Clone LD47713 Report

Search the DGRC for LD47713

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:477
Well:13
Vector:pOT2
Associated Gene/TranscriptFic-RA
Protein status:LD47713.pep: gold
Preliminary Size:2059
Sequenced Size:1929

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9523 2001-01-01 Release 2 assignment
CG9523 2002-04-04 Blastp of sequenced clone
CG9523 2003-01-01 Sim4 clustering to Release 3
CG9523 2008-04-29 Release 5.5 accounting
CG9523 2008-08-15 Release 5.9 accounting
CG9523 2008-12-18 5.12 accounting

Clone Sequence Records

LD47713.complete Sequence

1929 bp (1929 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095059

> LD47713.complete
AAGAAGCAAGTACGTGGTGCTAGAAGTCAGACCGCAACGACTGCAATATT
GCAGATAAACAATAATTTTGGCCACACGTCTTCCAGCGTTTGGACTCAAC
GTAACATGTACCTGGCGTGTCAAGTATTCAAAATTCGCGTGAAACACAAA
GGAACCTAAAGCATTGGCCATGGGCACGGAAGCAGAACAACCGAGTCCAC
CTGCTCAGCAGCAAGATCAAGAGAATCCGCCTCTCTGTAAGGCACAAAAT
CCGAAGCCTGCCCGCCTCTATCGCTTTGTACTGATCTTCGTCGCTGGCAG
CCTGGCGGCCTGGACGTTTCATGCCCTAAGCTCAACGAATCTGGTCTGGA
AACTGCGGCAGCTCCATCATCTGCCGACCGCCCACTACTTGCAGACGCGT
GACGAGTTCGCACTGTACTCCGTGGAGGAGCTAAATGCCTTCAAAGAATT
CTACGACAAGAGCGTCAGCGACAGTGTCGGCGCCAGCTACACGGAGGCGG
AGCAGACGAACATCAAGGAGGCGCTGGGGGCACTGCGAATGGCCCAGGAC
TTGTACCTGGCGGGGAAGGATGACAAGGCGGCGCGTCTATTCGAACATGC
TCTCGCTCTAGCGCCCCGACACCCGGAAGTCCTACTGCGCTACGGCGAGT
TCCTTGAGCACAACCAGCGCAACATTGTGCTGGCGGATCAGTACTACTTT
CAGGCTCTGACCATCAGCCCGAGCAACTCCGAGGCACTAGCCAACCGTCA
GCGCACGGCAGACGTGGTGCAGAGTCTGGACGAACGCCGCCTGGAATCGC
TGGACTCCAAACGAGACGCCCTCTCCGCCATTCACGAGTCCAACGGAGCC
CTGCGACGGGCAAAGAAAGAAGCCTACTTCCAGCACATTTACCACTCAGT
AGGCATTGAGGGCAACACCATGACGCTGGCACAGACGAGGTCTATCCTAG
AGACCCGCATGGCCGTAGACGGCAAATCCATTGACGAGCACAACGAGATC
TTGGGCATGGATCTGGCTATGAAGTACATAAACGCTAGTCTGGTGCAAAA
AATCGATATCACTATTAAGGACATCCTCGAGCTGCATCGCAGAGTTCTGG
GGCATGTGGACCCAATTGAAGGGGGCGAGTTCCGACGTAACCAGGTGTAT
GTTGGAGGTCACATACCGCCAGGTCCCGGCGATCTCGCGCTGCTAATGCA
GCGTTTCGAACGGTGGCTAAACTCGGAGCACAGTAGCACACTGCATCCTG
TCAACTATGCAGCCCTTGCACACTACAAGTTGGTCCATATTCACCCATTC
GTCGATGGAAATGGACGCACCTCACGTCTGCTGATGAACACGCTGTTGAT
GCGAGCAGGCTACCCACCAGTGATAATTCCAAAGCAACAGCGTAGCAAGT
ACTATCATTTCCTCAAGTTAGCCAACGAGGGCGATATTCGCCCCTTTGTG
CGGTTCATCGCTGACTGCACGGAGAAGACGCTAGACCTTTATCTGTGGGC
CACAAGCGATCTGCCGCAACAGATCCCTATGCTCATCCAGACGGAAAGCG
AGGCCGGTGAGCGTCTGGCGCAAATGCAGTCTCCCAACGTGGCACAAAGG
TCATCAATATTAGAATTCTACGAATCCGGATCTGGAGATCTACCGTGACC
CATCTAGATGCATTGATATTAGACAATTCGTTAATTTATTATTTATATGT
TTGTGCTATATTCTGTAAATTATTGTAAACTTCGAATTACCTACATCAGT
AGATGGCTTTAGTGAAGAAAAATAACGATGTAATTCTGTGATCATATTTA
AGCTAAAAGACAACCAAAAAATGTACATAATGCACAATCCAACTAACGTG
TCCTAATATTTAGTACGATTTTTATAGAATTACATATCCTTTAAAACCCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD47713.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9523-RA 2014 CG9523-RA 84..1980 1..1897 9470 99.9 Plus
CG9523.a 1882 CG9523.a 70..1880 87..1897 9040 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6423330..6424379 1..1050 5175 99.5 Plus
chr2L 23010047 chr2L 6424698..6425344 1251..1897 3145 99.1 Plus
chr2L 23010047 chr2L 6424439..6424642 1051..1254 1020 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:44:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6424357..6425406 1..1050 5250 100 Plus
2L 23513712 2L 6425725..6426371 1251..1897 3205 99.7 Plus
2L 23513712 2L 6425466..6425669 1051..1254 1020 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6424357..6425406 1..1050 5250 100 Plus
2L 23513712 2L 6425725..6426371 1251..1897 3205 99.6 Plus
2L 23513712 2L 6425466..6425669 1051..1254 1020 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:16:09 has no hits.

LD47713.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:16:50 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6423330..6424379 1..1050 99 -> Plus
chr2L 6424439..6424642 1051..1254 100 -> Plus
chr2L 6424702..6425346 1255..1899 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:32:04 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
CG9523-RA 1..1479 170..1648 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:15:38 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
CG9523-RA 1..1479 170..1648 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:41:28 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 1..1479 170..1648 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:21 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
CG9523-RA 1..1479 170..1648 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:27 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 1..1479 170..1648 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:32 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
CG9523-RA 21..1919 1..1899 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:15:38 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
CG9523-RA 21..1919 1..1899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:28 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 22..1918 1..1897 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:21 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
CG9523-RA 21..1919 1..1899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:27 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
Fic-RA 22..1918 1..1897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:50 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6424357..6425406 1..1050 100 -> Plus
2L 6425466..6425669 1051..1254 100 -> Plus
2L 6425729..6426373 1255..1899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:50 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6424357..6425406 1..1050 100 -> Plus
2L 6425466..6425669 1051..1254 100 -> Plus
2L 6425729..6426373 1255..1899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:50 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6424357..6425406 1..1050 100 -> Plus
2L 6425466..6425669 1051..1254 100 -> Plus
2L 6425729..6426373 1255..1899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:28 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6425466..6425669 1051..1254 100 -> Plus
arm_2L 6424357..6425406 1..1050 100 -> Plus
arm_2L 6425729..6426373 1255..1899 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:50 Download gff for LD47713.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6424357..6425406 1..1050 100 -> Plus
2L 6425466..6425669 1051..1254 100 -> Plus
2L 6425729..6426373 1255..1899 99   Plus

LD47713.pep Sequence

Translation from 169 to 1647

> LD47713.pep
MGTEAEQPSPPAQQQDQENPPLCKAQNPKPARLYRFVLIFVAGSLAAWTF
HALSSTNLVWKLRQLHHLPTAHYLQTRDEFALYSVEELNAFKEFYDKSVS
DSVGASYTEAEQTNIKEALGALRMAQDLYLAGKDDKAARLFEHALALAPR
HPEVLLRYGEFLEHNQRNIVLADQYYFQALTISPSNSEALANRQRTADVV
QSLDERRLESLDSKRDALSAIHESNGALRRAKKEAYFQHIYHSVGIEGNT
MTLAQTRSILETRMAVDGKSIDEHNEILGMDLAMKYINASLVQKIDITIK
DILELHRRVLGHVDPIEGGEFRRNQVYVGGHIPPGPGDLALLMQRFERWL
NSEHSSTLHPVNYAALAHYKLVHIHPFVDGNGRTSRLLMNTLLMRAGYPP
VIIPKQQRSKYYHFLKLANEGDIRPFVRFIADCTEKTLDLYLWATSDLPQ
QIPMLIQTESEAGERLAQMQSPNVAQRSSILEFYESGSGDLP*

LD47713.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14521-PA 497 GF14521-PA 16..497 6..492 2198 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10411-PA 495 GG10411-PA 22..495 19..492 2415 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10751-PA 483 GH10751-PA 8..474 26..489 2141 86 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Fic-PA 492 CG9523-PA 1..492 1..492 2542 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11595-PA 502 GI11595-PA 36..474 34..471 2100 88.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25530-PA 508 GL25530-PA 40..508 25..492 2243 88.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21854-PA 508 GA21854-PA 40..508 25..492 2243 88.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18629-PA 492 GM18629-PA 1..492 1..492 2608 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23409-PA 492 GD23409-PA 1..492 1..492 2595 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12914-PA 485 GJ12914-PA 21..470 34..485 2152 88.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14760-PA 498 GK14760-PA 42..498 35..492 2181 88.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13868-PA 495 GE13868-PA 22..495 19..492 2421 94.5 Plus

LD47713.hyp Sequence

Translation from 169 to 1647

> LD47713.hyp
MGTEAEQPSPPAQQQDQENPPLCKAQNPKPARLYRFVLIFVAGSLAAWTF
HALSSTNLVWKLRQLHHLPTAHYLQTRDEFALYSVEELNAFKEFYDKSVS
DSVGASYTEAEQTNIKEALGALRMAQDLYLAGKDDKAARLFEHALALAPR
HPEVLLRYGEFLEHNQRNIVLADQYYFQALTISPSNSEALANRQRTADVV
QSLDERRLESLDSKRDALSAIHESNGALRRAKKEAYFQHIYHSVGIEGNT
MTLAQTRSILETRMAVDGKSIDEHNEILGMDLAMKYINASLVQKIDITIK
DILELHRRVLGHVDPIEGGEFRRNQVYVGGHIPPGPGDLALLMQRFERWL
NSEHSSTLHPVNYAALAHYKLVHIHPFVDGNGRTSRLLMNTLLMRAGYPP
VIIPKQQRSKYYHFLKLANEGDIRPFVRFIADCTEKTLDLYLWATSDLPQ
QIPMLIQTESEAGERLAQMQSPNVAQRSSILEFYESGSGDLP*

LD47713.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Fic-PA 492 CG9523-PA 1..492 1..492 2542 100 Plus