BDGP Sequence Production Resources |
Search the DGRC for LD47671
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 476 |
Well: | 71 |
Vector: | pOT2 |
Associated Gene/Transcript | CG9536-RA |
Protein status: | LD47671.pep: gold |
Preliminary Size: | 1989 |
Sequenced Size: | 1908 |
Gene | Date | Evidence |
---|---|---|
CG9536 | 2001-01-01 | Release 2 assignment |
CG9536 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9536 | 2003-01-14 | Blastp of sequenced clone |
CG9536 | 2008-04-29 | Release 5.5 accounting |
CG9536 | 2008-08-15 | Release 5.9 accounting |
CG9536 | 2008-12-18 | 5.12 accounting |
1908 bp (1908 high quality bases) assembled on 2003-01-14
GenBank Submission: AY075428
> LD47671.complete TGAAGCAAATTCGTAAATATTAGCAAATGAACCACTTTAAGGCCCCTCGA ACGTGTTGAGTTGCGAGGCAGACAAGCACCGCAGCGCATTCAAGACCACC CGGTTCCAGTCCGCCGCCCAGGAGCTGCGAGGCCAACGAAAAACGCGTGC GAACACCAGGAGAAGCGATCGGTGCCATGTCAGCTCAACTGGCCAGAAAC TGGCCGTACATCTGGCAACAGCTCAATGCTCTGCTGCACAACACCTCGCC GGTCATAACGCTCATCTGCGTGGTGACCACGTTCGGCTACCTGCTATCCT TCTCGGAGACGGCCATCCTGCTGCTCAGCGTCACTCCCGGTTACATCCTG CCCAATGGCAAGTTCTGGATATGGACCGCCTTCACGTTCTGCTTCATCGA GCTGCACTGGTGGGAGGTGGCCGTCGACGTGGTCACCGTCGGCCTGTGCG GCAAGATGCTGGAACCGCTCTGGGGCCAGCTGGAGATGTTCAAGTTCTTC GCGCTGAGCAACTTTGGCGTCTCGCTGCTGACCACTGTCTACTATTTGTT CTACTACATGGTCACCAAGAACCCGACCATTCTCTTCGAGGTGCACATTC ACGGCCTGGCCGGATACGTGGCTGGCATCTGCGTAGCCGTACGCCAGATA ATGCCCGATCACCTGATCTTCAAGACGCGCTACGGACGTCTGACCAATAG GAACGTTCCCCTCACGGTGCTCATCATGGCCATCATACTGTGGGCCATTG GCCTGCTAGATGGCACTTATCCGGCTATGTTCGCCTCCGGATCGCTGGTT TCTTGGATCTATCTCCGCTTCTATCAACACCATCCCAATGGGCGTGGCGA CAGCTCGGAGAGCTTCACGTTCGTCAGCTTCTTCCCAAACGTATCACAGC CGTTTATCAGCGTATTGGTTAATCCCATTTACAATTGCTGTTTGCGGGCG GGCGTGGTCAAGACGCCCACGCCGCTGCGGACGATATCTACGGCCAGCCT GACGTCGGTATCGGTGCAAATGCCGGGAGTGGATCCGCATGACATTGAGA GAAGGCGACAAATTGCCTTGAAGGCGCTAAGTGAGCGCCTAAAGGCCACG GACTCCAGCCGCCACGCCCAGCTGCCCAAGTCGTTCCCGCAGCAGCAGCA GCTGCAACATCATCATCACCAGCACGCGCCGCACCAGCAGCAAAAGCATC ACAGTCACGGCACTGGCCACAGTCACAGCCATGGAGCGGGCCATAGTCAT AGTCATGGAGCGGGACACAGTCATGGGCCCGGTCCTGCTCAGATGCCGCA GCCCGACTTCCTGAAGTCCACCGGCAGCGCCAGCCAGCTGCCCATCACAA CGTCGCGGGCGGAGCCGCGCATGATCAGCACCATGAGCCCGATTGCAATA CCAATGCCGGCGCCACCGCCCAAGGAGGGTAATGTTCCGGGTCAAGGTGC TGAATCCTCCTCCAGCGGAGGTGTCGAGGCGACCCTTATTAACCTGGACG ACGTACCAACCACGTCTTCGATGGCCTAGACAGTGATTCTATGCATATAT TAATGAATTTTTGATATTTAAACGAATGATCTAATGATTTACGCCCATGT TTTGTATGATTCTGCATCAAGTACGTACCCCCCATCAGTGTTCCCATTTT GTAATTACCGTTCGTGTGTTTCGTAGTGTCCTGTAGACTTACGCTTGCTT GCTGCGCACACCGCCGGCCATGCTGCTAGGAGCGGCGGAGTAATATGAGA TCAGCCTAAACCAATACCTTCCGGGCGTTATGAAAATACTAGAGCCCTTA CATAGATGCATACTTTCTGTTGTAGTCCTTACATGTAATTGAAAATGATG CTTTATTTAGTTAATAACTGTAAATATATTTAAAACTCCGAAAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6473411..6474244 | 1890..1057 | 4170 | 100 | Minus |
chr2L | 23010047 | chr2L | 6475194..6475894 | 701..1 | 3505 | 100 | Minus |
chr2L | 23010047 | chr2L | 6474419..6474777 | 1057..699 | 1795 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6474434..6475271 | 1894..1057 | 4190 | 100 | Minus |
2L | 23513712 | 2L | 6476221..6476921 | 701..1 | 3505 | 100 | Minus |
2L | 23513712 | 2L | 6475446..6475804 | 1057..699 | 1795 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6474434..6475271 | 1894..1057 | 4190 | 100 | Minus |
2L | 23513712 | 2L | 6476221..6476921 | 701..1 | 3505 | 100 | Minus |
2L | 23513712 | 2L | 6475446..6475804 | 1057..699 | 1795 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6474419..6474775 | 701..1057 | 100 | <- | Minus |
chr2L | 6473411..6474071 | 1230..1890 | 100 | == | Minus |
chr2L | 6474163..6474243 | 1058..1138 | 100 | <- | Minus |
chr2L | 6475195..6475894 | 1..700 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RA | 1..1353 | 177..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RB | 1..1353 | 177..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RA | 1..1353 | 177..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RA | 1..1353 | 177..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RA | 1..1353 | 177..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RA | 52..1941 | 1..1890 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RA | 52..1941 | 1..1890 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RA | 55..1944 | 1..1890 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RA | 52..1941 | 1..1890 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9536-RA | 55..1944 | 1..1890 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6474438..6475270 | 1058..1890 | 100 | <- | Minus |
2L | 6475446..6475802 | 701..1057 | 100 | <- | Minus |
2L | 6476222..6476921 | 1..700 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6474438..6475270 | 1058..1890 | 100 | <- | Minus |
2L | 6475446..6475802 | 701..1057 | 100 | <- | Minus |
2L | 6476222..6476921 | 1..700 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6474438..6475270 | 1058..1890 | 100 | <- | Minus |
2L | 6475446..6475802 | 701..1057 | 100 | <- | Minus |
2L | 6476222..6476921 | 1..700 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6474438..6475270 | 1058..1890 | 100 | <- | Minus |
arm_2L | 6475446..6475802 | 701..1057 | 100 | <- | Minus |
arm_2L | 6476222..6476921 | 1..700 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6474438..6475270 | 1058..1890 | 100 | <- | Minus |
2L | 6475446..6475802 | 701..1057 | 100 | <- | Minus |
2L | 6476222..6476921 | 1..700 | 100 | Minus |
Translation from 176 to 1528
> LD47671.hyp MSAQLARNWPYIWQQLNALLHNTSPVITLICVVTTFGYLLSFSETAILLL SVTPGYILPNGKFWIWTAFTFCFIELHWWEVAVDVVTVGLCGKMLEPLWG QLEMFKFFALSNFGVSLLTTVYYLFYYMVTKNPTILFEVHIHGLAGYVAG ICVAVRQIMPDHLIFKTRYGRLTNRNVPLTVLIMAIILWAIGLLDGTYPA MFASGSLVSWIYLRFYQHHPNGRGDSSESFTFVSFFPNVSQPFISVLVNP IYNCCLRAGVVKTPTPLRTISTASLTSVSVQMPGVDPHDIERRRQIALKA LSERLKATDSSRHAQLPKSFPQQQQLQHHHHQHAPHQQQKHHSHGTGHSH SHGAGHSHSHGAGHSHGPGPAQMPQPDFLKSTGSASQLPITTSRAEPRMI STMSPIAIPMPAPPPKEGNVPGQGAESSSSGGVEATLINLDDVPTTSSMA *
Translation from 176 to 1528
> LD47671.pep MSAQLARNWPYIWQQLNALLHNTSPVITLICVVTTFGYLLSFSETAILLL SVTPGYILPNGKFWIWTAFTFCFIELHWWEVAVDVVTVGLCGKMLEPLWG QLEMFKFFALSNFGVSLLTTVYYLFYYMVTKNPTILFEVHIHGLAGYVAG ICVAVRQIMPDHLIFKTRYGRLTNRNVPLTVLIMAIILWAIGLLDGTYPA MFASGSLVSWIYLRFYQHHPNGRGDSSESFTFVSFFPNVSQPFISVLVNP IYNCCLRAGVVKTPTPLRTISTASLTSVSVQMPGVDPHDIERRRQIALKA LSERLKATDSSRHAQLPKSFPQQQQLQHHHHQHAPHQQQKHHSHGTGHSH SHGAGHSHSHGAGHSHGPGPAQMPQPDFLKSTGSASQLPITTSRAEPRMI STMSPIAIPMPAPPPKEGNVPGQGAESSSSGGVEATLINLDDVPTTSSMA *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23668-PA | 449 | GF23668-PA | 1..449 | 1..450 | 1832 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23619-PA | 447 | GG23619-PA | 1..447 | 1..450 | 2311 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13250-PA | 457 | GH13250-PA | 1..406 | 1..404 | 1632 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9536-PB | 450 | CG9536-PB | 1..450 | 1..450 | 2403 | 100 | Plus |
CG9536-PA | 450 | CG9536-PA | 1..450 | 1..450 | 2403 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17289-PA | 433 | GI17289-PA | 1..404 | 1..404 | 1644 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26104-PA | 449 | GL26104-PA | 1..449 | 1..450 | 1904 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21862-PA | 449 | GA21862-PA | 1..449 | 1..450 | 1874 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17935-PA | 450 | GM17935-PA | 1..450 | 1..450 | 2386 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22573-PA | 450 | GD22573-PA | 1..450 | 1..450 | 2386 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17899-PA | 443 | GJ17899-PA | 1..408 | 1..404 | 1763 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18693-PA | 436 | GK18693-PA | 1..433 | 1..448 | 1639 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18438-PA | 447 | GE18438-PA | 1..447 | 1..450 | 2303 | 96.7 | Plus |