Clone LD47602 Report

Search the DGRC for LD47602

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:476
Well:2
Vector:pOT2
Associated Gene/TranscriptSH3PX1-RA
Protein status:LD47602.pep: gold
Preliminary Size:2145
Sequenced Size:2129

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6757 2001-01-01 Release 2 assignment
CG6757 2001-11-29 Blastp of sequenced clone
CG6757 2003-01-01 Sim4 clustering to Release 3
SH3PX1 2008-04-29 Release 5.5 accounting
SH3PX1 2008-08-15 Release 5.9 accounting
SH3PX1 2008-12-18 5.12 accounting

Clone Sequence Records

LD47602.complete Sequence

2129 bp (2129 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069705

> LD47602.complete
CTTCACACTTGGTGATTCAGAATTAGTAGATATTTCTTGTCTGTTTATGG
CCCCTGTGAAGACAGGACTCGAATTAGCGTAAAGGAACGACCAGGAGAGC
ACCAAGATGACCTCGTACGTGCGTGCCATGTACGACTTTACCGGGGAGCC
GGGCTCCTCGGAGCTCTCCATCGCGACTGGCGACGTGCTCTCGGTGACCC
GGAGCGATGTGGGTGAAGGCTGGTGGGAGGGCAAGAATGCCCGTGGCCAG
ATTGGCCTCTTCCCGGCTGCGTACGTGGAGGTGATGTCGGCGGCCGAAGC
CCAGAAGCTGAGCGCCAGTGGAGCGACGTCGGTGCCACAGGTTCCGGATC
CCTTCGCCTCGCCCCCTTTGCCGCGTTACGATCAGACGGCGGATGATGAT
GGCAGCAACTGGGATGATGAGGACGATTGGAGCGACGACAATGACACGTA
CTCGGAAATTGGTCCAGGTGGCCAGAAGTCTGCGGGACAGTCGGCTCGCG
CTGGCGGATTGTCGCATTCCACCAGTGACTACGATAACAAACACCTGCCC
ATCGCGCCCAACGATGATACCCAATCACTGGCCTCCGTGGCTGGTGGGAC
TGGTGCTGCTGGCACCGTCAAAAAGGGCATGTTCGCCAAAAGTTCCGATT
CATATATACTCGGCTTGTCCAGCACCAAGGAGAAGATACCCGAATGCGAG
ATGGCCTACATTACACAGGTGGAGGACTCGATCTACCAGTGGACGCAGAA
CCATTCGCCCTACTCCGTTGTGGTGGCCAGTCCCAAAAAGGAGTCCAAAT
TCAAGGGGATGAAGACGTTCATTGCCTACCAACTGACGCCTAGCTTCAAC
AACATATCCGTGTCACGTCGCTACAAGCACTTCGACTGGCTGCACGAACG
TTTGGTGGACAAGTTTTGCCTGATTCCGGTGCCACCGCTGCCGGACAAGC
AGATCTCCGGCCGCTATGAGGAGCAATTCGTGGAGCATCGACGTGTGCAG
CTGCAGGAGTTCGTCGACTGGGTGTGCCGCCATCCGGTGATCTCCAAATG
CGAGGTCTGGTACCATTTCCTCACTTGCCGCGACGAGAAGATCTGGAAGT
CGGGCAAACGCAAGGCGGAACGGGATCCCTACATGGGCGTCAACTACTGC
CTGGCCATCTCGCCGCCGGACAAGAACCTGCTGCACTCTAAGGTGGACGC
ACAGGTGGAGCTGGGCACCCAGTTCATACACAGCATGGACGTGGCAGTAC
GCAACCTGAACAATATATCCAACGACATGGCCAAGCGCTCCATGTCGCAG
AGTAAAAAGGAGTTCCAGCGCATTGGCGACGGACTCTCCGACCTGGCCAA
GGCATTGGCCATCGATGAGCGGCGTGCGCCCACCCGAAACGCGGTTCCGC
TCTCCGAGAGCGTCGGCCGCATCGGTGGCATCTTTATCGGTATTGGACAG
GCCTTTGGCGACCAGCCAAAGCATGATTGGATTCCCCTCTCGGATCGACT
TCACATCTACAGGGGCGTTCTCAACTGCTTTCCGGACATCTTCTCCACGC
ACAAGGGTGCCATACAGAAGCGAAAGGACTGCGAGAAATTGGCCGGCGAG
GGCAGGATGAATAATCCCCAGTTGCACGACGTTAACCGGCGCACAGATGT
CGTCTCCTACACGGTGCTGGCCGAGCTGACCCACTTCAAGAGCGAGCGGG
ATACGCATTTGAAGCATACGCTTAAGAATTTCATTGCCGAACAGATTAAG
TTTTACCAGGGCGTGGTGGCGCGCCTGCAGGAGGCCAGCCGTCAGATTGA
GTAGATTGGCCCTTGGCCCATGGCGACGACGACTCATCGCTGAAGAGATC
GACGGCTGGGAGCACAAAGAAACCGCACCGGGCACACACTTCCACACAGA
GATACATAGCTGAAAACATTCGCACGCGCGCATTTCAAATGCCTTCGAAA
GGAACTCTTACTTTAAGCGTGGTTCTAACTAAATGTTAAACAGAAAAAAT
ATTACATAATGTTGTTTGTAAGTGAAAAGTTGCGTATTTATACAGAAATT
AACTTTTATATGCCTATTATACACTGAACTTGAGATGCAAATATAACTAT
ATTTATACAGAAAAAAAAAAAAAAAAAAA

LD47602.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
SH3PX1-RA 2352 SH3PX1-RA 149..2260 1..2112 10560 100 Plus
SH3PX1.a 2922 SH3PX1.a 149..2260 1..2112 10560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9704777..9705637 861..1 4245 99.5 Minus
chr3L 24539361 chr3L 9703340..9703993 1513..860 3240 99.7 Minus
chr3L 24539361 chr3L 9702254..9702862 2110..1511 2825 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9712931..9713791 861..1 4305 100 Minus
3L 28110227 3L 9711499..9712152 1513..860 3270 100 Minus
3L 28110227 3L 9710420..9711021 2112..1511 3010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9706031..9706891 861..1 4305 100 Minus
3L 28103327 3L 9704599..9705252 1513..860 3270 100 Minus
3L 28103327 3L 9703520..9704121 2112..1511 3010 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:32:45 has no hits.

LD47602.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:33:39 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9702254..9702860 1513..2110 98 <- Minus
chr3L 9703341..9703993 860..1512 99 <- Minus
chr3L 9704779..9705637 1..859 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:46 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 1..1698 107..1804 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:55 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 1..1698 107..1804 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:15 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 1..1698 107..1804 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:51:59 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 1..1698 107..1804 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:14 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 1..1698 107..1804 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:00:36 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 33..2142 1..2110 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:55 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 33..2142 1..2110 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:15 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 37..2146 1..2110 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:51:59 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 33..2142 1..2110 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:14 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
SH3PX1-RA 37..2146 1..2110 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:39 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9710422..9711019 1513..2110 100 <- Minus
3L 9711500..9712152 860..1512 100 <- Minus
3L 9712933..9713791 1..859 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:39 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9710422..9711019 1513..2110 100 <- Minus
3L 9711500..9712152 860..1512 100 <- Minus
3L 9712933..9713791 1..859 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:39 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9710422..9711019 1513..2110 100 <- Minus
3L 9711500..9712152 860..1512 100 <- Minus
3L 9712933..9713791 1..859 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:15 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9703522..9704119 1513..2110 100 <- Minus
arm_3L 9704600..9705252 860..1512 100 <- Minus
arm_3L 9706033..9706891 1..859 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:10 Download gff for LD47602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9706033..9706891 1..859 100   Minus
3L 9703522..9704119 1513..2110 100 <- Minus
3L 9704600..9705252 860..1512 100 <- Minus

LD47602.pep Sequence

Translation from 106 to 1803

> LD47602.pep
MTSYVRAMYDFTGEPGSSELSIATGDVLSVTRSDVGEGWWEGKNARGQIG
LFPAAYVEVMSAAEAQKLSASGATSVPQVPDPFASPPLPRYDQTADDDGS
NWDDEDDWSDDNDTYSEIGPGGQKSAGQSARAGGLSHSTSDYDNKHLPIA
PNDDTQSLASVAGGTGAAGTVKKGMFAKSSDSYILGLSSTKEKIPECEMA
YITQVEDSIYQWTQNHSPYSVVVASPKKESKFKGMKTFIAYQLTPSFNNI
SVSRRYKHFDWLHERLVDKFCLIPVPPLPDKQISGRYEEQFVEHRRVQLQ
EFVDWVCRHPVISKCEVWYHFLTCRDEKIWKSGKRKAERDPYMGVNYCLA
ISPPDKNLLHSKVDAQVELGTQFIHSMDVAVRNLNNISNDMAKRSMSQSK
KEFQRIGDGLSDLAKALAIDERRAPTRNAVPLSESVGRIGGIFIGIGQAF
GDQPKHDWIPLSDRLHIYRGVLNCFPDIFSTHKGAIQKRKDCEKLAGEGR
MNNPQLHDVNRRTDVVSYTVLAELTHFKSERDTHLKHTLKNFIAEQIKFY
QGVVARLQEASRQIE*

LD47602.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25132-PA 559 GF25132-PA 1..559 1..565 2349 83 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14014-PA 565 GG14014-PA 1..565 1..565 3045 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15945-PA 564 GH15945-PA 1..564 1..565 2321 79.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
SH3PX1-PA 565 CG6757-PA 1..565 1..565 2991 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16597-PA 566 GI16597-PA 1..566 1..565 2447 83.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17876-PA 561 GL17876-PA 1..561 1..565 2587 88.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19839-PA 561 GA19839-PA 1..561 1..565 2587 88.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24848-PA 565 GM24848-PA 1..565 1..565 3056 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12900-PA 565 GD12900-PA 1..565 1..565 3046 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12849-PA 563 GJ12849-PA 1..563 1..565 2495 85.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13598-PA 562 GK13598-PA 1..562 1..565 2391 85.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21216-PA 565 GE21216-PA 1..565 1..565 3043 99.1 Plus

LD47602.hyp Sequence

Translation from 106 to 1803

> LD47602.hyp
MTSYVRAMYDFTGEPGSSELSIATGDVLSVTRSDVGEGWWEGKNARGQIG
LFPAAYVEVMSAAEAQKLSASGATSVPQVPDPFASPPLPRYDQTADDDGS
NWDDEDDWSDDNDTYSEIGPGGQKSAGQSARAGGLSHSTSDYDNKHLPIA
PNDDTQSLASVAGGTGAAGTVKKGMFAKSSDSYILGLSSTKEKIPECEMA
YITQVEDSIYQWTQNHSPYSVVVASPKKESKFKGMKTFIAYQLTPSFNNI
SVSRRYKHFDWLHERLVDKFCLIPVPPLPDKQISGRYEEQFVEHRRVQLQ
EFVDWVCRHPVISKCEVWYHFLTCRDEKIWKSGKRKAERDPYMGVNYCLA
ISPPDKNLLHSKVDAQVELGTQFIHSMDVAVRNLNNISNDMAKRSMSQSK
KEFQRIGDGLSDLAKALAIDERRAPTRNAVPLSESVGRIGGIFIGIGQAF
GDQPKHDWIPLSDRLHIYRGVLNCFPDIFSTHKGAIQKRKDCEKLAGEGR
MNNPQLHDVNRRTDVVSYTVLAELTHFKSERDTHLKHTLKNFIAEQIKFY
QGVVARLQEASRQIE*

LD47602.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
SH3PX1-PA 565 CG6757-PA 1..565 1..565 2991 100 Plus