Clone LD47671 Report

Search the DGRC for LD47671

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:476
Well:71
Vector:pOT2
Associated Gene/TranscriptCG9536-RA
Protein status:LD47671.pep: gold
Preliminary Size:1989
Sequenced Size:1908

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9536 2001-01-01 Release 2 assignment
CG9536 2003-01-01 Sim4 clustering to Release 3
CG9536 2003-01-14 Blastp of sequenced clone
CG9536 2008-04-29 Release 5.5 accounting
CG9536 2008-08-15 Release 5.9 accounting
CG9536 2008-12-18 5.12 accounting

Clone Sequence Records

LD47671.complete Sequence

1908 bp (1908 high quality bases) assembled on 2003-01-14

GenBank Submission: AY075428

> LD47671.complete
TGAAGCAAATTCGTAAATATTAGCAAATGAACCACTTTAAGGCCCCTCGA
ACGTGTTGAGTTGCGAGGCAGACAAGCACCGCAGCGCATTCAAGACCACC
CGGTTCCAGTCCGCCGCCCAGGAGCTGCGAGGCCAACGAAAAACGCGTGC
GAACACCAGGAGAAGCGATCGGTGCCATGTCAGCTCAACTGGCCAGAAAC
TGGCCGTACATCTGGCAACAGCTCAATGCTCTGCTGCACAACACCTCGCC
GGTCATAACGCTCATCTGCGTGGTGACCACGTTCGGCTACCTGCTATCCT
TCTCGGAGACGGCCATCCTGCTGCTCAGCGTCACTCCCGGTTACATCCTG
CCCAATGGCAAGTTCTGGATATGGACCGCCTTCACGTTCTGCTTCATCGA
GCTGCACTGGTGGGAGGTGGCCGTCGACGTGGTCACCGTCGGCCTGTGCG
GCAAGATGCTGGAACCGCTCTGGGGCCAGCTGGAGATGTTCAAGTTCTTC
GCGCTGAGCAACTTTGGCGTCTCGCTGCTGACCACTGTCTACTATTTGTT
CTACTACATGGTCACCAAGAACCCGACCATTCTCTTCGAGGTGCACATTC
ACGGCCTGGCCGGATACGTGGCTGGCATCTGCGTAGCCGTACGCCAGATA
ATGCCCGATCACCTGATCTTCAAGACGCGCTACGGACGTCTGACCAATAG
GAACGTTCCCCTCACGGTGCTCATCATGGCCATCATACTGTGGGCCATTG
GCCTGCTAGATGGCACTTATCCGGCTATGTTCGCCTCCGGATCGCTGGTT
TCTTGGATCTATCTCCGCTTCTATCAACACCATCCCAATGGGCGTGGCGA
CAGCTCGGAGAGCTTCACGTTCGTCAGCTTCTTCCCAAACGTATCACAGC
CGTTTATCAGCGTATTGGTTAATCCCATTTACAATTGCTGTTTGCGGGCG
GGCGTGGTCAAGACGCCCACGCCGCTGCGGACGATATCTACGGCCAGCCT
GACGTCGGTATCGGTGCAAATGCCGGGAGTGGATCCGCATGACATTGAGA
GAAGGCGACAAATTGCCTTGAAGGCGCTAAGTGAGCGCCTAAAGGCCACG
GACTCCAGCCGCCACGCCCAGCTGCCCAAGTCGTTCCCGCAGCAGCAGCA
GCTGCAACATCATCATCACCAGCACGCGCCGCACCAGCAGCAAAAGCATC
ACAGTCACGGCACTGGCCACAGTCACAGCCATGGAGCGGGCCATAGTCAT
AGTCATGGAGCGGGACACAGTCATGGGCCCGGTCCTGCTCAGATGCCGCA
GCCCGACTTCCTGAAGTCCACCGGCAGCGCCAGCCAGCTGCCCATCACAA
CGTCGCGGGCGGAGCCGCGCATGATCAGCACCATGAGCCCGATTGCAATA
CCAATGCCGGCGCCACCGCCCAAGGAGGGTAATGTTCCGGGTCAAGGTGC
TGAATCCTCCTCCAGCGGAGGTGTCGAGGCGACCCTTATTAACCTGGACG
ACGTACCAACCACGTCTTCGATGGCCTAGACAGTGATTCTATGCATATAT
TAATGAATTTTTGATATTTAAACGAATGATCTAATGATTTACGCCCATGT
TTTGTATGATTCTGCATCAAGTACGTACCCCCCATCAGTGTTCCCATTTT
GTAATTACCGTTCGTGTGTTTCGTAGTGTCCTGTAGACTTACGCTTGCTT
GCTGCGCACACCGCCGGCCATGCTGCTAGGAGCGGCGGAGTAATATGAGA
TCAGCCTAAACCAATACCTTCCGGGCGTTATGAAAATACTAGAGCCCTTA
CATAGATGCATACTTTCTGTTGTAGTCCTTACATGTAATTGAAAATGATG
CTTTATTTAGTTAATAACTGTAAATATATTTAAAACTCCGAAAAAAAAAA
AAAAAAAA

LD47671.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-RA 2140 CG9536-RA 162..2055 1..1894 9470 100 Plus
CG9536.a 2084 CG9536.a 162..1781 1..1620 8100 100 Plus
CG9536.a 2084 CG9536.a 1782..1999 1677..1894 1090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6473411..6474244 1890..1057 4170 100 Minus
chr2L 23010047 chr2L 6475194..6475894 701..1 3505 100 Minus
chr2L 23010047 chr2L 6474419..6474777 1057..699 1795 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6474434..6475271 1894..1057 4190 100 Minus
2L 23513712 2L 6476221..6476921 701..1 3505 100 Minus
2L 23513712 2L 6475446..6475804 1057..699 1795 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6474434..6475271 1894..1057 4190 100 Minus
2L 23513712 2L 6476221..6476921 701..1 3505 100 Minus
2L 23513712 2L 6475446..6475804 1057..699 1795 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:47:49 has no hits.

LD47671.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:48:51 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6474419..6474775 701..1057 100 <- Minus
chr2L 6473411..6474071 1230..1890 100 == Minus
chr2L 6474163..6474243 1058..1138 100 <- Minus
chr2L 6475195..6475894 1..700 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:00 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 1..1353 177..1529 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:50 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RB 1..1353 177..1529 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:37 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 1..1353 177..1529 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:42 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 1..1353 177..1529 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:21:22 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 1..1353 177..1529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:43 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 52..1941 1..1890 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:50 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 52..1941 1..1890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:37 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 55..1944 1..1890 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:42 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 52..1941 1..1890 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:21:22 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
CG9536-RA 55..1944 1..1890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:51 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6474438..6475270 1058..1890 100 <- Minus
2L 6475446..6475802 701..1057 100 <- Minus
2L 6476222..6476921 1..700 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:51 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6474438..6475270 1058..1890 100 <- Minus
2L 6475446..6475802 701..1057 100 <- Minus
2L 6476222..6476921 1..700 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:51 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6474438..6475270 1058..1890 100 <- Minus
2L 6475446..6475802 701..1057 100 <- Minus
2L 6476222..6476921 1..700 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:37 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6474438..6475270 1058..1890 100 <- Minus
arm_2L 6475446..6475802 701..1057 100 <- Minus
arm_2L 6476222..6476921 1..700 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:00 Download gff for LD47671.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6474438..6475270 1058..1890 100 <- Minus
2L 6475446..6475802 701..1057 100 <- Minus
2L 6476222..6476921 1..700 100   Minus

LD47671.hyp Sequence

Translation from 176 to 1528

> LD47671.hyp
MSAQLARNWPYIWQQLNALLHNTSPVITLICVVTTFGYLLSFSETAILLL
SVTPGYILPNGKFWIWTAFTFCFIELHWWEVAVDVVTVGLCGKMLEPLWG
QLEMFKFFALSNFGVSLLTTVYYLFYYMVTKNPTILFEVHIHGLAGYVAG
ICVAVRQIMPDHLIFKTRYGRLTNRNVPLTVLIMAIILWAIGLLDGTYPA
MFASGSLVSWIYLRFYQHHPNGRGDSSESFTFVSFFPNVSQPFISVLVNP
IYNCCLRAGVVKTPTPLRTISTASLTSVSVQMPGVDPHDIERRRQIALKA
LSERLKATDSSRHAQLPKSFPQQQQLQHHHHQHAPHQQQKHHSHGTGHSH
SHGAGHSHSHGAGHSHGPGPAQMPQPDFLKSTGSASQLPITTSRAEPRMI
STMSPIAIPMPAPPPKEGNVPGQGAESSSSGGVEATLINLDDVPTTSSMA
*

LD47671.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-PB 450 CG9536-PB 1..450 1..450 2403 100 Plus
CG9536-PA 450 CG9536-PA 1..450 1..450 2403 100 Plus

LD47671.pep Sequence

Translation from 176 to 1528

> LD47671.pep
MSAQLARNWPYIWQQLNALLHNTSPVITLICVVTTFGYLLSFSETAILLL
SVTPGYILPNGKFWIWTAFTFCFIELHWWEVAVDVVTVGLCGKMLEPLWG
QLEMFKFFALSNFGVSLLTTVYYLFYYMVTKNPTILFEVHIHGLAGYVAG
ICVAVRQIMPDHLIFKTRYGRLTNRNVPLTVLIMAIILWAIGLLDGTYPA
MFASGSLVSWIYLRFYQHHPNGRGDSSESFTFVSFFPNVSQPFISVLVNP
IYNCCLRAGVVKTPTPLRTISTASLTSVSVQMPGVDPHDIERRRQIALKA
LSERLKATDSSRHAQLPKSFPQQQQLQHHHHQHAPHQQQKHHSHGTGHSH
SHGAGHSHSHGAGHSHGPGPAQMPQPDFLKSTGSASQLPITTSRAEPRMI
STMSPIAIPMPAPPPKEGNVPGQGAESSSSGGVEATLINLDDVPTTSSMA
*

LD47671.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23668-PA 449 GF23668-PA 1..449 1..450 1832 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23619-PA 447 GG23619-PA 1..447 1..450 2311 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13250-PA 457 GH13250-PA 1..406 1..404 1632 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9536-PB 450 CG9536-PB 1..450 1..450 2403 100 Plus
CG9536-PA 450 CG9536-PA 1..450 1..450 2403 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17289-PA 433 GI17289-PA 1..404 1..404 1644 81.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26104-PA 449 GL26104-PA 1..449 1..450 1904 84.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21862-PA 449 GA21862-PA 1..449 1..450 1874 84.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17935-PA 450 GM17935-PA 1..450 1..450 2386 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22573-PA 450 GD22573-PA 1..450 1..450 2386 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17899-PA 443 GJ17899-PA 1..408 1..404 1763 86.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18693-PA 436 GK18693-PA 1..433 1..448 1639 80.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18438-PA 447 GE18438-PA 1..447 1..450 2303 96.7 Plus