..1791 49..497 210 24.6 Plus
fs(1)h-PG 2046 CG2252-PG 1387..1799 49..497 210 24.6 Plus
Ptip-PA 2294 CG32133-PA 393..772 27..450 209 26 Plus
CG15740-PB 975 CG15740-PB 268..578 26..334 206 26.6 Plus
velo-PC 1833 CG10107-PC 212..709 10..445 203 25 Plus
velo-PA 1833 CG10107-PA 212..709 10..445 203 25 Plus
kis-PF 5191 CG3696-PF 521..946 53..517 203 26.3 Plus
kis-PE 5252 CG3696-PE 521..946 53..517 203 26.3 Plus
kis-PA 5322 CG3696-PA 521..946 53..517 203 26.3 Plus
kis-PD 5343 CG3696-PD 521..946 53..517 203 26.3 Plus
kis-PC 5517 CG3696-PC 521..946 53..517 203 26.3 Plus
Smr-PG 3607 CG4013-PG 16..306 191..482 192 26.5 Plus
CG43689-PD 1309 CG43689-PD 540..879 198..501 192 26.2 Plus
CG43689-PC 1332 CG43689-PC 563..902 198..501 192 26.2 Plus
CG43689-PE 1706 CG43689-PE 540..879 198..501 192 26.2 Plus
Smr-PF 3601 CG4013-PF 16..300 191..482 191 27.4 Plus
Smr-PE 3601 CG4013-PE 16..300 191..482 191 27.4 Plus
Smr-PD 3601 CG4013-PD 16..300 191..482 191 27.4 Plus
ctrip-PA 3140 CG17735-PB 772..993 19..249 183 29.6 Plus
ctrip-PB 3140 CG42574-PB 772..993 19..249 183 29.6 Plus
ctrip-PF 3139 CG42574-PF 772..992 19..249 181 29.2 Plus
Ptip-PA 2294 CG32133-PA 199..285 243..333 172 45.1 Plus
MED25-PA 863 CG12254-PA 224..422 224..409 170 32.4 Plus
kis-PF 5191 CG3696-PF 45..325 159..410 170 26.9 Plus
kis-PE 5252 CG3696-PE 45..325 159..410 170 26.9 Plus
kis-PA 5322 CG3696-PA 45..325 159..410 170 26.9 Plus
kis-PD 5343 CG3696-PD 45..325 159..410 170 26.9 Plus
kis-PC 5517 CG3696-PC 45..325 159..410 170 26.9 Plus
ctrip-PK 3111 CG42574-PK 772..964 19..249 169 31.1 Plus
SoxN-PB 761 CG18024-PB 458..703 193..501 168 25.7 Plus
Ptip-PA 2294 CG32133-PA 198..376 240..410 167 33.9 Plus
Ptip-PA 2294 CG32133-PA 1186..1527 18..316 165 24.9 Plus
dikar-PG 3080 CG42799-PG 2707..2906 16..242 164 30.7 Plus
dikar-PC 3080 CG42799-PC 2707..2906 16..242 164 30.7 Plus
dikar-PD 3222 CG42799-PD 2849..3048 16..242 164 30.7 Plus
dikar-PF 3261 CG42799-PF 2849..3048 16..242 164 30.7 Plus
CG43689-PF 1251 CG43689-PF 793..909 15..141 162 35.9 Plus
CG43689-PD 1309 CG43689-PD 851..967 15..141 162 35.9 Plus
CG43689-PC 1332 CG43689-PC 874..990 15..141 162 35.9 Plus
CG43689-PH 1618 CG43689-PH 763..879 15..141 162 35.9 Plus
CG43689-PI 1648 CG43689-PI 793..909 15..141 162 35.9 Plus
CG43689-PG 1648 CG43689-PG 793..909 15..141 162 35.9 Plus
CG43689-PE 1706 CG43689-PE 851..967 15..141 162 35.9 Plus
CG15740-PB 975 CG15740-PB 19..243 97..317 158 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10221-PA 563 GI10221-PA 1..189 1..196 371 66.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22207-PA 606 GL22207-PA 1..225 1..210 438 68.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27418-PA 610 GA27418-PA 1..224 1..210 443 69.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10664-PA 166 GM10664-PA 1..120 430..549 621 99.2 Plus
Dsec\GM10662-PA 334 GM10662-PA 1..255 1..262 554 87.9 Plus
Dsec\GM19523-PA 105 GM19523-PA 1..105 446..550 531 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19640-PA 633 GD19640-PA 184..633 100..550 2150 95.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11023-PA 586 GJ11023-PA 484..586 423..550 226 54.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14292-PA 625 GK14292-PA 165..242 141..218 369 89.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25313-PA 548 GE25313-PA 1..548 1..550 1175 88.6 Plus
Dyak\GE15116-PA 124 GE15116-PA 1..101 1..101 166 78.4 Plus

LD47601.hyp Sequence

Translation from 1002 to 2654

> LD47601.hyp
MTMAACYANYDMSSLSHGMSALSALQQQQQQQQQQHSQTQQQHHHQQQQQ
HMYHAAVAAHQQQLLQQQQQQQHHRHHHQPANTSSSSNSRHSHAAATQTQ
VAAAVANSRQQQQQQQQQQQQQQQQQTASSNSNAAPAPSPQKDYSIPLHV
DCSVEYELPNQPKPPAGQRVEPLLMIHPCYFRKMESQRRSPFVNNMHATA
RAVSSSSLSSGAALGGGGSGAAVATAPSSSAARRGARAATSAQQQQQQQQ
RYQQQQQQLRQQHQQMSQMSQQAHYPQQQSSLVRQHQQQQQQQQQQQRAS
SNQSQRQSQSQSQSQSHAANSAAAAAAQASIAAAAAGQWDQLAALAARTA
LTPHHMLHPHSHYAAKGSGGGAGGGKRDAMISGSYGQTAVASGKLQQSQV
QQQQPQQQQQHCLPPPPWDATSMLMDRSPMATVPSNYQAGPDTNPMRLYS
ATPTAGAASGGSASVGGGGAVSGAGATGAVNTATDKLSGKYRQYLRSQRM
HPYAAAASLNLAAAAAAAGQTSFVPFSSAATAVAATPTFQHLPQISCYNV
*

LD47601.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
corto-PD 550 CG2530-PD 1..550 1..550 2817 100 Plus
corto-PC 550 CG2530-PC 1..550 1..550 2817 100 Plus
corto-PB 550 CG2530-PB 1..550 1..550 2817 100 Plus
corto-PE 550 CG2530-PE 1..550 1..550 2817 100 Plus
corto-PA 550 CG2530-PA 1..550 1..550 2817 100 Plus