Clone LD47625 Report

Search the DGRC for LD47625

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:476
Well:25
Vector:pOT2
Associated Gene/TranscriptCG32486-RD
Protein status:LD47625.pep: gold
Preliminary Size:2311
Sequenced Size:2347

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14954 2001-01-01 Release 2 assignment
CG32486 2001-07-04 Blastp of sequenced clone
CG32486 2003-01-01 Sim4 clustering to Release 3
CG32486 2008-04-29 Release 5.5 accounting
CG32486 2008-08-15 Release 5.9 accounting
CG32486 2008-12-18 5.12 accounting

Clone Sequence Records

LD47625.complete Sequence

2347 bp (2347 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052026

> LD47625.complete
ATTTTTTGGCGAGCGGACGTGTCGGCGGACAAAAAGCTTGCAAACAGAAC
AGAACGGAAGAACACAGAAGAGAACGACACGACACGGACAGCGGGGAAAG
GTGGCAATTGAAAGAAAGTGCCATACTTAGTGTGCGAGCGAAAGAGAGAG
AGAGCAAACTGGGTATTGCTTGTGTGTGTGTAGTAGTTTAGTGGTCGTGT
GTGTGGGAGTTTGTGTACGAAGCGAGTGGCAAAGAAAAACACAACAAACA
TTATTCCAAGAAAATTTCCAATCATGTCGGTGGAATCCTCCAGTTCGGCG
GTCCAACAGCCGCCGTCGTCCTCGAACCTACCGCTCCTGGGCGACAACCA
GGCGGTGGCCACGACCAGCTCCGCCTCCTCGGCCTCTTCCTCTTCCACAT
CGTCGTCCTCCTCGTCGGTGGGCGGCGGCAATGTGGTGGGCGTGCCGCTG
GACACGCAGGGCAGCGGAGAACCGCCGGCCAAGAAACAGTTGTTGGACGG
AGGGGGCGGTGGTGCCACCAGCAGCAGCGGCAGCAGCTTGCTTTCCAGTG
CCGCAGCCGCCTCGGGAATGCACGAAAAGCTGGCCCACCGCATCTCCAAT
GCCCTGTGCTGTGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCA
GTGCCAGATGGGCCATCTGATGTGCGCCGCCTGTTTCACGCATCTGCTGG
CGGATGGACGCTTGCGCGATCAGATTGCCACGTGCCCCAATTGCCGCGTG
GAAATTTCTAAGAGCACTGCGTCGCGCAACTTGGCCGTGGAGAAGGCCGC
CTCAGAATTGCCCAGCGAGTGTCAATTCTGCAACAAGGAGTTCCCATACA
AATCTCTCGAACGCCATGAACAACACGAGTGCCAGGAGCGCCCGACCAAG
TGCAAATACCATCGCATTGGCTGTCAGTGGCGGGGACCCTACCACGAGAC
CAACGAGCATGAGCGCAACTGCTTGCATCCCCAGAAGTCTGGCTACGAGG
TAATGGCAGCCCTGGAGGCCCACGACGATAGGATCAAGGAGGAGAAGAAG
ATGTTTAACACCCTGATTGACTTGCTTAGCTACGAGAAGATCATATTCAA
TGACCTCCAAATGAAACCCTACCGCACAGACGAGTACGTGCACAAGCTCT
TTTATGAGACGGCCCGCTTCTCGGCCTTCAATCAACAGTGGGTGGTGAAG
GCGCGCATCAACAACAGCCAGCGCGATCCGCATCAGTCCAACGAGCGGAC
CATCACCTATCAGCTGATCCTCAAGACCAAGACCAGCACGCCCATGAGCA
TACATTTCTTTGCGCTGAAGGGTCCGTTCTCGGATATGAAAGTTTCCACG
CAGATATACAAACATGAATTCACCGAGACGAGTACCGAAAGCGAGTACTA
TGTCTTGCCATTGCCAGATGGAGTCGGCGGTAGCGGCTCCAGCGAATGCA
ACCGTATGCTGGCCAACAAAGGCATTAACTTCCGCCTGCTCATGTTTCTG
CTGAACAAGTAGACGCTTTCGCTGCTCAGCGAACTAAGATTTTCAAATTA
GCTTAAGTTTGTTGTTTCAAACTCTTGAATGTGCAAAACCTAGATATAGT
TGACTTATATTTTCTATCAATGTATATGTAATACTTCGAGGCGGTAACGA
CGAGCCTGGGCCTAACCGAGAACCGCTTCCCGATAGCCCGCAACCCGTTC
CCGATCCCGTTCATGTTTCAATGAAGTTTAAGATCACGCAGACGTAACGC
GGTAGGTTGTAACCTAAGTTTAGTGTAGATTCGGCTACATTTTGTACATG
AGATGAGATAGCGCCATTTTATGGAGACACCTTTCAATAGCTATGTTAAC
TCTACTGTTAGTGCTGGTGGCGAAATGGATACGATACGATGGACAAGACG
ACTGATGTGTGTTTGACTAGCGTTTAATGATCTCACAGGAAGGAGCCAGC
CCACGCTAACGCGATAATACCGATAATAACCATAAAATAGCCGTAGATTA
ACTGTCCGGACGCAAGGACCTCGAGTCCACGGCTCCGTTTTCACTGTAAG
AAGAACAACACCAAGTTGAAATTCGAACCCTAAGCAGGCGCATATAGAAC
GCTCTATGATATAACGTAGCGATAGACTAACTACGATCACATAGCCCGGG
CCGTAAAATGCAAAGATCCCCCCAAAAGTCCTCACGTTCGAATCTTGTCT
AATCCTCGTTCTGTTGACCCTCTTACGATTTAATGCTTACAACTTACATT
CGTACGTGTAATATTTATATGCATCGTTAAATGATAACTATACCTAATGC
ATATATAATAAAGATACTTCTTAATAAACAAAAAAAAAAAAAAAAAA

LD47625.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-RD 2491 CG32486-RD 145..2477 1..2333 11665 100 Plus
CG32486.a 2352 CG32486.a 128..1878 1..1751 8755 100 Plus
CG32486.a 2352 CG32486.a 1878..2350 1861..2333 2365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3055301..3056146 2329..1484 4230 100 Minus
chr3L 24539361 chr3L 3069541..3070191 651..1 3210 99.5 Minus
chr3L 24539361 chr3L 3056386..3056664 1380..1102 1395 100 Minus
chr3L 24539361 chr3L 3056823..3056975 1102..950 765 100 Minus
chr3L 24539361 chr3L 3057034..3057157 949..826 620 100 Minus
chr3L 24539361 chr3L 3057222..3057335 825..712 570 100 Minus
chr3L 24539361 chr3L 3056212..3056316 1484..1380 525 100 Minus
chr3L 24539361 chr3L 3057460..3057521 710..649 310 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3055904..3056753 2333..1484 4250 100 Minus
3L 28110227 3L 3070162..3070812 651..1 3255 100 Minus
3L 28110227 3L 3056993..3057271 1380..1102 1395 100 Minus
3L 28110227 3L 3057430..3057582 1102..950 765 100 Minus
3L 28110227 3L 3057641..3057764 949..826 620 100 Minus
3L 28110227 3L 3057829..3057944 825..710 580 100 Minus
3L 28110227 3L 3056819..3056923 1484..1380 525 100 Minus
3L 28110227 3L 3058066..3058127 710..649 310 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3055904..3056753 2333..1484 4250 100 Minus
3L 28103327 3L 3070162..3070812 651..1 3255 100 Minus
3L 28103327 3L 3056993..3057271 1380..1102 1395 100 Minus
3L 28103327 3L 3057430..3057582 1102..950 765 100 Minus
3L 28103327 3L 3057641..3057764 949..826 620 100 Minus
3L 28103327 3L 3057829..3057944 825..710 580 100 Minus
3L 28103327 3L 3056819..3056923 1484..1380 525 100 Minus
3L 28103327 3L 3058066..3058127 710..649 310 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:17:13 has no hits.

LD47625.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:18:12 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3055301..3056145 1485..2329 100 <- Minus
chr3L 3056212..3056315 1381..1484 100 <- Minus
chr3L 3056386..3056663 1103..1380 100 <- Minus
chr3L 3056823..3056975 950..1102 100 <- Minus
chr3L 3057034..3057157 826..949 100 <- Minus
chr3L 3057222..3057336 711..825 99 <- Minus
chr3L 3057460..3057518 652..710 100 <- Minus
chr3L 3069541..3070191 1..651 92   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:56:38 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 1..1239 274..1512 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:41 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 1..1239 274..1512 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:47:10 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 1..1239 274..1512 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:46:01 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 1..1239 274..1512 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:38 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 1..1239 274..1512 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:36 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 28..2356 1..2329 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:41 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 28..2356 1..2329 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:47:10 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 28..2356 1..2329 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:46:02 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 28..2356 1..2329 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:38 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 28..2356 1..2329 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:12 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3055908..3056752 1485..2329 100 <- Minus
3L 3056819..3056922 1381..1484 100 <- Minus
3L 3056993..3057270 1103..1380 100 <- Minus
3L 3057430..3057582 950..1102 100 <- Minus
3L 3057641..3057764 826..949 100 <- Minus
3L 3057829..3057943 711..825 100 <- Minus
3L 3058066..3058124 652..710 100 <- Minus
3L 3070162..3070812 1..651 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:12 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3055908..3056752 1485..2329 100 <- Minus
3L 3056819..3056922 1381..1484 100 <- Minus
3L 3056993..3057270 1103..1380 100 <- Minus
3L 3057430..3057582 950..1102 100 <- Minus
3L 3057641..3057764 826..949 100 <- Minus
3L 3057829..3057943 711..825 100 <- Minus
3L 3058066..3058124 652..710 100 <- Minus
3L 3070162..3070812 1..651 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:12 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3055908..3056752 1485..2329 100 <- Minus
3L 3056819..3056922 1381..1484 100 <- Minus
3L 3056993..3057270 1103..1380 100 <- Minus
3L 3057430..3057582 950..1102 100 <- Minus
3L 3057641..3057764 826..949 100 <- Minus
3L 3057829..3057943 711..825 100 <- Minus
3L 3058066..3058124 652..710 100 <- Minus
3L 3070162..3070812 1..651 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:47:10 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3057641..3057764 826..949 100 <- Minus
arm_3L 3057829..3057943 711..825 100 <- Minus
arm_3L 3058066..3058124 652..710 100 <- Minus
arm_3L 3055908..3056752 1485..2329 100 <- Minus
arm_3L 3056819..3056922 1381..1484 100 <- Minus
arm_3L 3056993..3057270 1103..1380 100 <- Minus
arm_3L 3057430..3057582 950..1102 100 <- Minus
arm_3L 3070162..3070812 1..651 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:54 Download gff for LD47625.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3055908..3056752 1485..2329 100 <- Minus
3L 3056819..3056922 1381..1484 100 <- Minus
3L 3056993..3057270 1103..1380 100 <- Minus
3L 3057430..3057582 950..1102 100 <- Minus
3L 3057641..3057764 826..949 100 <- Minus
3L 3057829..3057943 711..825 100 <- Minus
3L 3058066..3058124 652..710 100 <- Minus
3L 3070162..3070812 1..651 100   Minus

LD47625.pep Sequence

Translation from 273 to 1511

> LD47625.pep
MSVESSSSAVQQPPSSSNLPLLGDNQAVATTSSASSASSSSTSSSSSSVG
GGNVVGVPLDTQGSGEPPAKKQLLDGGGGGATSSSGSSLLSSAAAASGMH
EKLAHRISNALCCAVCLDLPKTAMYQCQMGHLMCAACFTHLLADGRLRDQ
IATCPNCRVEISKSTASRNLAVEKAASELPSECQFCNKEFPYKSLERHEQ
HECQERPTKCKYHRIGCQWRGPYHETNEHERNCLHPQKSGYEVMAALEAH
DDRIKEEKKMFNTLIDLLSYEKIIFNDLQMKPYRTDEYVHKLFYETARFS
AFNQQWVVKARINNSQRDPHQSNERTITYQLILKTKTSTPMSIHFFALKG
PFSDMKVSTQIYKHEFTETSTESEYYVLPLPDGVGGSGSSECNRMLANKG
INFRLLMFLLNK*

LD47625.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10226-PA 407 GF10226-PA 3..407 2..412 1872 89.8 Plus
Dana\GF21697-PA 406 GF21697-PA 57..405 90..409 369 25.7 Plus
Dana\GF23840-PA 329 GF23840-PA 3..328 73..409 348 26.7 Plus
Dana\GF23937-PA 328 GF23937-PA 7..188 32..229 175 29 Plus
Dana\GF23936-PA 322 GF23936-PA 81..187 113..229 153 31.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14485-PA 409 GG14485-PA 1..409 1..412 2164 97.8 Plus
Dere\sina-PA 314 GG13584-PA 73..179 113..229 153 31.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16998-PA 412 GH16998-PA 3..412 2..412 1826 84.7 Plus
Dgri\GH16597-PA 311 GH16597-PA 53..176 96..229 153 29 Plus
Dgri\GH16598-PA 315 GH16598-PA 19..176 55..229 151 26.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-PD 412 CG32486-PD 1..412 1..412 2163 100 Plus
sina-PC 314 CG9949-PC 15..179 27..229 193 28 Plus
sina-PB 314 CG9949-PB 15..179 27..229 193 28 Plus
sina-PA 314 CG9949-PA 15..179 27..229 193 28 Plus
sinah-PC 351 CG13030-PC 106..227 113..251 172 30.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11411-PA 407 GI11411-PA 3..407 2..412 1865 86.5 Plus
Dmoj\GI13552-PA 351 GI13552-PA 3..350 60..409 412 30.4 Plus
Dmoj\GI10072-PA 367 GI10072-PA 69..364 113..407 291 26.1 Plus
Dmoj\GI12444-PA 322 GI12444-PA 78..184 113..229 155 32.2 Plus
Dmoj\GI12443-PA 314 GI12443-PA 73..179 113..229 150 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15709-PA 453 GL15709-PA 150..451 103..409 365 30.6 Plus
Dper\GL26080-PA 382 GL26080-PA 80..373 113..407 278 27.1 Plus
Dper\GL20853-PA 340 GL20853-PA 10..250 24..273 164 24.8 Plus
Dper\GL20852-PA 314 GL20852-PA 73..179 113..229 152 31.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16940-PA 411 GA16940-PA 3..411 2..412 1796 87 Plus
Dpse\GA23769-PA 356 GA23769-PA 10..354 60..409 390 29.3 Plus
Dpse\GA25276-PA 382 GA25276-PA 80..373 113..407 278 27.1 Plus
Dpse\GA11985-PA 340 GA11985-PA 10..250 24..273 162 24.4 Plus
Dpse\GA22147-PA 314 GA22147-PA 73..179 113..229 152 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14088-PA 412 GM14088-PA 1..412 1..412 2218 99.3 Plus
Dsec\GM25664-PA 314 GM25664-PA 73..179 113..229 153 31.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13360-PA 284 GD13360-PA 1..284 129..412 1572 99.6 Plus
Dsim\GD14671-PA 384 GD14671-PA 73..179 113..229 151 31.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13607-PA 406 GJ13607-PA 3..406 2..412 1824 85.7 Plus
Dvir\GJ11912-PA 349 GJ11912-PA 11..348 68..409 371 27.7 Plus
Dvir\GJ18364-PA 367 GJ18364-PA 46..364 90..407 328 28.8 Plus
Dvir\GJ12343-PA 313 GJ12343-PA 69..175 113..229 154 32.2 Plus
Dvir\sina-PA 314 GJ12342-PA 73..179 113..229 152 31.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12313-PA 408 GK12313-PA 3..408 2..412 1748 85 Plus
Dwil\GK24544-PA 348 GK24544-PA 59..345 113..407 303 25.8 Plus
Dwil\GK16730-PA 447 GK16730-PA 135..438 102..409 235 23.7 Plus
Dwil\sina-PA 331 GK20872-PA 90..196 113..229 152 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21673-PA 408 GE21673-PA 1..408 1..412 2154 97.6 Plus
Dyak\GE15378-PA 359 GE15378-PA 1..359 1..412 1572 81.1 Plus
Dyak\GE19882-PA 347 GE19882-PA 102..223 113..251 159 30.1 Plus
Dyak\GE19881-PA 314 GE19881-PA 73..179 113..229 153 31.4 Plus

LD47625.hyp Sequence

Translation from 273 to 1511

> LD47625.hyp
MSVESSSSAVQQPPSSSNLPLLGDNQAVATTSSASSASSSSTSSSSSSVG
GGNVVGVPLDTQGSGEPPAKKQLLDGGGGGATSSSGSSLLSSAAAASGMH
EKLAHRISNALCCAVCLDLPKTAMYQCQMGHLMCAACFTHLLADGRLRDQ
IATCPNCRVEISKSTASRNLAVEKAASELPSECQFCNKEFPYKSLERHEQ
HECQERPTKCKYHRIGCQWRGPYHETNEHERNCLHPQKSGYEVMAALEAH
DDRIKEEKKMFNTLIDLLSYEKIIFNDLQMKPYRTDEYVHKLFYETARFS
AFNQQWVVKARINNSQRDPHQSNERTITYQLILKTKTSTPMSIHFFALKG
PFSDMKVSTQIYKHEFTETSTESEYYVLPLPDGVGGSGSSECNRMLANKG
INFRLLMFLLNK*

LD47625.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-PD 412 CG32486-PD 1..412 1..412 2163 100 Plus
sina-PC 314 CG9949-PC 15..179 27..229 193 28 Plus
sina-PB 314 CG9949-PB 15..179 27..229 193 28 Plus
sina-PA 314 CG9949-PA 15..179 27..229 193 28 Plus
sinah-PC 351 CG13030-PC 106..227 113..251 172 30.8 Plus