Clone LD47639 Report

Search the DGRC for LD47639

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:476
Well:39
Vector:pOT2
Associated Gene/TranscriptCG8399-RA
Protein status:LD47639.pep: gold
Preliminary Size:2420
Sequenced Size:2363

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8399 2001-01-01 Release 2 assignment
CG8399 2002-05-24 Blastp of sequenced clone
CG8399 2003-01-01 Sim4 clustering to Release 3
CG8399 2008-04-29 Release 5.5 accounting
CG8399 2008-08-15 Release 5.9 accounting
CG8399 2008-12-18 5.12 accounting

Clone Sequence Records

LD47639.complete Sequence

2363 bp (2363 high quality bases) assembled on 2002-05-24

GenBank Submission: AY118595

> LD47639.complete
TCGTTGCGTTCGGTTTGGCCATATTCACTCTGTTGATTGGACAAGAAGTA
CGGAGCTAACGCAGCTCGGAGTGTTTTTCGAATATTGTTGACGGCGATTT
TAGGTGCTCCATTCATAGATGATGCAGGCGCTGACGATGCGGAGTTGGCT
GGCAACGCTGGTGACGGCGCTGCTGGCGGTGGCCATCTGGCCGGATCCGG
GACAGAGTCTGCCGCAAGGTGCTCCGGAAACCGTGTGCGACACCATGCTG
CCGTTCCACTCCGGCGGCAGTGTGCTACCCCAGAACAGTGTGTCGCCCTT
CAGCGTGGAGACCTCTTCCTCGACACTTGGCCAGGGTCAGACGCTTCGCG
TGGATCTGACGGGTGTGCCGGCGGGCTTAAGCTTCGGTGGCTACATGATC
CAGGCGCGCAATCGGAATCCACCCCATCAGATCATCGGACAATTTGGACC
CGCCCGCGATGGCACCATTAAGCTAATGAACTGCGAGAACTCCGTGAATA
ATTCAGCCACGCATAGCAATGCAGGACCCAAGCAGCAGGTTATCCTGGAG
TGGCAATCACCAGTGGACTTTCTCGGCCAGGTGGTCTTCAATGCCACCAT
TGCCCAGAGCTACAATGAATTCTGGGTGGGCGTGCCATCTCAGCCCGTTC
AGATAGTCCGTCGCGATCTGTCCGCTGCTCCACCACTACCCACACAGAGT
CCATCTGCCCCTGCGGGCACCACCCGTGCTCCCTATGTGCCGCCCAGCTA
TGTGGCGCCAAACAACGTGGTTGCCGTTTCCTCGGATCCCATCTACAATG
GCTGCGGACAGAGCAAGAACTGTTTTGGATTCCCCGACGGTTGCGTGGCG
ACGAAGAGCTGTACCTCCATCACTGTGGTCACGGTGCGTGGAGATGTCTT
CGAGTTTGAGATTCAGTCCGGCAAGGGAACCAATGCTGCTTACGTGGCAG
TTGGTCTTTCTGATGACGCCAAGATGGGTGACGACTTGACCACCGAATGT
GTGCCAGAGAATGGCCGGGTTAACCTGTATTCCTCCTTGACTTCGGCCTC
TCCTTACTCGGCAGTGAGATCCAATGTGAACCAGAACTCTGCCCGCCTGC
TGGACGCCTCCATTGTGGATGGAGTGATCTACTGCCGTGTGCAAAGGGAT
GCAGTGACCAATGTGCAGGGACGCACTTTTGATCTTCGCAATGGCAAGTA
CCATCTGCTGGTGGCATCCGGCAGCAGCCTTAAGGAGAACAGCGTGGGCT
ACCACGACATTGGACGCCTGCCCTCGGCGCAACCGATCAATCTGGCGGAG
GTGCAAGACCTGAGTGGTTCTAGCAGACTGCTCATCCAGCTCCACGGTGC
CTTCATGATTGCCGCATGGATTGGAACCACCTCGCTGGGCATCATCTTTG
CGCGCTACTTCAAGCAGACGTGGGTGGGCAGCCAGAGCTGCGGCACGGAT
CAATGGTTCGCCTGGCATCGCCTCCTCATGGTCACCACCTGGTCGCTTAC
GGTGGCCGCTTACGTACTCATCTGGGTGGAGCTGAAGCAGGCTGTGTGGC
ATGCCCATTCGATAATCGGTCTGATCACGGTGATATTGTGCTTCATTCAA
CCCATTGGAGCTCTGTTCCGACCGGGACCCAATGACAAGAAGCGGCCATA
CTTCAACTGGGGTCATTGGCTGGGCGGTAACCTGGCCCATATTCTGGGAA
TTGTTACCATCTTCTTTTCTGTAAAACTACCAAAGGCCGAGCTGCCCGAG
TGGATGGACTGGATCCTGGTCAGCTTCGTGGTGGTGCATGTACTCGTCCA
CCTGATATTCTCCATTGGCGGCATGGCCTCGGAGCGTCATCTCAGCCAGC
GGGCGAACACTTTCCAAATGGGCGACATGTCCCATCATCAGCAGCACGCC
ATGCGGAATGGCATGAGCATGGAGCGGAAGATGGATGCCCCGTATGCGGG
CATGCGCAAGGGATTGCTCGGAGTTTACGGCGTGGTGCTGATTCTCTTCG
TGACGGTGCTGATCCTGTTGGTGGTGCTGGCGCCCATCGAACAATTCCTG
GGAAAGTCCTAGGCCCCCTAATTCGGATGTCCTGTAACCTGTCCCCTTCC
AATACTCGTGTCAGTTTTGTGTGCTCATTGTTTAACCCCTTCCGCCCACG
GCTCTGCCCTGCCCACCACCCAAATTCCCATCCTTTTTCCATTCAGCTTT
GTGTTGTTAAGTGTAATTAGGCGCATGTGTAACCTGGGGCGGAGCGTTCA
GTACATGTTATATAATTTATTATTAATAAAATAAAACAAGCCAACATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

LD47639.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8399-RA 2359 CG8399-RA 56..2355 1..2300 11500 100 Plus
CG8399.d 2374 CG8399.d 172..2370 102..2300 10995 100 Plus
CG8399.c 2379 CG8399.c 49..1867 1..1819 9080 99.9 Plus
CG8399.c 2379 CG8399.c 1889..2375 1814..2300 2435 100 Plus
CG8399.d 2374 CG8399.d 28..130 1..103 515 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11910334..11910956 1078..1700 3115 100 Plus
chr2R 21145070 chr2R 11909156..11909645 102..591 2450 100 Plus
chr2R 21145070 chr2R 11911541..11911896 1942..2297 1780 100 Plus
chr2R 21145070 chr2R 11909713..11910048 592..927 1680 100 Plus
chr2R 21145070 chr2R 11910106..11910258 926..1078 765 100 Plus
chr2R 21145070 chr2R 11911355..11911483 1814..1942 645 100 Plus
chr2R 21145070 chr2R 11911016..11911128 1701..1813 565 100 Plus
chr2R 21145070 chr2R 11905024..11905128 1..105 525 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16023065..16023687 1078..1700 3115 100 Plus
2R 25286936 2R 16021887..16022376 102..591 2450 100 Plus
2R 25286936 2R 16024272..16024630 1942..2300 1795 100 Plus
2R 25286936 2R 16022444..16022779 592..927 1680 100 Plus
2R 25286936 2R 16022837..16022989 926..1078 765 100 Plus
2R 25286936 2R 16024086..16024214 1814..1942 645 100 Plus
2R 25286936 2R 16023747..16023859 1701..1813 565 100 Plus
2R 25286936 2R 16017755..16017859 1..105 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16024264..16024886 1078..1700 3115 100 Plus
2R 25260384 2R 16023086..16023575 102..591 2450 100 Plus
2R 25260384 2R 16025471..16025829 1942..2300 1795 100 Plus
2R 25260384 2R 16023643..16023978 592..927 1680 100 Plus
2R 25260384 2R 16024036..16024188 926..1078 765 100 Plus
2R 25260384 2R 16025285..16025413 1814..1942 645 100 Plus
2R 25260384 2R 16024946..16025058 1701..1813 565 100 Plus
2R 25260384 2R 16018954..16019058 1..105 525 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:17:19 has no hits.

LD47639.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:18:15 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11905024..11905126 1..103 100 -> Plus
chr2R 11909158..11909645 104..591 100 -> Plus
chr2R 11909713..11910047 592..926 100 -> Plus
chr2R 11910107..11910258 927..1078 100 -> Plus
chr2R 11910335..11910956 1079..1700 100 -> Plus
chr2R 11911016..11911128 1701..1813 100 -> Plus
chr2R 11911355..11911483 1814..1942 100 -> Plus
chr2R 11911542..11911896 1943..2297 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:31:52 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 1..1944 119..2062 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:40 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 1..1944 119..2062 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:47:17 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 1..1944 119..2062 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:29:18 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 1..1944 119..2062 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:45 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 1..1944 119..2062 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:10:16 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 17..2313 1..2297 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:40 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 17..2313 1..2297 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:47:17 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 19..2315 1..2297 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:29:18 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 17..2313 1..2297 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:45 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
CG8399-RA 19..2315 1..2297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:15 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16017755..16017857 1..103 100 -> Plus
2R 16021889..16022376 104..591 100 -> Plus
2R 16022444..16022778 592..926 100 -> Plus
2R 16022838..16022989 927..1078 100 -> Plus
2R 16023066..16023687 1079..1700 100 -> Plus
2R 16023747..16023859 1701..1813 100 -> Plus
2R 16024086..16024214 1814..1942 100 -> Plus
2R 16024273..16024627 1943..2297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:15 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16017755..16017857 1..103 100 -> Plus
2R 16021889..16022376 104..591 100 -> Plus
2R 16022444..16022778 592..926 100 -> Plus
2R 16022838..16022989 927..1078 100 -> Plus
2R 16023066..16023687 1079..1700 100 -> Plus
2R 16023747..16023859 1701..1813 100 -> Plus
2R 16024086..16024214 1814..1942 100 -> Plus
2R 16024273..16024627 1943..2297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:18:15 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16017755..16017857 1..103 100 -> Plus
2R 16021889..16022376 104..591 100 -> Plus
2R 16022444..16022778 592..926 100 -> Plus
2R 16022838..16022989 927..1078 100 -> Plus
2R 16023066..16023687 1079..1700 100 -> Plus
2R 16023747..16023859 1701..1813 100 -> Plus
2R 16024086..16024214 1814..1942 100 -> Plus
2R 16024273..16024627 1943..2297 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:47:17 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11905260..11905362 1..103 100 -> Plus
arm_2R 11909394..11909881 104..591 100 -> Plus
arm_2R 11909949..11910283 592..926 100 -> Plus
arm_2R 11910343..11910494 927..1078 100 -> Plus
arm_2R 11910571..11911192 1079..1700 100 -> Plus
arm_2R 11911252..11911364 1701..1813 100 -> Plus
arm_2R 11911591..11911719 1814..1942 100 -> Plus
arm_2R 11911778..11912132 1943..2297 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:01:55 Download gff for LD47639.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16023088..16023575 104..591 100 -> Plus
2R 16023643..16023977 592..926 100 -> Plus
2R 16024037..16024188 927..1078 100 -> Plus
2R 16024265..16024886 1079..1700 100 -> Plus
2R 16024946..16025058 1701..1813 100 -> Plus
2R 16025285..16025413 1814..1942 100 -> Plus
2R 16025472..16025826 1943..2297 100   Plus
2R 16018954..16019056 1..103 100 -> Plus

LD47639.pep Sequence

Translation from 118 to 2061

> LD47639.pep
MMQALTMRSWLATLVTALLAVAIWPDPGQSLPQGAPETVCDTMLPFHSGG
SVLPQNSVSPFSVETSSSTLGQGQTLRVDLTGVPAGLSFGGYMIQARNRN
PPHQIIGQFGPARDGTIKLMNCENSVNNSATHSNAGPKQQVILEWQSPVD
FLGQVVFNATIAQSYNEFWVGVPSQPVQIVRRDLSAAPPLPTQSPSAPAG
TTRAPYVPPSYVAPNNVVAVSSDPIYNGCGQSKNCFGFPDGCVATKSCTS
ITVVTVRGDVFEFEIQSGKGTNAAYVAVGLSDDAKMGDDLTTECVPENGR
VNLYSSLTSASPYSAVRSNVNQNSARLLDASIVDGVIYCRVQRDAVTNVQ
GRTFDLRNGKYHLLVASGSSLKENSVGYHDIGRLPSAQPINLAEVQDLSG
SSRLLIQLHGAFMIAAWIGTTSLGIIFARYFKQTWVGSQSCGTDQWFAWH
RLLMVTTWSLTVAAYVLIWVELKQAVWHAHSIIGLITVILCFIQPIGALF
RPGPNDKKRPYFNWGHWLGGNLAHILGIVTIFFSVKLPKAELPEWMDWIL
VSFVVVHVLVHLIFSIGGMASERHLSQRANTFQMGDMSHHQQHAMRNGMS
MERKMDAPYAGMRKGLLGVYGVVLILFVTVLILLVVLAPIEQFLGKS*

LD47639.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11285-PA 646 GF11285-PA 1..646 1..647 2899 88.3 Plus
Dana\GF14493-PA 159 GF14493-PA 6..158 14..179 159 29 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20560-PA 647 GG20560-PA 1..647 1..647 3384 98 Plus
Dere\GG10152-PA 159 GG10152-PA 6..158 14..179 150 27.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22061-PA 646 GH22061-PA 27..646 29..645 2697 81.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8399-PA 647 CG8399-PA 1..647 1..647 3391 100 Plus
CG8399-PB 656 CG8399-PB 1..656 1..647 3371 98.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19146-PA 655 GI19146-PA 15..654 8..644 2754 80.2 Plus
Dmoj\GI17382-PA 159 GI17382-PA 6..158 14..179 149 29.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17209-PA 655 GL17209-PA 14..655 10..647 2787 84.2 Plus
Dper\GL21051-PA 159 GL21051-PA 6..158 14..179 151 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21047-PB 656 GA21047-PB 14..656 10..647 2772 84.2 Plus
Dpse\GA21047-PA 656 GA21047-PA 14..656 10..647 2772 84.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21652-PA 467 GM21652-PA 140..467 320..647 1720 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11152-PA 647 GD11152-PA 1..647 1..647 3397 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22279-PA 637 GJ22279-PA 19..636 29..644 2751 83.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12452-PA 329 GK12452-PA 23..319 28..320 974 62.3 Plus
Dwil\GK12451-PA 215 GK12451-PA 2..189 404..591 773 73.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11746-PA 648 GE11746-PA 1..648 1..647 3385 97.8 Plus

LD47639.hyp Sequence

Translation from 118 to 2061

> LD47639.hyp
MMQALTMRSWLATLVTALLAVAIWPDPGQSLPQGAPETVCDTMLPFHSGG
SVLPQNSVSPFSVETSSSTLGQGQTLRVDLTGVPAGLSFGGYMIQARNRN
PPHQIIGQFGPARDGTIKLMNCENSVNNSATHSNAGPKQQVILEWQSPVD
FLGQVVFNATIAQSYNEFWVGVPSQPVQIVRRDLSAAPPLPTQSPSAPAG
TTRAPYVPPSYVAPNNVVAVSSDPIYNGCGQSKNCFGFPDGCVATKSCTS
ITVVTVRGDVFEFEIQSGKGTNAAYVAVGLSDDAKMGDDLTTECVPENGR
VNLYSSLTSASPYSAVRSNVNQNSARLLDASIVDGVIYCRVQRDAVTNVQ
GRTFDLRNGKYHLLVASGSSLKENSVGYHDIGRLPSAQPINLAEVQDLSG
SSRLLIQLHGAFMIAAWIGTTSLGIIFARYFKQTWVGSQSCGTDQWFAWH
RLLMVTTWSLTVAAYVLIWVELKQAVWHAHSIIGLITVILCFIQPIGALF
RPGPNDKKRPYFNWGHWLGGNLAHILGIVTIFFSVKLPKAELPEWMDWIL
VSFVVVHVLVHLIFSIGGMASERHLSQRANTFQMGDMSHHQQHAMRNGMS
MERKMDAPYAGMRKGLLGVYGVVLILFVTVLILLVVLAPIEQFLGKS*

LD47639.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8399-PA 647 CG8399-PA 1..647 1..647 3391 100 Plus
CG8399-PB 656 CG8399-PB 1..656 1..647 3371 98.6 Plus