BDGP Sequence Production Resources |
Search the DGRC for LD47606
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 476 |
Well: | 6 |
Vector: | pOT2 |
Associated Gene/Transcript | CG43780-RA |
Protein status: | LD47606.pep: gold |
Preliminary Size: | 1518 |
Sequenced Size: | 1412 |
Gene | Date | Evidence |
---|---|---|
CG8600 | 2001-01-01 | Release 2 assignment |
CG8600 | 2001-07-04 | Blastp of sequenced clone |
CG8600 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8600 | 2008-04-29 | Release 5.5 accounting |
CG8600 | 2008-08-15 | Release 5.9 accounting |
CG8600 | 2008-12-18 | 5.12 accounting |
1412 bp (1412 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060444
> LD47606.complete TTTTCGTAGCAGCAAAGTGGCTGAAATTAATAACATTTAAGAGCAGAAGT GTGTAACACACCTGAATGGGACTTGTGCCAATCTCAGTGACCACCAATCG CGCGCAAATGACCATTGAGCATTGTGCAGCAGGCTATTGAGGCTCTTGCA AGTGACCACACCCCTATAAGACTATGTCCACAATCGAAGAGGAACGCAAG GCGTACGAAAAGAATCCCTACTTCACCGGCCACATCTACGGCAACTTCTC GCCGTTTTATGTGACCATTGCCATCTGCACGGTTGTCCTGGGCACGATCA TAATACTGAACATTATCTTGGGCTGCTGCTCCAAGCATCGCAAGTACTGG CAGGACAGGCACACGGGCAATCGCTGGTTGGTTTCCATTTGGTCTGCCAC GCCCCACAATCAGCCGCCATTGGATTTCACTGAGCTGAAGGACGCCTCAT ACTTTCAGCGCTTCCATCCCACAACCCATCAGCAAGTGTTCCCCGACGAC GTTGTCATCGGCGTTGACGACTTGGAGCCCGTGCACTCGGCGCACCATCA TCATCACCAGCAGCAGCACCAGCGTCCACCACGTCCAGAGGGTCGCACTT TGCACCAGCAGCGCCAGCGCGAGGAATACGTGGAGTTGCAGAAGCGCGAG AGCGACATCTAAGTAGCAATGGCTCTTTACTTCCTTTATCCCGCCGTGGC CGCCGTCGCCCTGTTCATCGTGGGCGTTATCATTGTCATGCTGCGCTACG GACCGCGTTTGTGCGGTTTGCGCCACCATGCGCTTCCCGATGACGAGGAT CTGCGGGGAAAGACGTATGAGCATGAGATTAGCTATGCCTAATATTGGGG TGTTCAGGGGTGTCCCATTAATCCCATTCAACCAATGGGTATTGTTGGTG ATTTCTTGGACAGCCCTGCCTTTAATTTACATACTTATACATGCCGGCAA TGCTACGAATTGCTTCTTATATATCTCTCTCCCCCCAAAACTAATCCTAG CTACTGTAAGAGCCCACTAACCCGTCTGCACCCACCAACCATATCAGTTT TGCATGCAGTACAAATAGTTTCATTAGCAACCAGTTTTGTTCGAGCCGAT TCCATTCCATTAATCGCAATCTGACAATGTGCCTTTCACGTAGAGACTCG TAAGAAATTTATACCGTCCAAGTGTCTTTTCTAGCGCCGTAAGATCGAAT TGTATTTTTACATTTAATACCCATTTAGGGTAGTCTGTCTACAGATGCTG CATTTAATGTTGTCCAATATTCTACTCGTATGAAAATATCAGTGTCTTGT ATCTACTACAAACTCTATACATTTGTATTCGTCCATTAGTTTTGTAATAT TGTATTTTGAAGTTGCATCAAATAAATCTACGGCCCCCAAAATAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 7325678..7326602 | 1393..468 | 4445 | 98.9 | Minus |
chr3L | 24539361 | chr3L | 7326675..7327032 | 467..110 | 1790 | 100 | Minus |
chr3L | 24539361 | chr3L | 7327213..7327322 | 110..1 | 550 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 7326642..7327569 | 1395..468 | 4640 | 100 | Minus |
3L | 28103327 | 3L | 7327642..7327999 | 467..110 | 1790 | 100 | Minus |
3L | 28103327 | 3L | 7328180..7328289 | 110..1 | 550 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6902 | 542..662 | 139 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6875 | 542..673 | 131 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1578 | 542..579 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6875 | 542..659 | 117 | 59.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3324 | 526..588 | 117 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2477..2531 | 537..588 | 114 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6849 | 544..668 | 114 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2511 | 535..612 | 113 | 62 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7325678..7326602 | 468..1393 | 98 | <- | Minus |
chr3L | 7326675..7327031 | 111..467 | 100 | <- | Minus |
chr3L | 7327213..7327322 | 1..110 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8600-RB | 1..669 | 174..842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8600-RB | 1..669 | 174..842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43780-RA | 1..489 | 174..662 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8600-RA | 1..489 | 174..662 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43780-RA | 1..489 | 174..662 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8600-RB | 55..1447 | 1..1393 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8600-RB | 55..1447 | 1..1393 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43781-RA | 38..1430 | 1..1393 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8600-RA | 36..1428 | 1..1393 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43780-RA | 38..1430 | 1..1393 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7333544..7334469 | 468..1393 | 100 | <- | Minus |
3L | 7334542..7334898 | 111..467 | 100 | <- | Minus |
3L | 7335080..7335189 | 1..110 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7333544..7334469 | 468..1393 | 100 | <- | Minus |
3L | 7334542..7334898 | 111..467 | 100 | <- | Minus |
3L | 7335080..7335189 | 1..110 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7333544..7334469 | 468..1393 | 100 | <- | Minus |
3L | 7334542..7334898 | 111..467 | 100 | <- | Minus |
3L | 7335080..7335189 | 1..110 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7326644..7327569 | 468..1393 | 100 | <- | Minus |
arm_3L | 7327642..7327998 | 111..467 | 100 | <- | Minus |
arm_3L | 7328180..7328289 | 1..110 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7326644..7327569 | 468..1393 | 100 | <- | Minus |
3L | 7327642..7327998 | 111..467 | 100 | <- | Minus |
3L | 7328180..7328289 | 1..110 | 100 | Minus |
Translation from 173 to 661
> LD47606.hyp MSTIEEERKAYEKNPYFTGHIYGNFSPFYVTIAICTVVLGTIIILNIILG CCSKHRKYWQDRHTGNRWLVSIWSATPHNQPPLDFTELKDASYFQRFHPT THQQVFPDDVVIGVDDLEPVHSAHHHHHQQQHQRPPRPEGRTLHQQRQRE EYVELQKRESDI*
Translation from 173 to 661
> LD47606.pep MSTIEEERKAYEKNPYFTGHIYGNFSPFYVTIAICTVVLGTIIILNIILG CCSKHRKYWQDRHTGNRWLVSIWSATPHNQPPLDFTELKDASYFQRFHPT THQQVFPDDVVIGVDDLEPVHSAHHHHHQQQHQRPPRPEGRTLHQQRQRE EYVELQKRESDI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23858-PA | 153 | GF23858-PA | 1..153 | 1..162 | 793 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14978-PA | 161 | GG14978-PA | 1..161 | 1..162 | 852 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16095-PA | 155 | GH16095-PA | 1..155 | 1..162 | 677 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG43780-PA | 162 | CG43780-PA | 1..162 | 1..162 | 901 | 100 | Plus |
CG43780-PB | 157 | CG43780-PB | 1..157 | 1..162 | 855 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12358-PA | 156 | GI12358-PA | 1..156 | 1..162 | 747 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21151-PA | 155 | GL21151-PA | 1..155 | 1..162 | 801 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21196-PA | 155 | GA21196-PA | 1..155 | 1..162 | 801 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13774-PA | 162 | GM13774-PA | 1..162 | 1..162 | 868 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13072-PA | 162 | GD13072-PA | 1..162 | 1..162 | 872 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12251-PA | 155 | GJ12251-PA | 1..155 | 1..162 | 749 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16670-PA | 162 | GK16670-PA | 1..162 | 1..162 | 776 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20425-PA | 161 | GE20425-PA | 1..161 | 1..162 | 855 | 99.4 | Plus |