Clone LD47677 Report

Search the DGRC for LD47677

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:476
Well:77
Vector:pOT2
Associated Gene/TranscriptCG11695-RB
Protein status:LD47677.pep: gold
Sequenced Size:1815

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11695 2008-04-29 Release 5.5 accounting
CG11695 2008-04-29 Picked prior to 5.5
CG11695 2008-08-15 Release 5.9 accounting
CG11695 2008-12-18 5.12 accounting

Clone Sequence Records

LD47677.complete Sequence

1815 bp assembled on 2007-11-15

GenBank Submission: BT031271

> LD47677.complete
CGACGTCTTAAACTGAATTTGCGAGGCAATTAATTGAATTAATTGCTTTT
CCTACAGCTGTAGTGCAATGATATGCCGCCTGTGCCTGGACGATGCTGAG
CACAGTGTGCCAATCTTTGACCAGGATGACTCCGGCGATCAGCCAGTGCC
CTCCAATCTAGCGGAGCTAATTGAGAAACACCTGCAGTTGGTGCTCCTGC
CCAACGATGGGGTGTCCAAGAGCCTCTGCACCCAGTGCTGGCAGCAGTTG
GCCGACTTCGAGCAGTTCTGCGCCATGGTGATGAAGAAACAATTGGGCCT
GCAGCAACTGAAGATGGAGCCGTTCTCCGAGGACGAGGATGCGGACACTA
AGGCGCAGATCCTGTGCGAACCGGAGATCGATGTGAGTCCCGCGGCCGCC
GACAACGAAGAGTGCAACGAGATCGACGGCGATGCCAGCAGCAACAGCAG
AAGCAGTAGCATTCGCACCACATCGCTACGAGAAATGCGCCTGCCGTCGC
CCATTAGACGCCGTATGCGTCTACCCCGGGCAGTCACAGCACCCAAAACT
CAGGCTGTCAAGGCCAAGGCCAGGACGAAGACCCACAAGGCCGAGGCGGA
CGAGGATGAGGATGCCGAAGGCGAGGGCGATCCAGAGAGCCGCAGCAGCA
ATAGCCGCGAAATGGACAGCTATATCGCTCTGCACGGTCGTTTGGAGTGC
TGCATTTGCGGCGGCGACGAACAGTTTCCCAATTTCGCCGAGATGAAGCG
GCACTTCCGGAATCATCACCAGTCCCTCGGTTATGTGGTCTGCTGCCAGC
GGCGCTACAAGAAGCGTGCCCTCTACGTGGACCACCTGCACATGCACAAC
GATCCGAATTACTTTAGGTACTTGACCAGCCCAGGCAATTGATTGAATCC
CCCTACTAATGAATGAACTGTGCAGGTGCAAGATCTGCTCCAAGCAACTG
GTCAGCCGGATTAGCTACGATGTACACATGCTACGCTTCCATCCCAACAA
GGACGACCTAAGCTTCGCGTGTGATCAGTGCTCAAAGCGGTTCTCCAAGC
AGTTCCTTCTCACCATTCACTCCAGGGTGCACCAGCAGGAGCGCAATGAG
CAGTGCAAGCACTGCGACAGATCCTTTCGCACCGCCGTTGACCTGCGGCT
GCATATGCGACGCACCCATGACCCCGCCTTCGTACCCTTCATCTGCGACT
CGTGCGGTGCCAAGTTCAAGACGAAACAGAACCTGCTAGTGCACAAGCGG
ACTGTGCATCGCGAGGGCTCCCAGCTGCCCGAGGTACAGTGCCAGGAGTG
CCAGGTGTGGCTGTCCGACGAGAACAGTTTGCGCAAGCACATGTACATGC
ATCTGGATGCCGCCTCGCTGCGTCAGTGGAAGTGCGAGCAGTGCGGCCTG
GAGAAGGGTTCGCGGGCCAAGCTGGCGGCCCACATACGCTATCATCATCC
GAAGGAATACCACAAGTGCACGCACTGCGCCAAGGAGTTCAAGAGCAGTC
GCAGCCTCGAGGAGCACACAGCCACGCATACCGGCCAGGATTTGTACGAG
TGCGCCTTCTGCGAGCGCACCTTCAAAAACTCGGGGAACATGCACAAGCA
CCGCCGCCAGATGCACGCCGCCCAGGTGGCCGCCCTGCAGCAGCAGAAGA
AGGTGCCGCCCAGCAAGCGCAAGGACAAAGGTGACCTGCTGCTCGACGTC
CTGGCCGCTGGAGGCAAGGATATGAGCCACGTCATGGGTGCGGGCGACAT
GAATGACTGATTGATTCTAAAAACCAAATAAACTAGATTGGAATGACAAA
AAAAAAAAAAAAAAA

LD47677.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11695-RB 1816 CG11695-RB 16..1813 1..1798 8990 100 Plus
CG11695-RA 1848 CG11695-RA 968..1842 924..1798 4375 100 Plus
CG11695-RA 1848 CG11695-RA 103..971 1..869 4345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11468343..11469273 193..1123 4655 100 Plus
chrX 22417052 chrX 11469332..11470005 1124..1797 3370 100 Plus
chrX 22417052 chrX 11468085..11468277 1..193 965 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11577144..11578074 193..1123 4655 100 Plus
X 23542271 X 11578133..11578814 1124..1805 3380 99.7 Plus
X 23542271 X 11576886..11577078 1..193 965 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11585242..11586172 193..1123 4655 100 Plus
X 23527363 X 11586231..11586912 1124..1805 3380 99.7 Plus
X 23527363 X 11584984..11585176 1..193 965 100 Plus
X 23527363 X 11581956..11582014 68..126 160 84.7 Plus
Blast to na_te.dros performed on 2019-03-15 23:13:05 has no hits.

LD47677.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:13:48 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11468085..11468277 1..193 100 -> Plus
chrX 11468344..11469273 194..1123 100 -> Plus
chrX 11469332..11470005 1124..1797 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:03 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RA 1..798 68..865 100 == Plus
CG11695-RA 799..1635 924..1760 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:10 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RA 1..798 68..865 100 == Plus
CG11695-RA 799..1635 924..1760 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:32:26 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RA 1..798 68..865 100 == Plus
CG11695-RA 799..1635 924..1760 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:28 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RA 1..798 68..865 100 == Plus
CG11695-RA 799..1635 924..1760 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:54 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RA 1..798 68..865 100 == Plus
CG11695-RA 799..1635 924..1760 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:58:00 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RA 4..868 1..865 100 == Plus
CG11695-RA 869..1742 924..1797 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:09 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RB 4..1800 1..1797 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:32:26 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RB 4..1800 1..1797 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:28 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RA 4..868 1..865 100 == Plus
CG11695-RA 869..1742 924..1797 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:54 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
CG11695-RB 4..1800 1..1797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:13:48 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
X 11576886..11577078 1..193 100 -> Plus
X 11577145..11578074 194..1123 100 -> Plus
X 11578133..11578806 1124..1797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:13:48 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
X 11576886..11577078 1..193 100 -> Plus
X 11577145..11578074 194..1123 100 -> Plus
X 11578133..11578806 1124..1797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:13:48 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
X 11576886..11577078 1..193 100 -> Plus
X 11577145..11578074 194..1123 100 -> Plus
X 11578133..11578806 1124..1797 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:32:26 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11470919..11471111 1..193 100 -> Plus
arm_X 11471178..11472107 194..1123 100 -> Plus
arm_X 11472166..11472839 1124..1797 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:17 Download gff for LD47677.complete
Subject Subject Range Query Range Percent Splice Strand
X 11585243..11586172 194..1123 100 -> Plus
X 11586231..11586904 1124..1797 100   Plus
X 11584984..11585176 1..193 100 -> Plus

LD47677.pep Sequence

Translation from 67 to 891

> LD47677.pep
MICRLCLDDAEHSVPIFDQDDSGDQPVPSNLAELIEKHLQLVLLPNDGVS
KSLCTQCWQQLADFEQFCAMVMKKQLGLQQLKMEPFSEDEDADTKAQILC
EPEIDVSPAAADNEECNEIDGDASSNSRSSSIRTTSLREMRLPSPIRRRM
RLPRAVTAPKTQAVKAKARTKTHKAEADEDEDAEGEGDPESRSSNSREMD
SYIALHGRLECCICGGDEQFPNFAEMKRHFRNHHQSLGYVVCCQRRYKKR
ALYVDHLHMHNDPNYFRYLTSPGN*

LD47677.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20322-PA 552 GF20322-PA 1..264 1..267 956 72.4 Plus
Dana\GF20321-PA 653 GF20321-PA 1..137 1..118 284 47.9 Plus
Dana\GF20321-PA 653 GF20321-PA 243..344 158..266 241 46.8 Plus
Dana\GF11111-PA 588 GF11111-PA 1..299 1..267 200 25.8 Plus
Dana\GF19338-PA 573 GF19338-PA 1..318 1..266 190 25.1 Plus
Dana\GF13327-PA 564 GF13327-PA 220..289 196..267 150 40.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18430-PA 543 GG18430-PA 1..266 1..267 1169 90.7 Plus
Dere\GG18429-PA 663 GG18429-PA 1..137 1..110 275 46.7 Plus
Dere\GG18429-PA 663 GG18429-PA 247..354 153..266 233 46.5 Plus
Dere\GG21919-PA 577 GG21919-PA 1..289 1..267 204 25.3 Plus
Dere\GG20813-PA 570 GG20813-PA 3..297 2..267 166 25.2 Plus
Dere\GG18358-PA 581 GG18358-PA 1..79 1..80 153 41.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12827-PA 672 GH12827-PA 145..355 62..266 241 32.1 Plus
Dgri\GH20040-PA 609 GH20040-PA 1..296 1..267 216 25.2 Plus
Dgri\GH12827-PA 672 GH12827-PA 1..216 1..199 203 36.1 Plus
Dgri\GH19827-PA 588 GH19827-PA 3..300 1..267 171 22.2 Plus
Dgri\GH12712-PA 616 GH12712-PA 1..79 1..80 149 39 Plus
Dgri\GH24154-PA 656 GH24154-PA 1..104 1..93 147 38.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11695-PB 274 CG11695-PB 1..274 1..274 1462 100 Plus
CG11695-PA 544 CG11695-PA 1..267 1..267 1423 100 Plus
CG11696-PA 664 CG11696-PA 1..355 1..266 454 35.3 Plus
CG15073-PA 580 CG15073-PA 1..293 1..267 225 23 Plus
CG2889-PB 581 CG2889-PB 1..329 1..266 220 26.3 Plus
CG2889-PA 581 CG2889-PA 1..329 1..266 220 26.3 Plus
CG8388-PA 572 CG8388-PA 5..288 2..267 188 24.5 Plus
grau-PA 570 CG33133-PA 3..297 2..267 186 25.8 Plus
CG15073-PB 551 CG15073-PB 1..287 1..261 158 21.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14699-PA 553 GI14699-PA 1..263 1..266 296 34.5 Plus
Dmoj\GI20415-PA 606 GI20415-PA 3..302 1..267 160 22.2 Plus
Dmoj\GI15389-PA 611 GI15389-PA 1..110 1..112 149 37.1 Plus
Dmoj\GI15525-PA 625 GI15525-PA 1..122 1..111 148 36.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26741-PA 438 GL26741-PA 1..248 1..260 597 59.2 Plus
Dper\GL26740-PA 415 GL26740-PA 2..129 1..109 293 52.7 Plus
Dper\GL14972-PA 525 GL14972-PA 1..274 1..266 169 26 Plus
Dper\GL10210-PA 579 GL10210-PA 222..291 196..267 161 40.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11147-PA 516 GA11147-PA 1..250 1..267 845 70.8 Plus
Dpse\GA11148-PA 642 GA11148-PA 2..338 1..266 454 37.1 Plus
Dpse\GA21038-PA 579 GA21038-PA 222..291 196..267 161 40.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13094-PA 544 GM13094-PA 1..267 1..267 1220 95.5 Plus
Dsec\GM13093-PA 665 GM13093-PA 1..137 1..110 270 46.7 Plus
Dsec\GM13093-PA 665 GM13093-PA 254..355 159..266 232 46.3 Plus
Dsec\GM21911-PA 580 GM21911-PA 1..293 1..267 186 22.7 Plus
Dsec\GM15760-PA 570 GM15760-PA 3..297 2..267 168 25.7 Plus
Dsec\GM20099-PA 572 GM20099-PA 1..287 1..267 156 25.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11405-PA 582 GD11405-PA 1..293 1..267 190 24.6 Plus
Dsim\GD25235-PA 570 GD25235-PA 3..297 2..267 172 24.8 Plus
Dsim\GD25575-PA 572 GD25575-PA 217..287 195..267 151 39.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16608-PA 617 GJ16608-PA 245..318 191..266 236 55.3 Plus
Dvir\GJ20345-PA 569 GJ20345-PA 5..295 2..267 206 26.1 Plus
Dvir\GJ14728-PA 629 GJ14728-PA 1..104 1..92 156 39.4 Plus
Dvir\GJ14784-PA 627 GJ14784-PA 1..110 1..112 147 36.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16297-PA 587 GK16297-PA 1..302 1..266 343 30.9 Plus
Dwil\GK16298-PA 439 GK16298-PA 5..177 73..267 248 36.5 Plus
Dwil\GK20919-PA 607 GK20919-PA 1..299 1..267 230 26.1 Plus
Dwil\GK21489-PA 574 GK21489-PA 221..290 196..267 154 37.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15948-PA 543 GE15948-PA 1..266 1..267 1203 91.8 Plus
Dyak\GE15947-PA 663 GE15947-PA 1..137 1..110 270 46 Plus
Dyak\GE15947-PA 663 GE15947-PA 247..354 153..266 236 45.6 Plus
Dyak\GE11994-PA 588 GE11994-PA 1..299 1..267 189 23.5 Plus
Dyak\GE13753-PA 570 GE13753-PA 3..297 2..267 170 25.2 Plus
Dyak\GE14106-PA 571 GE14106-PA 1..287 1..267 161 24.4 Plus

LD47677.hyp Sequence

Translation from 908 to 1759

> LD47677.hyp
MNELCRCKICSKQLVSRISYDVHMLRFHPNKDDLSFACDQCSKRFSKQFL
LTIHSRVHQQERNEQCKHCDRSFRTAVDLRLHMRRTHDPAFVPFICDSCG
AKFKTKQNLLVHKRTVHREGSQLPEVQCQECQVWLSDENSLRKHMYMHLD
AASLRQWKCEQCGLEKGSRAKLAAHIRYHHPKEYHKCTHCAKEFKSSRSL
EEHTATHTGQDLYECAFCERTFKNSGNMHKHRRQMHAAQVAALQQQKKVP
PSKRKDKGDLLLDVLAAGGKDMSHVMGAGDMND*

LD47677.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11695-PA 544 CG11695-PA 267..544 6..283 1522 100 Plus
CG11696-PA 664 CG11696-PA 357..586 7..236 619 48.5 Plus
grau-PA 570 CG33133-PA 294..530 3..239 404 36.9 Plus
CG4282-PA 652 CG4282-PA 385..633 6..250 382 35.3 Plus
CG15073-PA 580 CG15073-PA 290..531 3..255 372 32.3 Plus